Difference between revisions of "NONHSAT090226"
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sequence = <dnaseq>GTTTGTTCTGCCTCCTGGGAAGCAGCTTTCAAACTCATTGTTCAAGTGTCCTTGGAATGAAAAAGACAAACCATCCCGTCAAGGGAACAATAGTTTCTACTTAGGGGGAAAGTACATCTTGCCAATTTCAGTTTGCATTGTCCCAAACATGTTTGTAAAACTCTACCCTGAATTATCTGTGATGAATACAGTATAAAGTTAACCCCCCACATGGAATGACTAACAAAAGCAGATGCGAAACAGCTAACAAAGAAAGCAAACACAAAGATAAAACAGCATGCGTCAAATCCTATGTCAATCATAAGAAAATGTTTTTCACATCTAATCATCGAAGATTAAAGGCTGGATATTTAAGGAATGTGAAAGAGGATGTCCTTCAGCAAACAATTTAAATAAGGCAAGAAATGAACGTGATATTTTCTCCGCCTCCTCTCTTCTGACTGAGAAGATGATTCCTGGAGATAATCCACTTGGTTATCCGTGGATGTGAACATAATTTGGAGGCAGCAGTCACTCCAGATGGCCCGCTGAAGCTGGGAGTCCTGAGTTAATTTCAAGCCAAATTTCTCACTCCCTGGAGGAGCAGAGTGGAGGGTGTGTGTGCATGGAGAAGTCCAAGATTTCATATCTGGAAAAGAAGACTGGGAGAGGCCAGCATGAATGGCCACTGTCCTCGCCAAATCTGGATGGTATGTCttaggtgagttgttaagaaaacttcctgactgccgttgtggacagatcttggaacagactgctgagggcagctgcaggatgactttttctggagTTCAGAGCTGCCTGGGTGGTTCCAATGCTCTTGCCTGACTCAGCTAGCCCAGGCCTCCTGAGTGACCTCTGAAGGTGTGCCCCAACTCACTAAGCCCTAGATCTGTGTGGGCTTCTGAGGGGTGGGGAAGACATGGGGCCAGTAACATAGAACTATGGTGGATTGGTAGCTTCAATGAGTACAAAAGGAATTCCAGAGAAACTTAGATATT</dnaseq>| | sequence = <dnaseq>GTTTGTTCTGCCTCCTGGGAAGCAGCTTTCAAACTCATTGTTCAAGTGTCCTTGGAATGAAAAAGACAAACCATCCCGTCAAGGGAACAATAGTTTCTACTTAGGGGGAAAGTACATCTTGCCAATTTCAGTTTGCATTGTCCCAAACATGTTTGTAAAACTCTACCCTGAATTATCTGTGATGAATACAGTATAAAGTTAACCCCCCACATGGAATGACTAACAAAAGCAGATGCGAAACAGCTAACAAAGAAAGCAAACACAAAGATAAAACAGCATGCGTCAAATCCTATGTCAATCATAAGAAAATGTTTTTCACATCTAATCATCGAAGATTAAAGGCTGGATATTTAAGGAATGTGAAAGAGGATGTCCTTCAGCAAACAATTTAAATAAGGCAAGAAATGAACGTGATATTTTCTCCGCCTCCTCTCTTCTGACTGAGAAGATGATTCCTGGAGATAATCCACTTGGTTATCCGTGGATGTGAACATAATTTGGAGGCAGCAGTCACTCCAGATGGCCCGCTGAAGCTGGGAGTCCTGAGTTAATTTCAAGCCAAATTTCTCACTCCCTGGAGGAGCAGAGTGGAGGGTGTGTGTGCATGGAGAAGTCCAAGATTTCATATCTGGAAAAGAAGACTGGGAGAGGCCAGCATGAATGGCCACTGTCCTCGCCAAATCTGGATGGTATGTCttaggtgagttgttaagaaaacttcctgactgccgttgtggacagatcttggaacagactgctgagggcagctgcaggatgactttttctggagTTCAGAGCTGCCTGGGTGGTTCCAATGCTCTTGCCTGACTCAGCTAGCCCAGGCCTCCTGAGTGACCTCTGAAGGTGTGCCCCAACTCACTAAGCCCTAGATCTGTGTGGGCTTCTGAGGGGTGGGGAAGACATGGGGCCAGTAACATAGAACTATGGTGGATTGGTAGCTTCAATGAGTACAAAAGGAATTCCAGAGAAACTTAGATATT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG035321]] | + | [[Category:Intergenic]][[Category:NONHSAG035321]][[Category:Transcripts]] |
Revision as of 10:02, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT090226 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1001 nt |
| Genomic location |
chr3+:64049173..64054138 |
| Exon number |
2 |
| Exons |
64049173..64049569,64053535..64054138 |
| Genome context |
|
| Sequence |
000001 GTTTGTTCTG CCTCCTGGGA AGCAGCTTTC AAACTCATTG TTCAAGTGTC CTTGGAATGA AAAAGACAAA CCATCCCGTC 000080
000081 AAGGGAACAA TAGTTTCTAC TTAGGGGGAA AGTACATCTT GCCAATTTCA GTTTGCATTG TCCCAAACAT GTTTGTAAAA 000160 000161 CTCTACCCTG AATTATCTGT GATGAATACA GTATAAAGTT AACCCCCCAC ATGGAATGAC TAACAAAAGC AGATGCGAAA 000240 000241 CAGCTAACAA AGAAAGCAAA CACAAAGATA AAACAGCATG CGTCAAATCC TATGTCAATC ATAAGAAAAT GTTTTTCACA 000320 000321 TCTAATCATC GAAGATTAAA GGCTGGATAT TTAAGGAATG TGAAAGAGGA TGTCCTTCAG CAAACAATTT AAATAAGGCA 000400 000401 AGAAATGAAC GTGATATTTT CTCCGCCTCC TCTCTTCTGA CTGAGAAGAT GATTCCTGGA GATAATCCAC TTGGTTATCC 000480 000481 GTGGATGTGA ACATAATTTG GAGGCAGCAG TCACTCCAGA TGGCCCGCTG AAGCTGGGAG TCCTGAGTTA ATTTCAAGCC 000560 000561 AAATTTCTCA CTCCCTGGAG GAGCAGAGTG GAGGGTGTGT GTGCATGGAG AAGTCCAAGA TTTCATATCT GGAAAAGAAG 000640 000641 ACTGGGAGAG GCCAGCATGA ATGGCCACTG TCCTCGCCAA ATCTGGATGG TATGTCttag gtgagttgtt aagaaaactt 000720 000721 cctgactgcc gttgtggaca gatcttggaa cagactgctg agggcagctg caggatgact ttttctggag TTCAGAGCTG 000800 000801 CCTGGGTGGT TCCAATGCTC TTGCCTGACT CAGCTAGCCC AGGCCTCCTG AGTGACCTCT GAAGGTGTGC CCCAACTCAC 000880 000881 TAAGCCCTAG ATCTGTGTGG GCTTCTGAGG GGTGGGGAAG ACATGGGGCC AGTAACATAG AACTATGGTG GATTGGTAGC 000960 000961 TTCAATGAGT ACAAAAGGAA TTCCAGAGAA ACTTAGATAT T |
Predicted Small Protein
| Name | NONHSAT090226_smProtein_215:391 |
| Length | 59 |
| Molecular weight | 6842.8271 |
| Aromaticity | 0.0689655172414 |
| Instability index | 63.8103448276 |
| Isoelectric point | 10.0194702148 |
| Runs | 7 |
| Runs residual | 0.035903751421 |
| Runs probability | 0.0182829888712 |
| Amino acid sequence | MTNKSRCETANKESKHKDKTACVKSYVNHKKMFFTSNHRRLKAGYLRNVKEDVLQQTI |
| Secondary structure | LLLLLLLLLLLLLLLLLLLEEEEEEEELLEEEEEELLHHHHHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
