Difference between revisions of "NONHSAT075682"
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sequence = <dnaseq>ccaacattcctgggttccagtgagggtcctcttctgggttgcagactgctgacttcttattgtCTTCATGTCACTGCTATGCTGGTAGCTCTTATTTTAAATGTATTATGACTTCTAAATGCTTTTCTGCCATGCTTACATAGAGCCAACCCAGCTACATCTCATATTTGGCAAGTTTAATGAGTTTCCTCTCCTATCTCTCTCTTCCATCATTAACATTGTTCTTGAGATGTTCAAGCAGGCGTGAGCTCAGCCCAACACTCATAAACCTTGTCCTCTTCTGCCTTTTGGGTCATGCTGACCTGGTCTTGGGGTAACTACTCTGTGGTCACATCCTGTTTGCTAGTTGAGCACCCATCTAATGGTGTCTTTGCCTCTATAGCATTTCCTCCAGATTACTGATGACTACAGCACATGGGAAAGCACCAAAAGCCAGGGTACAAGGCAACCAGAGTGTATCAGCTGCTTCCCTTCAATTCACCAGGCCGACCCTAAAGTCCTAAGTCCAGACTAGCCATGAACTATTTTCTCACTGTTACCCTAGTCTCCTTAAAACTGTTCTCAAAACTATTTTTCTACTACTTTGCTGAGTTTAGAATAAATACCACCTTGCATTTGCTAGGTCTTTGAGTTCTGATTGTGGCAATTAGCTTTAGCATCCTCTTTTATGTCCTCTTATAAAAACGATCCACCACCTAGTCCATATCTCAATTTCATCTTCAATATGGCTCCAGACTCCTCCTTCCCTTTGTCTCTCCTTGTTCCAGGTTGCAGTCCTA</dnaseq>| | sequence = <dnaseq>ccaacattcctgggttccagtgagggtcctcttctgggttgcagactgctgacttcttattgtCTTCATGTCACTGCTATGCTGGTAGCTCTTATTTTAAATGTATTATGACTTCTAAATGCTTTTCTGCCATGCTTACATAGAGCCAACCCAGCTACATCTCATATTTGGCAAGTTTAATGAGTTTCCTCTCCTATCTCTCTCTTCCATCATTAACATTGTTCTTGAGATGTTCAAGCAGGCGTGAGCTCAGCCCAACACTCATAAACCTTGTCCTCTTCTGCCTTTTGGGTCATGCTGACCTGGTCTTGGGGTAACTACTCTGTGGTCACATCCTGTTTGCTAGTTGAGCACCCATCTAATGGTGTCTTTGCCTCTATAGCATTTCCTCCAGATTACTGATGACTACAGCACATGGGAAAGCACCAAAAGCCAGGGTACAAGGCAACCAGAGTGTATCAGCTGCTTCCCTTCAATTCACCAGGCCGACCCTAAAGTCCTAAGTCCAGACTAGCCATGAACTATTTTCTCACTGTTACCCTAGTCTCCTTAAAACTGTTCTCAAAACTATTTTTCTACTACTTTGCTGAGTTTAGAATAAATACCACCTTGCATTTGCTAGGTCTTTGAGTTCTGATTGTGGCAATTAGCTTTAGCATCCTCTTTTATGTCCTCTTATAAAAACGATCCACCACCTAGTCCATATCTCAATTTCATCTTCAATATGGCTCCAGACTCCTCCTTCCCTTTGTCTCTCCTTGTTCCAGGTTGCAGTCCTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG029922]] | + | [[Category:Intergenic]][[Category:NONHSAG029922]][[Category:Transcripts]] |
Revision as of 09:47, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075682 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
779 nt |
Genomic location |
chr2+:177708258..177711108 |
Exon number |
2 |
Exons |
177708258..177708320,177710393..177711108 |
Genome context |
|
Sequence |
000001 ccaacattcc tgggttccag tgagggtcct cttctgggtt gcagactgct gacttcttat tgtCTTCATG TCACTGCTAT 000080
000081 GCTGGTAGCT CTTATTTTAA ATGTATTATG ACTTCTAAAT GCTTTTCTGC CATGCTTACA TAGAGCCAAC CCAGCTACAT 000160 000161 CTCATATTTG GCAAGTTTAA TGAGTTTCCT CTCCTATCTC TCTCTTCCAT CATTAACATT GTTCTTGAGA TGTTCAAGCA 000240 000241 GGCGTGAGCT CAGCCCAACA CTCATAAACC TTGTCCTCTT CTGCCTTTTG GGTCATGCTG ACCTGGTCTT GGGGTAACTA 000320 000321 CTCTGTGGTC ACATCCTGTT TGCTAGTTGA GCACCCATCT AATGGTGTCT TTGCCTCTAT AGCATTTCCT CCAGATTACT 000400 000401 GATGACTACA GCACATGGGA AAGCACCAAA AGCCAGGGTA CAAGGCAACC AGAGTGTATC AGCTGCTTCC CTTCAATTCA 000480 000481 CCAGGCCGAC CCTAAAGTCC TAAGTCCAGA CTAGCCATGA ACTATTTTCT CACTGTTACC CTAGTCTCCT TAAAACTGTT 000560 000561 CTCAAAACTA TTTTTCTACT ACTTTGCTGA GTTTAGAATA AATACCACCT TGCATTTGCT AGGTCTTTGA GTTCTGATTG 000640 000641 TGGCAATTAG CTTTAGCATC CTCTTTTATG TCCTCTTATA AAAACGATCC ACCACCTAGT CCATATCTCA ATTTCATCTT 000720 000721 CAATATGGCT CCAGACTCCT CCTTCCCTTT GTCTCTCCTT GTTCCAGGTT GCAGTCCTA |
Predicted Small Protein
Name | NONHSAT075682_smProtein_179:316 |
Length | 46 |
Molecular weight | 5010.9779 |
Aromaticity | 0.0888888888889 |
Instability index | 65.8288888889 |
Isoelectric point | 7.84698486328 |
Runs | 8 |
Runs residual | 0.0155303030303 |
Runs probability | 0.0585475181063 |
Amino acid sequence | MSFLSYLSLPSLTLFLRCSSRRELSPTLINLVLFCLLGHADLVLG |
Secondary structure | LLHHHHLLLLHHHHEELLLLLLLLLHHHHHHHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToo |