Difference between revisions of "ENST00000415469.1"
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sequence = <dnaseq>AAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGTTAGGCTTGGCCACAAGAGACAAATTGCAAGGCATGGAGACATTTTTCTAACACTTGAAAATTCTATGCAAGAGCACCAGGCAGCTCAGTCACCTTGTCACTTATCTACTGGGTCACCTTGTTGGCATGGGATGCCAGCCAGGCTTGCAGCTGCTCCATCCTCCCCTGAATTTGTACTTCAGCTTCTCCACTCATGGCCTGCCCTGAGGACTTCATGGTTCAGCATCAGATATGAAGACGACAGCCCTATAGAGACTATTTAACCAGCTTCTAAGGTGGTTAAATATCTTACCAGCCTATGTAAGGCCGAATCCTACTAACAAAGCACTGGTATATGTAATATCCCAGTGGTTTGCTTCTCTAATTGAACCCTGACTACTACAGAAGTCCAGATACCACAGTCTGAGTAGTTCTTTAATCTGCTTATCTGGTGATTCCATCACAAATGGTTCAGTTGGGCAAAAGGCTCCAGTGAAGAGCTGTGAGGCTTATGTATGGGGACTCACCAGGGGCCAGCCCAGGCTGCCCACAAGACCATGAGCCACCCTGTGACTGAATGAAGTGGAGAGAAGGGAAAGTAGTTAAGAAATCAAGAAAAGTGTCTTTCAGCACCATGGCCAGAAGTTGTGCCACAGAATTGGAACAGGGAAACCCAGAGAGCCAGTGCTGTCCTAGTCCTAGTGCTGAATGATCCCATTGGTGTCCTTAGAAGGGCTCTGACTTCAGCCCACCAGCAGCATGTGGACTTATAAGCTTTCTAGCAGAGTTGGAGATCCCCAGGAAAAAGAAATCTCTTAAAATGAAATGAAACTTCAATCAACCAAGGCTTTCTAGCCTGATGTGAGTTGTCTTTACACACATATACCTTTTTAACAAAGAAGAAGAAAAGAATGGACATTGATAGAACTTGCATTCTGTGTTCATCACCAGGATAGTTGCTTTATAAATATCATTTTGTTTTTAGTCACAACCCAATGCAGCATTTTCCTTACTGACAAAGAACCTGAGGCATGGAGAATTTAAGCAACTCCCTGAAGGCCACCCAGCTAATCAGCAGTGGGAAAAGAATTTAATTCTAGATCTTTCATTCTAAAGCCCAGCTCCTTACACACGTTGGATGCTACTATTTCCAAAATGTCAACAACACTTTGGACTATCAACCTGTCTAAAGAGTATTTGAAGCAGTGATGCAGGCCTCTGAAGGAAAAGGTGCACATTTTCAACAATAAAAGAGAGACATTCCTTTAGTGTATCTCCACATTCCCTGAAGGGGAGCTGGAATGACATGACGGACTTGGCCTCAGGGCCCCAAGCCTTCCCTGTTGCAGTCTTCATGACACTCCTCAGAAGCAGCAACTCCAGCCATGTCTGGAACCATTCCTTACCAGACAGGAGGATATCATGGCCTCAACTCATGATCTGTACCAAGCCAAACCTCTTTTGGGGTACCCACCAAGCCTCAGGCCTCACCTTCTCTGCCCTGTTGTCCCTGCCCATCTGTCCTGGTTTTCTACTAGTTTCCACTACTGGACACTTGTCTGAGGCTGGGTCCCCACCTGGATCTTGTGGCCTCTTGCCCAGGGCTTGGAGGGAAGCTGCTCCCACACTTGAAGATGACAGCTGAGCATGGTCCTTTGTGGGCGTGCTGTCAGGAAGATGACAGTGCAATCTGTTTAATGTGCCAGTTGTCTCTGTGAGTCCCTCATCCGGATGAGCACTTGTCACACCCCTGCAGAGCCCCAGCTGGTTCTTAGAGAGGTGCTCCAGCTCTGTGATTACCTAATCTGGCTTCCCAATCTATCCCACAATGTGTCATTGCTGAGGTCCCTGTGGGTCTTGCAGATAAACTTGCTACAGTCATCCTACACAAAAAAGAAGCTCGTTATCATGAAACCGGCCTGCTTTTTAGCTCCTGGGCCCTAACTCACCCCAGATTGCTGCCAGCTCTTTTGTTTTCCCACTTAGACCAAAGGGATTGAGAAGCTTTCCCATTCCTTGGAGCTGCCACCCTCCATTCTAAGGCAGTCTCCCCCTTCACCCTGCTTGCTGCACCCCAGATGCTGCAAGGCCCATGTGCTGTTTTTGACTTCAGTACTTCAGATTGCTGTGGGAACACAGGAGGCAGCAGCCAGATGAGAAATTGAGTCTGACTCTGGAGTATTATAAAGTCCTTATAGTTACTGGCATTAGGTATAGGGTCTGTATTATTAAAGAGAAATTATTCACCAAACACTTGTTAAAAATGGCAAGACAGTTTATTTAAGAGCATTGCAATAGGTAAGTGCTATGGTCTCAATGTTTGTGTCTCCCTCAAATTCATAAGTTGAAACTTCACTTCCAAGATGAAGGAATTAGGAGGTGGGCACTTTAAGGGATGATTATGTCATAGGCCAGAGCCCTCATGAACGAGATCAGTGCCCTTCTAAAAGAGGCATTGGGAGAGACCCCTCACCTTTTCCATCATATGAGGACACAGCCAGGAAGCATCATCCACGAACCAGAAAATTGGCCCTTACCAGACACTGAATCTGCTGATGTCCTGACCATGGACTTCTGAGCCTTCTGAACTGTGAGAGATAAATTTCTGTTGTTTATAAGC</dnaseq>| | sequence = <dnaseq>AAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGTTAGGCTTGGCCACAAGAGACAAATTGCAAGGCATGGAGACATTTTTCTAACACTTGAAAATTCTATGCAAGAGCACCAGGCAGCTCAGTCACCTTGTCACTTATCTACTGGGTCACCTTGTTGGCATGGGATGCCAGCCAGGCTTGCAGCTGCTCCATCCTCCCCTGAATTTGTACTTCAGCTTCTCCACTCATGGCCTGCCCTGAGGACTTCATGGTTCAGCATCAGATATGAAGACGACAGCCCTATAGAGACTATTTAACCAGCTTCTAAGGTGGTTAAATATCTTACCAGCCTATGTAAGGCCGAATCCTACTAACAAAGCACTGGTATATGTAATATCCCAGTGGTTTGCTTCTCTAATTGAACCCTGACTACTACAGAAGTCCAGATACCACAGTCTGAGTAGTTCTTTAATCTGCTTATCTGGTGATTCCATCACAAATGGTTCAGTTGGGCAAAAGGCTCCAGTGAAGAGCTGTGAGGCTTATGTATGGGGACTCACCAGGGGCCAGCCCAGGCTGCCCACAAGACCATGAGCCACCCTGTGACTGAATGAAGTGGAGAGAAGGGAAAGTAGTTAAGAAATCAAGAAAAGTGTCTTTCAGCACCATGGCCAGAAGTTGTGCCACAGAATTGGAACAGGGAAACCCAGAGAGCCAGTGCTGTCCTAGTCCTAGTGCTGAATGATCCCATTGGTGTCCTTAGAAGGGCTCTGACTTCAGCCCACCAGCAGCATGTGGACTTATAAGCTTTCTAGCAGAGTTGGAGATCCCCAGGAAAAAGAAATCTCTTAAAATGAAATGAAACTTCAATCAACCAAGGCTTTCTAGCCTGATGTGAGTTGTCTTTACACACATATACCTTTTTAACAAAGAAGAAGAAAAGAATGGACATTGATAGAACTTGCATTCTGTGTTCATCACCAGGATAGTTGCTTTATAAATATCATTTTGTTTTTAGTCACAACCCAATGCAGCATTTTCCTTACTGACAAAGAACCTGAGGCATGGAGAATTTAAGCAACTCCCTGAAGGCCACCCAGCTAATCAGCAGTGGGAAAAGAATTTAATTCTAGATCTTTCATTCTAAAGCCCAGCTCCTTACACACGTTGGATGCTACTATTTCCAAAATGTCAACAACACTTTGGACTATCAACCTGTCTAAAGAGTATTTGAAGCAGTGATGCAGGCCTCTGAAGGAAAAGGTGCACATTTTCAACAATAAAAGAGAGACATTCCTTTAGTGTATCTCCACATTCCCTGAAGGGGAGCTGGAATGACATGACGGACTTGGCCTCAGGGCCCCAAGCCTTCCCTGTTGCAGTCTTCATGACACTCCTCAGAAGCAGCAACTCCAGCCATGTCTGGAACCATTCCTTACCAGACAGGAGGATATCATGGCCTCAACTCATGATCTGTACCAAGCCAAACCTCTTTTGGGGTACCCACCAAGCCTCAGGCCTCACCTTCTCTGCCCTGTTGTCCCTGCCCATCTGTCCTGGTTTTCTACTAGTTTCCACTACTGGACACTTGTCTGAGGCTGGGTCCCCACCTGGATCTTGTGGCCTCTTGCCCAGGGCTTGGAGGGAAGCTGCTCCCACACTTGAAGATGACAGCTGAGCATGGTCCTTTGTGGGCGTGCTGTCAGGAAGATGACAGTGCAATCTGTTTAATGTGCCAGTTGTCTCTGTGAGTCCCTCATCCGGATGAGCACTTGTCACACCCCTGCAGAGCCCCAGCTGGTTCTTAGAGAGGTGCTCCAGCTCTGTGATTACCTAATCTGGCTTCCCAATCTATCCCACAATGTGTCATTGCTGAGGTCCCTGTGGGTCTTGCAGATAAACTTGCTACAGTCATCCTACACAAAAAAGAAGCTCGTTATCATGAAACCGGCCTGCTTTTTAGCTCCTGGGCCCTAACTCACCCCAGATTGCTGCCAGCTCTTTTGTTTTCCCACTTAGACCAAAGGGATTGAGAAGCTTTCCCATTCCTTGGAGCTGCCACCCTCCATTCTAAGGCAGTCTCCCCCTTCACCCTGCTTGCTGCACCCCAGATGCTGCAAGGCCCATGTGCTGTTTTTGACTTCAGTACTTCAGATTGCTGTGGGAACACAGGAGGCAGCAGCCAGATGAGAAATTGAGTCTGACTCTGGAGTATTATAAAGTCCTTATAGTTACTGGCATTAGGTATAGGGTCTGTATTATTAAAGAGAAATTATTCACCAAACACTTGTTAAAAATGGCAAGACAGTTTATTTAAGAGCATTGCAATAGGTAAGTGCTATGGTCTCAATGTTTGTGTCTCCCTCAAATTCATAAGTTGAAACTTCACTTCCAAGATGAAGGAATTAGGAGGTGGGCACTTTAAGGGATGATTATGTCATAGGCCAGAGCCCTCATGAACGAGATCAGTGCCCTTCTAAAAGAGGCATTGGGAGAGACCCCTCACCTTTTCCATCATATGAGGACACAGCCAGGAAGCATCATCCACGAACCAGAAAATTGGCCCTTACCAGACACTGAATCTGCTGATGTCCTGACCATGGACTTCTGAGCCTTCTGAACTGTGAGAGATAAATTTCTGTTGTTTATAAGC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-RGR-1]][[Category:NONHSAG006398]][[Category:ENSG00000229404.1]] | + | [[Category:Intergenic]][[Category:lnc-RGR-1]][[Category:NONHSAG006398]][[Category:ENSG00000229404.1]][[Category:Transcripts]] |
Revision as of 10:19, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000415469.1 |
Source |
Gencode19 |
Same with |
lnc-RGR-1:1,NONHSAT015325 |
Classification |
intergenic |
Length |
2685 nt |
Genomic location |
chr10+:86039736..86054415 |
Exon number |
6 |
Exons |
86039736..86039821,86047980..86048176,86048350..86048536,86048731..86048800,86051163..86051893,86053002..86054415 |
Genome context |
|
Sequence |
000001 AAGATGGCCG AATAGGAACA GCTCCGGTCT ACAGCTCCCA GCGTGAGCGA CGCAGAAGAC GGGTGATTTC TGCATTTCCA 000080
000081 TCTGAGTTAG GCTTGGCCAC AAGAGACAAA TTGCAAGGCA TGGAGACATT TTTCTAACAC TTGAAAATTC TATGCAAGAG 000160 000161 CACCAGGCAG CTCAGTCACC TTGTCACTTA TCTACTGGGT CACCTTGTTG GCATGGGATG CCAGCCAGGC TTGCAGCTGC 000240 000241 TCCATCCTCC CCTGAATTTG TACTTCAGCT TCTCCACTCA TGGCCTGCCC TGAGGACTTC ATGGTTCAGC ATCAGATATG 000320 000321 AAGACGACAG CCCTATAGAG ACTATTTAAC CAGCTTCTAA GGTGGTTAAA TATCTTACCA GCCTATGTAA GGCCGAATCC 000400 000401 TACTAACAAA GCACTGGTAT ATGTAATATC CCAGTGGTTT GCTTCTCTAA TTGAACCCTG ACTACTACAG AAGTCCAGAT 000480 000481 ACCACAGTCT GAGTAGTTCT TTAATCTGCT TATCTGGTGA TTCCATCACA AATGGTTCAG TTGGGCAAAA GGCTCCAGTG 000560 000561 AAGAGCTGTG AGGCTTATGT ATGGGGACTC ACCAGGGGCC AGCCCAGGCT GCCCACAAGA CCATGAGCCA CCCTGTGACT 000640 000641 GAATGAAGTG GAGAGAAGGG AAAGTAGTTA AGAAATCAAG AAAAGTGTCT TTCAGCACCA TGGCCAGAAG TTGTGCCACA 000720 000721 GAATTGGAAC AGGGAAACCC AGAGAGCCAG TGCTGTCCTA GTCCTAGTGC TGAATGATCC CATTGGTGTC CTTAGAAGGG 000800 000801 CTCTGACTTC AGCCCACCAG CAGCATGTGG ACTTATAAGC TTTCTAGCAG AGTTGGAGAT CCCCAGGAAA AAGAAATCTC 000880 000881 TTAAAATGAA ATGAAACTTC AATCAACCAA GGCTTTCTAG CCTGATGTGA GTTGTCTTTA CACACATATA CCTTTTTAAC 000960 000961 AAAGAAGAAG AAAAGAATGG ACATTGATAG AACTTGCATT CTGTGTTCAT CACCAGGATA GTTGCTTTAT AAATATCATT 001040 001041 TTGTTTTTAG TCACAACCCA ATGCAGCATT TTCCTTACTG ACAAAGAACC TGAGGCATGG AGAATTTAAG CAACTCCCTG 001120 001121 AAGGCCACCC AGCTAATCAG CAGTGGGAAA AGAATTTAAT TCTAGATCTT TCATTCTAAA GCCCAGCTCC TTACACACGT 001200 001201 TGGATGCTAC TATTTCCAAA ATGTCAACAA CACTTTGGAC TATCAACCTG TCTAAAGAGT ATTTGAAGCA GTGATGCAGG 001280 001281 CCTCTGAAGG AAAAGGTGCA CATTTTCAAC AATAAAAGAG AGACATTCCT TTAGTGTATC TCCACATTCC CTGAAGGGGA 001360 001361 GCTGGAATGA CATGACGGAC TTGGCCTCAG GGCCCCAAGC CTTCCCTGTT GCAGTCTTCA TGACACTCCT CAGAAGCAGC 001440 001441 AACTCCAGCC ATGTCTGGAA CCATTCCTTA CCAGACAGGA GGATATCATG GCCTCAACTC ATGATCTGTA CCAAGCCAAA 001520 001521 CCTCTTTTGG GGTACCCACC AAGCCTCAGG CCTCACCTTC TCTGCCCTGT TGTCCCTGCC CATCTGTCCT GGTTTTCTAC 001600 001601 TAGTTTCCAC TACTGGACAC TTGTCTGAGG CTGGGTCCCC ACCTGGATCT TGTGGCCTCT TGCCCAGGGC TTGGAGGGAA 001680 001681 GCTGCTCCCA CACTTGAAGA TGACAGCTGA GCATGGTCCT TTGTGGGCGT GCTGTCAGGA AGATGACAGT GCAATCTGTT 001760 001761 TAATGTGCCA GTTGTCTCTG TGAGTCCCTC ATCCGGATGA GCACTTGTCA CACCCCTGCA GAGCCCCAGC TGGTTCTTAG 001840 001841 AGAGGTGCTC CAGCTCTGTG ATTACCTAAT CTGGCTTCCC AATCTATCCC ACAATGTGTC ATTGCTGAGG TCCCTGTGGG 001920 001921 TCTTGCAGAT AAACTTGCTA CAGTCATCCT ACACAAAAAA GAAGCTCGTT ATCATGAAAC CGGCCTGCTT TTTAGCTCCT 002000 002001 GGGCCCTAAC TCACCCCAGA TTGCTGCCAG CTCTTTTGTT TTCCCACTTA GACCAAAGGG ATTGAGAAGC TTTCCCATTC 002080 002081 CTTGGAGCTG CCACCCTCCA TTCTAAGGCA GTCTCCCCCT TCACCCTGCT TGCTGCACCC CAGATGCTGC AAGGCCCATG 002160 002161 TGCTGTTTTT GACTTCAGTA CTTCAGATTG CTGTGGGAAC ACAGGAGGCA GCAGCCAGAT GAGAAATTGA GTCTGACTCT 002240 002241 GGAGTATTAT AAAGTCCTTA TAGTTACTGG CATTAGGTAT AGGGTCTGTA TTATTAAAGA GAAATTATTC ACCAAACACT 002320 002321 TGTTAAAAAT GGCAAGACAG TTTATTTAAG AGCATTGCAA TAGGTAAGTG CTATGGTCTC AATGTTTGTG TCTCCCTCAA 002400 002401 ATTCATAAGT TGAAACTTCA CTTCCAAGAT GAAGGAATTA GGAGGTGGGC ACTTTAAGGG ATGATTATGT CATAGGCCAG 002480 002481 AGCCCTCATG AACGAGATCA GTGCCCTTCT AAAAGAGGCA TTGGGAGAGA CCCCTCACCT TTTCCATCAT ATGAGGACAC 002560 002561 AGCCAGGAAG CATCATCCAC GAACCAGAAA ATTGGCCCTT ACCAGACACT GAATCTGCTG ATGTCCTGAC CATGGACTTC 002640 002641 TGAGCCTTCT GAACTGTGAG AGATAAATTT CTGTTGTTTA TAAGC |
Predicted Small Protein
Name | ENST00000415469.1_smProtein_1796:2008 |
Length | 71 |
Molecular weight | 7974.4987 |
Aromaticity | 0.0714285714286 |
Instability index | 83.8442857143 |
Isoelectric point | 8.98773193359 |
Runs | 7 |
Runs residual | 0.0448373408769 |
Runs probability | 0.0704822469528 |
Amino acid sequence | MSTCHTPAEPQLVLREVLQLCDYLIWLPNLSHNVSLLRSLWVLQINLLQSSYTKKKLVIM KPACFLAPGP |
Secondary structure | LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHLLLLLLLEEEE LLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii iiiiiiiiii |