Difference between revisions of "NONHSAT035877"
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sequence = <dnaseq>TACTTTCTTTTCATATTTCAACTTTATTTAAAATATGAGGTTTTATGTCCAGAAGGGAGGGCAGTTGCCCATGGAAGGTGAAGTGAGGCACAATACTATTGGGTTGCGGGCCAAGTACACAGGGTTGCACTGTGAAGGAACTGAGGAGGTTCTGGGAGGGCCTGGTGACAACAATGGATTTGGGGAGATCCACAAAGGAAATTTTCATTTCCTCCCCAGGTTAGCTATTCAGTGGGTGGATTATTCAGTCTTTTTAGCAAGGTCACTGCTCCTTAGCAACATCAACAAAAGTGCCAAAGCTGAGGACACAGAGAATACCATCATTGTCTTTTGTTTCTCTTTATGCCTGGATGGGGAAAGGAATGGAAACTAATAGCAGAAAATGAAACATTTCTGATGTTATCCCTTGCCATGAAGAATCACGGGCTTGTGTAGAGACCTCTTTCTTTTCTTTTTTTTTTTGAGGGTCTCACTGTCACCAAGCTGGAGTGCAGTGGTGCGATCATAGCTCAGTAACCTCCAACTCCTGGGCTCAAGCGATCCTCCTGTCTCAGCTTCCTGAGTAGCTGGGAATACAGATGTGTGCCACCATGCCCAGCTAATTTTAAAAGTTAAGGTTTTAAATTTTGTTTTTAAAGAGGAAAAAAAATATAACATCATGGTTACACAGAGGCTCTGGAGATTCCCTGGGTTCACAATCCTACTTCTGCCATTTACTAGCTGTGCGATCTTGAACAAATTTCTGAGCTTCTCTGAGCCTGTTTCCTCATCTCTAAAACAGAGATAATGACAATGTTCTACTTACAGGGTTGTTTTGGGCATGCATGCAAACAAAACAGATTTTATGATCGAGTCATAGTTCTGGAAAGGAAGAAAAACCCAGATTTGCGCACACAAGTGTTAAGTAAATGTGAGCCCTCACTATTGTTCATACAACATGGCAGTGACACACATACATTAGACAAGAGATTATTACACACTGAGCCTCCACCCAGTCTCCCTATTATCCTCCCATGGGCTCCTAATTGATGACTAAACAGTGCATTGCTGGGTGGCTTCCAGTAGTTTCTTTCTTCACTTTGCTGCAACTTTGAACTGAAGGTGATCCACATGGTACATGACATTCTTCCTGTTTTCTTCACAAGACAAGGATGATGTTTAAATGGGCATTTGTTTGCGGAATGACTTGGAGAGTTCCTCTCTTTCAGCCATCTTTTCTCAAAGACTAAGGCTCTGGGAGATCCTTGTTCATTTGTAACATCAGGAACTGCTTCTTTTCCTCCTTCTCTCTTCTAGAAGACTGTCAAGGAGCCCGAGTGAGGGAAGCAGACCAACCATGGTCTTGGAGAAAAGAAAATAGGGTTTCCATCCCTTCTTTTTTTTTTTTTTTTTTACAACCAAGTGGATTGATTGAAATGCTTTGATTCTTCATTTGAAATGTTTCTATTCCATATACCCATTATCTTTTATCCTCACAAAAGCCCTTAACATTGTTTCCTTTAATCTTTGGGGTTCTTAAGCATCATTTCCACCAACAGAGATGTACCTACCCACAGTTGTCTCAGAGCATGGAGGCTGAAAGTCTGTGAGGACAAGAGTGAAATGGAGCAGAGGATAGGCTGTGGTTTGGAAGCGGCTCTGGAATACGCTGGGGGTGGCGGTGGGGCTGAAGGTTGGTTATGGGATGCTTCCTGGGCTCCGGAACATCTGTGCCAAAAACTGGAGGACCCATCCTCGGCTCCAGCCAGACGCTTGGGGTGCTATGTATTCTGAACCATAGCACTAGGTTGGAAAATTTGGCTCCTAATCTATACTCTGCCATGTACAGATCACAAAATATCATACAAGGAGCCTTAAAAGGTCATCTAACCTAAATCCAGTTTCCCAAGGAGAACACTGGGGCACAAAGAAGTGAGAGGTAACTCGCCCAAAGTTATATAGCTAGTCAGGGACTTCCTCTTCGGAGACAAAGGAAATCAGAATAGTGATTCTTCTGATTCACCGTCCCTCGACAAACAGTCCACAAAGTGCT</dnaseq>| | sequence = <dnaseq>TACTTTCTTTTCATATTTCAACTTTATTTAAAATATGAGGTTTTATGTCCAGAAGGGAGGGCAGTTGCCCATGGAAGGTGAAGTGAGGCACAATACTATTGGGTTGCGGGCCAAGTACACAGGGTTGCACTGTGAAGGAACTGAGGAGGTTCTGGGAGGGCCTGGTGACAACAATGGATTTGGGGAGATCCACAAAGGAAATTTTCATTTCCTCCCCAGGTTAGCTATTCAGTGGGTGGATTATTCAGTCTTTTTAGCAAGGTCACTGCTCCTTAGCAACATCAACAAAAGTGCCAAAGCTGAGGACACAGAGAATACCATCATTGTCTTTTGTTTCTCTTTATGCCTGGATGGGGAAAGGAATGGAAACTAATAGCAGAAAATGAAACATTTCTGATGTTATCCCTTGCCATGAAGAATCACGGGCTTGTGTAGAGACCTCTTTCTTTTCTTTTTTTTTTTGAGGGTCTCACTGTCACCAAGCTGGAGTGCAGTGGTGCGATCATAGCTCAGTAACCTCCAACTCCTGGGCTCAAGCGATCCTCCTGTCTCAGCTTCCTGAGTAGCTGGGAATACAGATGTGTGCCACCATGCCCAGCTAATTTTAAAAGTTAAGGTTTTAAATTTTGTTTTTAAAGAGGAAAAAAAATATAACATCATGGTTACACAGAGGCTCTGGAGATTCCCTGGGTTCACAATCCTACTTCTGCCATTTACTAGCTGTGCGATCTTGAACAAATTTCTGAGCTTCTCTGAGCCTGTTTCCTCATCTCTAAAACAGAGATAATGACAATGTTCTACTTACAGGGTTGTTTTGGGCATGCATGCAAACAAAACAGATTTTATGATCGAGTCATAGTTCTGGAAAGGAAGAAAAACCCAGATTTGCGCACACAAGTGTTAAGTAAATGTGAGCCCTCACTATTGTTCATACAACATGGCAGTGACACACATACATTAGACAAGAGATTATTACACACTGAGCCTCCACCCAGTCTCCCTATTATCCTCCCATGGGCTCCTAATTGATGACTAAACAGTGCATTGCTGGGTGGCTTCCAGTAGTTTCTTTCTTCACTTTGCTGCAACTTTGAACTGAAGGTGATCCACATGGTACATGACATTCTTCCTGTTTTCTTCACAAGACAAGGATGATGTTTAAATGGGCATTTGTTTGCGGAATGACTTGGAGAGTTCCTCTCTTTCAGCCATCTTTTCTCAAAGACTAAGGCTCTGGGAGATCCTTGTTCATTTGTAACATCAGGAACTGCTTCTTTTCCTCCTTCTCTCTTCTAGAAGACTGTCAAGGAGCCCGAGTGAGGGAAGCAGACCAACCATGGTCTTGGAGAAAAGAAAATAGGGTTTCCATCCCTTCTTTTTTTTTTTTTTTTTTACAACCAAGTGGATTGATTGAAATGCTTTGATTCTTCATTTGAAATGTTTCTATTCCATATACCCATTATCTTTTATCCTCACAAAAGCCCTTAACATTGTTTCCTTTAATCTTTGGGGTTCTTAAGCATCATTTCCACCAACAGAGATGTACCTACCCACAGTTGTCTCAGAGCATGGAGGCTGAAAGTCTGTGAGGACAAGAGTGAAATGGAGCAGAGGATAGGCTGTGGTTTGGAAGCGGCTCTGGAATACGCTGGGGGTGGCGGTGGGGCTGAAGGTTGGTTATGGGATGCTTCCTGGGCTCCGGAACATCTGTGCCAAAAACTGGAGGACCCATCCTCGGCTCCAGCCAGACGCTTGGGGTGCTATGTATTCTGAACCATAGCACTAGGTTGGAAAATTTGGCTCCTAATCTATACTCTGCCATGTACAGATCACAAAATATCATACAAGGAGCCTTAAAAGGTCATCTAACCTAAATCCAGTTTCCCAAGGAGAACACTGGGGCACAAAGAAGTGAGAGGTAACTCGCCCAAAGTTATATAGCTAGTCAGGGACTTCCTCTTCGGAGACAAAGGAAATCAGAATAGTGATTCTTCTGATTCACCGTCCCTCGACAAACAGTCCACAAAGTGCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG014487]] | + | [[Category:Intergenic]][[Category:NONHSAG014487]][[Category:Transcripts]] |
Revision as of 10:20, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT035877 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2032 nt |
Genomic location |
chr14+:23765124..23769797 |
Exon number |
4 |
Exons |
23765124..23765736,23767509..23768128,23768610..23768752,23769142..23769797 |
Genome context |
|
Sequence |
000001 TACTTTCTTT TCATATTTCA ACTTTATTTA AAATATGAGG TTTTATGTCC AGAAGGGAGG GCAGTTGCCC ATGGAAGGTG 000080
000081 AAGTGAGGCA CAATACTATT GGGTTGCGGG CCAAGTACAC AGGGTTGCAC TGTGAAGGAA CTGAGGAGGT TCTGGGAGGG 000160 000161 CCTGGTGACA ACAATGGATT TGGGGAGATC CACAAAGGAA ATTTTCATTT CCTCCCCAGG TTAGCTATTC AGTGGGTGGA 000240 000241 TTATTCAGTC TTTTTAGCAA GGTCACTGCT CCTTAGCAAC ATCAACAAAA GTGCCAAAGC TGAGGACACA GAGAATACCA 000320 000321 TCATTGTCTT TTGTTTCTCT TTATGCCTGG ATGGGGAAAG GAATGGAAAC TAATAGCAGA AAATGAAACA TTTCTGATGT 000400 000401 TATCCCTTGC CATGAAGAAT CACGGGCTTG TGTAGAGACC TCTTTCTTTT CTTTTTTTTT TTGAGGGTCT CACTGTCACC 000480 000481 AAGCTGGAGT GCAGTGGTGC GATCATAGCT CAGTAACCTC CAACTCCTGG GCTCAAGCGA TCCTCCTGTC TCAGCTTCCT 000560 000561 GAGTAGCTGG GAATACAGAT GTGTGCCACC ATGCCCAGCT AATTTTAAAA GTTAAGGTTT TAAATTTTGT TTTTAAAGAG 000640 000641 GAAAAAAAAT ATAACATCAT GGTTACACAG AGGCTCTGGA GATTCCCTGG GTTCACAATC CTACTTCTGC CATTTACTAG 000720 000721 CTGTGCGATC TTGAACAAAT TTCTGAGCTT CTCTGAGCCT GTTTCCTCAT CTCTAAAACA GAGATAATGA CAATGTTCTA 000800 000801 CTTACAGGGT TGTTTTGGGC ATGCATGCAA ACAAAACAGA TTTTATGATC GAGTCATAGT TCTGGAAAGG AAGAAAAACC 000880 000881 CAGATTTGCG CACACAAGTG TTAAGTAAAT GTGAGCCCTC ACTATTGTTC ATACAACATG GCAGTGACAC ACATACATTA 000960 000961 GACAAGAGAT TATTACACAC TGAGCCTCCA CCCAGTCTCC CTATTATCCT CCCATGGGCT CCTAATTGAT GACTAAACAG 001040 001041 TGCATTGCTG GGTGGCTTCC AGTAGTTTCT TTCTTCACTT TGCTGCAACT TTGAACTGAA GGTGATCCAC ATGGTACATG 001120 001121 ACATTCTTCC TGTTTTCTTC ACAAGACAAG GATGATGTTT AAATGGGCAT TTGTTTGCGG AATGACTTGG AGAGTTCCTC 001200 001201 TCTTTCAGCC ATCTTTTCTC AAAGACTAAG GCTCTGGGAG ATCCTTGTTC ATTTGTAACA TCAGGAACTG CTTCTTTTCC 001280 001281 TCCTTCTCTC TTCTAGAAGA CTGTCAAGGA GCCCGAGTGA GGGAAGCAGA CCAACCATGG TCTTGGAGAA AAGAAAATAG 001360 001361 GGTTTCCATC CCTTCTTTTT TTTTTTTTTT TTTACAACCA AGTGGATTGA TTGAAATGCT TTGATTCTTC ATTTGAAATG 001440 001441 TTTCTATTCC ATATACCCAT TATCTTTTAT CCTCACAAAA GCCCTTAACA TTGTTTCCTT TAATCTTTGG GGTTCTTAAG 001520 001521 CATCATTTCC ACCAACAGAG ATGTACCTAC CCACAGTTGT CTCAGAGCAT GGAGGCTGAA AGTCTGTGAG GACAAGAGTG 001600 001601 AAATGGAGCA GAGGATAGGC TGTGGTTTGG AAGCGGCTCT GGAATACGCT GGGGGTGGCG GTGGGGCTGA AGGTTGGTTA 001680 001681 TGGGATGCTT CCTGGGCTCC GGAACATCTG TGCCAAAAAC TGGAGGACCC ATCCTCGGCT CCAGCCAGAC GCTTGGGGTG 001760 001761 CTATGTATTC TGAACCATAG CACTAGGTTG GAAAATTTGG CTCCTAATCT ATACTCTGCC ATGTACAGAT CACAAAATAT 001840 001841 CATACAAGGA GCCTTAAAAG GTCATCTAAC CTAAATCCAG TTTCCCAAGG AGAACACTGG GGCACAAAGA AGTGAGAGGT 001920 001921 AACTCGCCCA AAGTTATATA GCTAGTCAGG GACTTCCTCT TCGGAGACAA AGGAAATCAG AATAGTGATT CTTCTGATTC 002000 002001 ACCGTCCCTC GACAAACAGT CCACAAAGTG CT |
Predicted Small Protein
Name | NONHSAT035877_smProtein_1679:1873 |
Length | 65 |
Molecular weight | 6688.6899 |
Aromaticity | 0.046875 |
Instability index | 40.99375 |
Isoelectric point | 9.30181884766 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0375473512729 |
Amino acid sequence | MGCFLGSGTSVPKTGGPILGSSQTLGVLCILNHSTRLENLAPNLYSAMYRSQNIIQGALK GHLT |
Secondary structure | LLEEELLLLLLLLLLLEEELLLLEEEEEEEELLLLLHHHHHHHHHHHHHHHHHHHHHHHH LLLL |
PRMN | - |
PiMo | - |