Difference between revisions of "NONHSAT002652"
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sequence = <dnaseq>CAACTCGACTTGGAAGCAATCCAACAGAGCAGCTGTTGTGGCTAGTGGAGGTTCCCAAATACCTGTCATGAGTGGTCTGAAGCTTCTGGAAGTAGTGAAGTAGGGAAGCTGCAGACTGCCAAGAATCAGAGAAAGTCTGAGCTGTCATTTACTTTGAATGAGGAACTTAAAAACATTCACAATATTGGTGGACAACCCACCCATCAGCACACCTAGGGTGCCTCAGTTTCTTGTGCAAGGGCTCAGAGGGCAGATGCTCACAGTGTTGACTAAGCGTGCACCGAGTAAGCTCTCACTGGAAGGAACAGTGGTACAGTGAGAGGAATGCCAACCAGCTGCAAATTAAAACTACATGAGACTGAAGAGAATGCAAACACAGGAATCTGCCAAACCTGCCAAAACCCTGCAGAAACCGGACAAGGTTGTCACAGCTGGTTATAAACCTGTTGCTAATCATCAGTGTAATATTGCATATGAGAAGAAAAAGAAAGAAGAGGGAAAGAGGGTGCAGGCTGATAAAGACCACGTTTTATCCTTGCTATTTGCTGCCTTCGAGAAACACCAGTGTTACAACATAAAGGATGTGGTTGGCATCACAATGCAACCTGTGTGTGCCTCAAGGAAATCTTGAATGAGACGGGTGTTTGAAATGTCAGTGGTCCCCACAAAAGCACATGGAGCTGAAGGCAGAGACTGACATTATCCGGCAGCAGCCAAgagt</dnaseq>| | sequence = <dnaseq>CAACTCGACTTGGAAGCAATCCAACAGAGCAGCTGTTGTGGCTAGTGGAGGTTCCCAAATACCTGTCATGAGTGGTCTGAAGCTTCTGGAAGTAGTGAAGTAGGGAAGCTGCAGACTGCCAAGAATCAGAGAAAGTCTGAGCTGTCATTTACTTTGAATGAGGAACTTAAAAACATTCACAATATTGGTGGACAACCCACCCATCAGCACACCTAGGGTGCCTCAGTTTCTTGTGCAAGGGCTCAGAGGGCAGATGCTCACAGTGTTGACTAAGCGTGCACCGAGTAAGCTCTCACTGGAAGGAACAGTGGTACAGTGAGAGGAATGCCAACCAGCTGCAAATTAAAACTACATGAGACTGAAGAGAATGCAAACACAGGAATCTGCCAAACCTGCCAAAACCCTGCAGAAACCGGACAAGGTTGTCACAGCTGGTTATAAACCTGTTGCTAATCATCAGTGTAATATTGCATATGAGAAGAAAAAGAAAGAAGAGGGAAAGAGGGTGCAGGCTGATAAAGACCACGTTTTATCCTTGCTATTTGCTGCCTTCGAGAAACACCAGTGTTACAACATAAAGGATGTGGTTGGCATCACAATGCAACCTGTGTGTGCCTCAAGGAAATCTTGAATGAGACGGGTGTTTGAAATGTCAGTGGTCCCCACAAAAGCACATGGAGCTGAAGGCAGAGACTGACATTATCCGGCAGCAGCCAAgagt</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG001164]] | + | [[Category:Intergenic]][[Category:NONHSAG001164]][[Category:Transcripts]] |
Revision as of 10:17, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002652 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
721 nt |
Genomic location |
chr1-:41059305..41060025 |
Exon number |
1 |
Exons |
41059305..41060025 |
Genome context |
|
Sequence |
000001 CAACTCGACT TGGAAGCAAT CCAACAGAGC AGCTGTTGTG GCTAGTGGAG GTTCCCAAAT ACCTGTCATG AGTGGTCTGA 000080
000081 AGCTTCTGGA AGTAGTGAAG TAGGGAAGCT GCAGACTGCC AAGAATCAGA GAAAGTCTGA GCTGTCATTT ACTTTGAATG 000160 000161 AGGAACTTAA AAACATTCAC AATATTGGTG GACAACCCAC CCATCAGCAC ACCTAGGGTG CCTCAGTTTC TTGTGCAAGG 000240 000241 GCTCAGAGGG CAGATGCTCA CAGTGTTGAC TAAGCGTGCA CCGAGTAAGC TCTCACTGGA AGGAACAGTG GTACAGTGAG 000320 000321 AGGAATGCCA ACCAGCTGCA AATTAAAACT ACATGAGACT GAAGAGAATG CAAACACAGG AATCTGCCAA ACCTGCCAAA 000400 000401 ACCCTGCAGA AACCGGACAA GGTTGTCACA GCTGGTTATA AACCTGTTGC TAATCATCAG TGTAATATTG CATATGAGAA 000480 000481 GAAAAAGAAA GAAGAGGGAA AGAGGGTGCA GGCTGATAAA GACCACGTTT TATCCTTGCT ATTTGCTGCC TTCGAGAAAC 000560 000561 ACCAGTGTTA CAACATAAAG GATGTGGTTG GCATCACAAT GCAACCTGTG TGTGCCTCAA GGAAATCTTG AATGAGACGG 000640 000641 GTGTTTGAAA TGTCAGTGGT CCCCACAAAA GCACATGGAG CTGAAGGCAG AGACTGACAT TATCCGGCAG CAGCCAAgag 000720 000721 t |
Predicted Small Protein
Name | NONHSAT002652_smProtein_473:577 |
Length | 35 |
Molecular weight | 4160.9402 |
Aromaticity | 0.0882352941176 |
Instability index | 68.7767647059 |
Isoelectric point | 11.3450317383 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0321119438767 |
Amino acid sequence | MRRKRKKRERGCRLIKTTFYPCYLLPSRNTSVTT |
Secondary structure | LLLHHHHHLLLLEEEELLEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |