Difference between revisions of "NONHSAT066249"

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sequence = <dnaseq>ATTGTCATTTTCAGGAAGAATGGAGTTCAGGCGATGGTGGAATTTGACTCAGTTCAAAGTGCCCAGCGGGCCAAGGCCTCTCTCAATGGGGCTGATATCTATTCTGGCTGTTGCACTCTGAAGATCGAATACGCAAAGCCTACACGCTTGAATGTGTTCAAGAATGATCAGGATACTTGGGACTACACAAACCCCAATCTCAGTGGACAAGCTGAGAGGCCAGAGCCCCCCATTCCTAGGCAGGCCTGTCTTGCTCGCCCTTGCATCTGGGAAGCAGTGGGCAGGGTGGGCTAGACTCTTCCCCAGGATCCTCACAGTGGGCCCTGTGGGCCTGGCTGCTCCCTCCAAAGGTCAGAGGCAAATTGGTGACCAAGTGAATGTACCAGAGCGGGCAATGGCATTACATGACTGCTAACAGAAACATGGCAACAACCATTTCTTCTCCAAGGAACATAAATAGAAGATGTGCAGACCGGCAGGGGCTAGTGGCAGGGGGCTGGCTGTGCATTGGTTTTGATGCCTCTCAGCTTTGGCAGCCCCAAGGCTGGGGCCCAAAAAAAAACGAGGGCTGATGAGGTGACCTGGAGTGAGGGCGGTGCTTCGCCACCCCTCAGGAACCATACTTCAGCGGCTCTGCCTCTGCACATTGCTCACCAACACACAGGGTAGAAAACCACTAGCTCTTCCTGGAGAGAACAGAACATGCAGCCTCCACCACGTCCCCAGAAACAGCCGCAGACTTGAGCTCACTACATCAAGAACACCACACCGCGCTCCAAGGAACAGCTACAAGCACAGAGACAGAGGCATACAGAGACAAAGAGAGAAAGAGACGCAACATGGCAGCAGACACTGCTTTTTTTATTAAACATTAAAAAAAAGGTCAAAATCCAAGCAAACTTGAACCCGAGAATGTACACAGAAGTAGGAAACACAGAGAACAGAGCTGTCCCAGCCAGCCAGCGAGCGATGCTCTTTTCGGAGAACGTTTCATAGACGGAAGTAGATTCCATGGGCCTCCAAGACAATAGGATCCTCTCTCCATTCCTCGCCATATGGGTTTTGTTTTTTAAGTCATTTGGTTTGGGGAGGGCCTTGTTTTTTTTCTGTTTTGATATTTTTATTTTTTCTGCAGTCACCGGCTGCCAACATAATCTGCACCAACTGGAGATCAGaaaccaaaaaaaaaaaaaaaaattttaaccacaacaaaaaaaaaatcaaaaaaaccaaaacagacctaaaaccagaCAGCCAAACAGCTCAGAGGCACACAGTTACCTGCTGCCGGGTAACCAGGCGCGCTCCCAAGGCCAAAAGCGCGAGCGTAGTGGGGCCACTGGCACACCTCATACCAGGAGACACGCACACGGAGCGCTACACAGCCAGAAGCACCGCACCACCGCACTGCAGCACATATGTGAGGAGGTGACAACATGGAGGGACACTACCCACTTCATACACCTTTATTTCCACTTTTCTGATATCTTCTGAGGACAGAACATCTGTGAGCCATTTTTGATTTAATCAAAATATTGACTTTTAAAACAATTCTTTAAAAAAATTGTAGCGGATGTGTACCGTGACTTGTATTTATGACTGTAAAACCATGTGATGCAGGGTCGCAGTGTATGTTTGATGGGACGCCATCTTTCAGAACTGTGCTAACTCACTGTTGAAGCGTCCAATGGTAAGAGAAAATACAGATTTGTTTTTTGTGACAAATGGACATTGTACTCTGTACTTCTGCTGTAAGTAGTCCTTTTCCATTTTGTAATGACTGGTAACAAAACCCAGGCCGGGTggcaggaaagggcagtggtttcgagccctgggttttggagtcagccagacctgggttcaaatatggctcagccactgtcttgctttgtgactttgggccaaagtgtcttttaactgctcagttaaaagttaacaactcagtcttcttatctgtaaaatggggctgaaatatcagaacctacctcatagggttgttgtgaggaatttcagaagctgtgatgtctgtaaagcgcttagcccagtgcctgccacttaagcgctaagttaaaggcagTGATTACGAACTGCTGGGGTCGGGGTGGATCTGCGCCATTGCTGGGTGTGGGAATGTCGATGCCTTGTACATGATTGCTTATTTGAACTGATTCTGCTGTTGCCCTGCTTGTCAGCTACAGTCAGTCCCTCTTGGGCTGGCGGGACTGGGAGGGAGGGGGGACTGGGATTAAGAAAGAAGGGATCTAACAGAGACAGTCTGGAGCTCCTAGAACTTTGGGGGCTTTGGGGGTCAAACTTGCTTGCTTCCCTCTGGGGTTATTTTCCTCTTAATCTACTCTCCCTTCATTGGGAGTCACTTTAGAAAGCTGCTTTTGGCCCGCCATAATATATCAGCTTCTGTAGCAGCTGCACATTCCCCAGAGGGCCTGGGAGCTGGGCTTTCTCCCAGGGCCAGGGTAGGTGAGAGCACAGAATCTGGCCTTGTCCTTCACAGAACAAGGCCAGCCCTTTGGTATGAGCAGGGGAAGGAGAGTGGGCACCAGCTTTGAGGCTCGGGCTTCATGCCCGCCGTAGGTCAGATCACAAAAGGAGGCCCCACAGCCCTCGAGGAAGGGAGGGCTTGCAGTTGGCAGGAGCTGGGGGCTCAGATCAGCCTGTGCAGTCAGGAGGGAGGGAGAGACCCCAATTTCTGAGTGAGACTCCTAACTGTTTTCTCTCTCCACAGG</dnaseq>|
 
sequence = <dnaseq>ATTGTCATTTTCAGGAAGAATGGAGTTCAGGCGATGGTGGAATTTGACTCAGTTCAAAGTGCCCAGCGGGCCAAGGCCTCTCTCAATGGGGCTGATATCTATTCTGGCTGTTGCACTCTGAAGATCGAATACGCAAAGCCTACACGCTTGAATGTGTTCAAGAATGATCAGGATACTTGGGACTACACAAACCCCAATCTCAGTGGACAAGCTGAGAGGCCAGAGCCCCCCATTCCTAGGCAGGCCTGTCTTGCTCGCCCTTGCATCTGGGAAGCAGTGGGCAGGGTGGGCTAGACTCTTCCCCAGGATCCTCACAGTGGGCCCTGTGGGCCTGGCTGCTCCCTCCAAAGGTCAGAGGCAAATTGGTGACCAAGTGAATGTACCAGAGCGGGCAATGGCATTACATGACTGCTAACAGAAACATGGCAACAACCATTTCTTCTCCAAGGAACATAAATAGAAGATGTGCAGACCGGCAGGGGCTAGTGGCAGGGGGCTGGCTGTGCATTGGTTTTGATGCCTCTCAGCTTTGGCAGCCCCAAGGCTGGGGCCCAAAAAAAAACGAGGGCTGATGAGGTGACCTGGAGTGAGGGCGGTGCTTCGCCACCCCTCAGGAACCATACTTCAGCGGCTCTGCCTCTGCACATTGCTCACCAACACACAGGGTAGAAAACCACTAGCTCTTCCTGGAGAGAACAGAACATGCAGCCTCCACCACGTCCCCAGAAACAGCCGCAGACTTGAGCTCACTACATCAAGAACACCACACCGCGCTCCAAGGAACAGCTACAAGCACAGAGACAGAGGCATACAGAGACAAAGAGAGAAAGAGACGCAACATGGCAGCAGACACTGCTTTTTTTATTAAACATTAAAAAAAAGGTCAAAATCCAAGCAAACTTGAACCCGAGAATGTACACAGAAGTAGGAAACACAGAGAACAGAGCTGTCCCAGCCAGCCAGCGAGCGATGCTCTTTTCGGAGAACGTTTCATAGACGGAAGTAGATTCCATGGGCCTCCAAGACAATAGGATCCTCTCTCCATTCCTCGCCATATGGGTTTTGTTTTTTAAGTCATTTGGTTTGGGGAGGGCCTTGTTTTTTTTCTGTTTTGATATTTTTATTTTTTCTGCAGTCACCGGCTGCCAACATAATCTGCACCAACTGGAGATCAGaaaccaaaaaaaaaaaaaaaaattttaaccacaacaaaaaaaaaatcaaaaaaaccaaaacagacctaaaaccagaCAGCCAAACAGCTCAGAGGCACACAGTTACCTGCTGCCGGGTAACCAGGCGCGCTCCCAAGGCCAAAAGCGCGAGCGTAGTGGGGCCACTGGCACACCTCATACCAGGAGACACGCACACGGAGCGCTACACAGCCAGAAGCACCGCACCACCGCACTGCAGCACATATGTGAGGAGGTGACAACATGGAGGGACACTACCCACTTCATACACCTTTATTTCCACTTTTCTGATATCTTCTGAGGACAGAACATCTGTGAGCCATTTTTGATTTAATCAAAATATTGACTTTTAAAACAATTCTTTAAAAAAATTGTAGCGGATGTGTACCGTGACTTGTATTTATGACTGTAAAACCATGTGATGCAGGGTCGCAGTGTATGTTTGATGGGACGCCATCTTTCAGAACTGTGCTAACTCACTGTTGAAGCGTCCAATGGTAAGAGAAAATACAGATTTGTTTTTTGTGACAAATGGACATTGTACTCTGTACTTCTGCTGTAAGTAGTCCTTTTCCATTTTGTAATGACTGGTAACAAAACCCAGGCCGGGTggcaggaaagggcagtggtttcgagccctgggttttggagtcagccagacctgggttcaaatatggctcagccactgtcttgctttgtgactttgggccaaagtgtcttttaactgctcagttaaaagttaacaactcagtcttcttatctgtaaaatggggctgaaatatcagaacctacctcatagggttgttgtgaggaatttcagaagctgtgatgtctgtaaagcgcttagcccagtgcctgccacttaagcgctaagttaaaggcagTGATTACGAACTGCTGGGGTCGGGGTGGATCTGCGCCATTGCTGGGTGTGGGAATGTCGATGCCTTGTACATGATTGCTTATTTGAACTGATTCTGCTGTTGCCCTGCTTGTCAGCTACAGTCAGTCCCTCTTGGGCTGGCGGGACTGGGAGGGAGGGGGGACTGGGATTAAGAAAGAAGGGATCTAACAGAGACAGTCTGGAGCTCCTAGAACTTTGGGGGCTTTGGGGGTCAAACTTGCTTGCTTCCCTCTGGGGTTATTTTCCTCTTAATCTACTCTCCCTTCATTGGGAGTCACTTTAGAAAGCTGCTTTTGGCCCGCCATAATATATCAGCTTCTGTAGCAGCTGCACATTCCCCAGAGGGCCTGGGAGCTGGGCTTTCTCCCAGGGCCAGGGTAGGTGAGAGCACAGAATCTGGCCTTGTCCTTCACAGAACAAGGCCAGCCCTTTGGTATGAGCAGGGGAAGGAGAGTGGGCACCAGCTTTGAGGCTCGGGCTTCATGCCCGCCGTAGGTCAGATCACAAAAGGAGGCCCCACAGCCCTCGAGGAAGGGAGGGCTTGCAGTTGGCAGGAGCTGGGGGCTCAGATCAGCCTGTGCAGTCAGGAGGGAGGGAGAGACCCCAATTTCTGAGTGAGACTCCTAACTGTTTTCTCTCTCCACAGG</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG025760]]
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[[Category:Sense]][[Category:NONHSAG025760]][[Category:Transcripts]]

Revision as of 09:54, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT066249

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2744 nt

Genomic location

chr19-:39331199..39336330

Exon number

4

Exons

39331199..39333731,39334482..39334554,39334648..39334744,39336290..39336330

Genome context

Sequence
000001 ATTGTCATTT TCAGGAAGAA TGGAGTTCAG GCGATGGTGG AATTTGACTC AGTTCAAAGT GCCCAGCGGG CCAAGGCCTC 000080
000081 TCTCAATGGG GCTGATATCT ATTCTGGCTG TTGCACTCTG AAGATCGAAT ACGCAAAGCC TACACGCTTG AATGTGTTCA 000160
000161 AGAATGATCA GGATACTTGG GACTACACAA ACCCCAATCT CAGTGGACAA GCTGAGAGGC CAGAGCCCCC CATTCCTAGG 000240
000241 CAGGCCTGTC TTGCTCGCCC TTGCATCTGG GAAGCAGTGG GCAGGGTGGG CTAGACTCTT CCCCAGGATC CTCACAGTGG 000320
000321 GCCCTGTGGG CCTGGCTGCT CCCTCCAAAG GTCAGAGGCA AATTGGTGAC CAAGTGAATG TACCAGAGCG GGCAATGGCA 000400
000401 TTACATGACT GCTAACAGAA ACATGGCAAC AACCATTTCT TCTCCAAGGA ACATAAATAG AAGATGTGCA GACCGGCAGG 000480
000481 GGCTAGTGGC AGGGGGCTGG CTGTGCATTG GTTTTGATGC CTCTCAGCTT TGGCAGCCCC AAGGCTGGGG CCCAAAAAAA 000560
000561 AACGAGGGCT GATGAGGTGA CCTGGAGTGA GGGCGGTGCT TCGCCACCCC TCAGGAACCA TACTTCAGCG GCTCTGCCTC 000640
000641 TGCACATTGC TCACCAACAC ACAGGGTAGA AAACCACTAG CTCTTCCTGG AGAGAACAGA ACATGCAGCC TCCACCACGT 000720
000721 CCCCAGAAAC AGCCGCAGAC TTGAGCTCAC TACATCAAGA ACACCACACC GCGCTCCAAG GAACAGCTAC AAGCACAGAG 000800
000801 ACAGAGGCAT ACAGAGACAA AGAGAGAAAG AGACGCAACA TGGCAGCAGA CACTGCTTTT TTTATTAAAC ATTAAAAAAA 000880
000881 AGGTCAAAAT CCAAGCAAAC TTGAACCCGA GAATGTACAC AGAAGTAGGA AACACAGAGA ACAGAGCTGT CCCAGCCAGC 000960
000961 CAGCGAGCGA TGCTCTTTTC GGAGAACGTT TCATAGACGG AAGTAGATTC CATGGGCCTC CAAGACAATA GGATCCTCTC 001040
001041 TCCATTCCTC GCCATATGGG TTTTGTTTTT TAAGTCATTT GGTTTGGGGA GGGCCTTGTT TTTTTTCTGT TTTGATATTT 001120
001121 TTATTTTTTC TGCAGTCACC GGCTGCCAAC ATAATCTGCA CCAACTGGAG ATCAGaaacc aaaaaaaaaa aaaaaaattt 001200
001201 taaccacaac aaaaaaaaaa tcaaaaaaac caaaacagac ctaaaaccag aCAGCCAAAC AGCTCAGAGG CACACAGTTA 001280
001281 CCTGCTGCCG GGTAACCAGG CGCGCTCCCA AGGCCAAAAG CGCGAGCGTA GTGGGGCCAC TGGCACACCT CATACCAGGA 001360
001361 GACACGCACA CGGAGCGCTA CACAGCCAGA AGCACCGCAC CACCGCACTG CAGCACATAT GTGAGGAGGT GACAACATGG 001440
001441 AGGGACACTA CCCACTTCAT ACACCTTTAT TTCCACTTTT CTGATATCTT CTGAGGACAG AACATCTGTG AGCCATTTTT 001520
001521 GATTTAATCA AAATATTGAC TTTTAAAACA ATTCTTTAAA AAAATTGTAG CGGATGTGTA CCGTGACTTG TATTTATGAC 001600
001601 TGTAAAACCA TGTGATGCAG GGTCGCAGTG TATGTTTGAT GGGACGCCAT CTTTCAGAAC TGTGCTAACT CACTGTTGAA 001680
001681 GCGTCCAATG GTAAGAGAAA ATACAGATTT GTTTTTTGTG ACAAATGGAC ATTGTACTCT GTACTTCTGC TGTAAGTAGT 001760
001761 CCTTTTCCAT TTTGTAATGA CTGGTAACAA AACCCAGGCC GGGTggcagg aaagggcagt ggtttcgagc cctgggtttt 001840
001841 ggagtcagcc agacctgggt tcaaatatgg ctcagccact gtcttgcttt gtgactttgg gccaaagtgt cttttaactg 001920
001921 ctcagttaaa agttaacaac tcagtcttct tatctgtaaa atggggctga aatatcagaa cctacctcat agggttgttg 002000
002001 tgaggaattt cagaagctgt gatgtctgta aagcgcttag cccagtgcct gccacttaag cgctaagtta aaggcagTGA 002080
002081 TTACGAACTG CTGGGGTCGG GGTGGATCTG CGCCATTGCT GGGTGTGGGA ATGTCGATGC CTTGTACATG ATTGCTTATT 002160
002161 TGAACTGATT CTGCTGTTGC CCTGCTTGTC AGCTACAGTC AGTCCCTCTT GGGCTGGCGG GACTGGGAGG GAGGGGGGAC 002240
002241 TGGGATTAAG AAAGAAGGGA TCTAACAGAG ACAGTCTGGA GCTCCTAGAA CTTTGGGGGC TTTGGGGGTC AAACTTGCTT 002320
002321 GCTTCCCTCT GGGGTTATTT TCCTCTTAAT CTACTCTCCC TTCATTGGGA GTCACTTTAG AAAGCTGCTT TTGGCCCGCC 002400
002401 ATAATATATC AGCTTCTGTA GCAGCTGCAC ATTCCCCAGA GGGCCTGGGA GCTGGGCTTT CTCCCAGGGC CAGGGTAGGT 002480
002481 GAGAGCACAG AATCTGGCCT TGTCCTTCAC AGAACAAGGC CAGCCCTTTG GTATGAGCAG GGGAAGGAGA GTGGGCACCA 002560
002561 GCTTTGAGGC TCGGGCTTCA TGCCCGCCGT AGGTCAGATC ACAAAAGGAG GCCCCACAGC CCTCGAGGAA GGGAGGGCTT 002640
002641 GCAGTTGGCA GGAGCTGGGG GCTCAGATCA GCCTGTGCAG TCAGGAGGGA GGGAGAGACC CCAATTTCTG AGTGAGACTC 002720
002721 CTAACTGTTT TCTCTCTCCA CAGG
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Predicted Small Protein

Name NONHSAT066249_smProtein_377:571
Length 65
Molecular weight 7242.0813
Aromaticity 0.109375
Instability index 88.940625
Isoelectric point 9.69073486328
Runs 11
Runs residual 0.02328125
Runs probability 0.0405726582198
Amino acid sequence MYQSGQWHYMTANRNMATTISSPRNINRRCADRQGLVAGGWLCIGFDASQLWQPQGWGPK
KNEG
Secondary structure LLLLLEEEEEELLLLEEEEELLLHHHHHHHHLLLLEEELLEEEEEELLLLLLLLLLLLLL
LLLL
PRMN -
PiMo -