Difference between revisions of "NONHSAT035877"

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sequence = <dnaseq>TACTTTCTTTTCATATTTCAACTTTATTTAAAATATGAGGTTTTATGTCCAGAAGGGAGGGCAGTTGCCCATGGAAGGTGAAGTGAGGCACAATACTATTGGGTTGCGGGCCAAGTACACAGGGTTGCACTGTGAAGGAACTGAGGAGGTTCTGGGAGGGCCTGGTGACAACAATGGATTTGGGGAGATCCACAAAGGAAATTTTCATTTCCTCCCCAGGTTAGCTATTCAGTGGGTGGATTATTCAGTCTTTTTAGCAAGGTCACTGCTCCTTAGCAACATCAACAAAAGTGCCAAAGCTGAGGACACAGAGAATACCATCATTGTCTTTTGTTTCTCTTTATGCCTGGATGGGGAAAGGAATGGAAACTAATAGCAGAAAATGAAACATTTCTGATGTTATCCCTTGCCATGAAGAATCACGGGCTTGTGTAGAGACCTCTTTCTTTTCTTTTTTTTTTTGAGGGTCTCACTGTCACCAAGCTGGAGTGCAGTGGTGCGATCATAGCTCAGTAACCTCCAACTCCTGGGCTCAAGCGATCCTCCTGTCTCAGCTTCCTGAGTAGCTGGGAATACAGATGTGTGCCACCATGCCCAGCTAATTTTAAAAGTTAAGGTTTTAAATTTTGTTTTTAAAGAGGAAAAAAAATATAACATCATGGTTACACAGAGGCTCTGGAGATTCCCTGGGTTCACAATCCTACTTCTGCCATTTACTAGCTGTGCGATCTTGAACAAATTTCTGAGCTTCTCTGAGCCTGTTTCCTCATCTCTAAAACAGAGATAATGACAATGTTCTACTTACAGGGTTGTTTTGGGCATGCATGCAAACAAAACAGATTTTATGATCGAGTCATAGTTCTGGAAAGGAAGAAAAACCCAGATTTGCGCACACAAGTGTTAAGTAAATGTGAGCCCTCACTATTGTTCATACAACATGGCAGTGACACACATACATTAGACAAGAGATTATTACACACTGAGCCTCCACCCAGTCTCCCTATTATCCTCCCATGGGCTCCTAATTGATGACTAAACAGTGCATTGCTGGGTGGCTTCCAGTAGTTTCTTTCTTCACTTTGCTGCAACTTTGAACTGAAGGTGATCCACATGGTACATGACATTCTTCCTGTTTTCTTCACAAGACAAGGATGATGTTTAAATGGGCATTTGTTTGCGGAATGACTTGGAGAGTTCCTCTCTTTCAGCCATCTTTTCTCAAAGACTAAGGCTCTGGGAGATCCTTGTTCATTTGTAACATCAGGAACTGCTTCTTTTCCTCCTTCTCTCTTCTAGAAGACTGTCAAGGAGCCCGAGTGAGGGAAGCAGACCAACCATGGTCTTGGAGAAAAGAAAATAGGGTTTCCATCCCTTCTTTTTTTTTTTTTTTTTTACAACCAAGTGGATTGATTGAAATGCTTTGATTCTTCATTTGAAATGTTTCTATTCCATATACCCATTATCTTTTATCCTCACAAAAGCCCTTAACATTGTTTCCTTTAATCTTTGGGGTTCTTAAGCATCATTTCCACCAACAGAGATGTACCTACCCACAGTTGTCTCAGAGCATGGAGGCTGAAAGTCTGTGAGGACAAGAGTGAAATGGAGCAGAGGATAGGCTGTGGTTTGGAAGCGGCTCTGGAATACGCTGGGGGTGGCGGTGGGGCTGAAGGTTGGTTATGGGATGCTTCCTGGGCTCCGGAACATCTGTGCCAAAAACTGGAGGACCCATCCTCGGCTCCAGCCAGACGCTTGGGGTGCTATGTATTCTGAACCATAGCACTAGGTTGGAAAATTTGGCTCCTAATCTATACTCTGCCATGTACAGATCACAAAATATCATACAAGGAGCCTTAAAAGGTCATCTAACCTAAATCCAGTTTCCCAAGGAGAACACTGGGGCACAAAGAAGTGAGAGGTAACTCGCCCAAAGTTATATAGCTAGTCAGGGACTTCCTCTTCGGAGACAAAGGAAATCAGAATAGTGATTCTTCTGATTCACCGTCCCTCGACAAACAGTCCACAAAGTGCT</dnaseq>|
 
sequence = <dnaseq>TACTTTCTTTTCATATTTCAACTTTATTTAAAATATGAGGTTTTATGTCCAGAAGGGAGGGCAGTTGCCCATGGAAGGTGAAGTGAGGCACAATACTATTGGGTTGCGGGCCAAGTACACAGGGTTGCACTGTGAAGGAACTGAGGAGGTTCTGGGAGGGCCTGGTGACAACAATGGATTTGGGGAGATCCACAAAGGAAATTTTCATTTCCTCCCCAGGTTAGCTATTCAGTGGGTGGATTATTCAGTCTTTTTAGCAAGGTCACTGCTCCTTAGCAACATCAACAAAAGTGCCAAAGCTGAGGACACAGAGAATACCATCATTGTCTTTTGTTTCTCTTTATGCCTGGATGGGGAAAGGAATGGAAACTAATAGCAGAAAATGAAACATTTCTGATGTTATCCCTTGCCATGAAGAATCACGGGCTTGTGTAGAGACCTCTTTCTTTTCTTTTTTTTTTTGAGGGTCTCACTGTCACCAAGCTGGAGTGCAGTGGTGCGATCATAGCTCAGTAACCTCCAACTCCTGGGCTCAAGCGATCCTCCTGTCTCAGCTTCCTGAGTAGCTGGGAATACAGATGTGTGCCACCATGCCCAGCTAATTTTAAAAGTTAAGGTTTTAAATTTTGTTTTTAAAGAGGAAAAAAAATATAACATCATGGTTACACAGAGGCTCTGGAGATTCCCTGGGTTCACAATCCTACTTCTGCCATTTACTAGCTGTGCGATCTTGAACAAATTTCTGAGCTTCTCTGAGCCTGTTTCCTCATCTCTAAAACAGAGATAATGACAATGTTCTACTTACAGGGTTGTTTTGGGCATGCATGCAAACAAAACAGATTTTATGATCGAGTCATAGTTCTGGAAAGGAAGAAAAACCCAGATTTGCGCACACAAGTGTTAAGTAAATGTGAGCCCTCACTATTGTTCATACAACATGGCAGTGACACACATACATTAGACAAGAGATTATTACACACTGAGCCTCCACCCAGTCTCCCTATTATCCTCCCATGGGCTCCTAATTGATGACTAAACAGTGCATTGCTGGGTGGCTTCCAGTAGTTTCTTTCTTCACTTTGCTGCAACTTTGAACTGAAGGTGATCCACATGGTACATGACATTCTTCCTGTTTTCTTCACAAGACAAGGATGATGTTTAAATGGGCATTTGTTTGCGGAATGACTTGGAGAGTTCCTCTCTTTCAGCCATCTTTTCTCAAAGACTAAGGCTCTGGGAGATCCTTGTTCATTTGTAACATCAGGAACTGCTTCTTTTCCTCCTTCTCTCTTCTAGAAGACTGTCAAGGAGCCCGAGTGAGGGAAGCAGACCAACCATGGTCTTGGAGAAAAGAAAATAGGGTTTCCATCCCTTCTTTTTTTTTTTTTTTTTTACAACCAAGTGGATTGATTGAAATGCTTTGATTCTTCATTTGAAATGTTTCTATTCCATATACCCATTATCTTTTATCCTCACAAAAGCCCTTAACATTGTTTCCTTTAATCTTTGGGGTTCTTAAGCATCATTTCCACCAACAGAGATGTACCTACCCACAGTTGTCTCAGAGCATGGAGGCTGAAAGTCTGTGAGGACAAGAGTGAAATGGAGCAGAGGATAGGCTGTGGTTTGGAAGCGGCTCTGGAATACGCTGGGGGTGGCGGTGGGGCTGAAGGTTGGTTATGGGATGCTTCCTGGGCTCCGGAACATCTGTGCCAAAAACTGGAGGACCCATCCTCGGCTCCAGCCAGACGCTTGGGGTGCTATGTATTCTGAACCATAGCACTAGGTTGGAAAATTTGGCTCCTAATCTATACTCTGCCATGTACAGATCACAAAATATCATACAAGGAGCCTTAAAAGGTCATCTAACCTAAATCCAGTTTCCCAAGGAGAACACTGGGGCACAAAGAAGTGAGAGGTAACTCGCCCAAAGTTATATAGCTAGTCAGGGACTTCCTCTTCGGAGACAAAGGAAATCAGAATAGTGATTCTTCTGATTCACCGTCCCTCGACAAACAGTCCACAAAGTGCT</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:NONHSAG014487]]
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[[Category:Intergenic]][[Category:NONHSAG014487]][[Category:Transcripts]]

Revision as of 10:20, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT035877

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2032 nt

Genomic location

chr14+:23765124..23769797

Exon number

4

Exons

23765124..23765736,23767509..23768128,23768610..23768752,23769142..23769797

Genome context

Sequence
000001 TACTTTCTTT TCATATTTCA ACTTTATTTA AAATATGAGG TTTTATGTCC AGAAGGGAGG GCAGTTGCCC ATGGAAGGTG 000080
000081 AAGTGAGGCA CAATACTATT GGGTTGCGGG CCAAGTACAC AGGGTTGCAC TGTGAAGGAA CTGAGGAGGT TCTGGGAGGG 000160
000161 CCTGGTGACA ACAATGGATT TGGGGAGATC CACAAAGGAA ATTTTCATTT CCTCCCCAGG TTAGCTATTC AGTGGGTGGA 000240
000241 TTATTCAGTC TTTTTAGCAA GGTCACTGCT CCTTAGCAAC ATCAACAAAA GTGCCAAAGC TGAGGACACA GAGAATACCA 000320
000321 TCATTGTCTT TTGTTTCTCT TTATGCCTGG ATGGGGAAAG GAATGGAAAC TAATAGCAGA AAATGAAACA TTTCTGATGT 000400
000401 TATCCCTTGC CATGAAGAAT CACGGGCTTG TGTAGAGACC TCTTTCTTTT CTTTTTTTTT TTGAGGGTCT CACTGTCACC 000480
000481 AAGCTGGAGT GCAGTGGTGC GATCATAGCT CAGTAACCTC CAACTCCTGG GCTCAAGCGA TCCTCCTGTC TCAGCTTCCT 000560
000561 GAGTAGCTGG GAATACAGAT GTGTGCCACC ATGCCCAGCT AATTTTAAAA GTTAAGGTTT TAAATTTTGT TTTTAAAGAG 000640
000641 GAAAAAAAAT ATAACATCAT GGTTACACAG AGGCTCTGGA GATTCCCTGG GTTCACAATC CTACTTCTGC CATTTACTAG 000720
000721 CTGTGCGATC TTGAACAAAT TTCTGAGCTT CTCTGAGCCT GTTTCCTCAT CTCTAAAACA GAGATAATGA CAATGTTCTA 000800
000801 CTTACAGGGT TGTTTTGGGC ATGCATGCAA ACAAAACAGA TTTTATGATC GAGTCATAGT TCTGGAAAGG AAGAAAAACC 000880
000881 CAGATTTGCG CACACAAGTG TTAAGTAAAT GTGAGCCCTC ACTATTGTTC ATACAACATG GCAGTGACAC ACATACATTA 000960
000961 GACAAGAGAT TATTACACAC TGAGCCTCCA CCCAGTCTCC CTATTATCCT CCCATGGGCT CCTAATTGAT GACTAAACAG 001040
001041 TGCATTGCTG GGTGGCTTCC AGTAGTTTCT TTCTTCACTT TGCTGCAACT TTGAACTGAA GGTGATCCAC ATGGTACATG 001120
001121 ACATTCTTCC TGTTTTCTTC ACAAGACAAG GATGATGTTT AAATGGGCAT TTGTTTGCGG AATGACTTGG AGAGTTCCTC 001200
001201 TCTTTCAGCC ATCTTTTCTC AAAGACTAAG GCTCTGGGAG ATCCTTGTTC ATTTGTAACA TCAGGAACTG CTTCTTTTCC 001280
001281 TCCTTCTCTC TTCTAGAAGA CTGTCAAGGA GCCCGAGTGA GGGAAGCAGA CCAACCATGG TCTTGGAGAA AAGAAAATAG 001360
001361 GGTTTCCATC CCTTCTTTTT TTTTTTTTTT TTTACAACCA AGTGGATTGA TTGAAATGCT TTGATTCTTC ATTTGAAATG 001440
001441 TTTCTATTCC ATATACCCAT TATCTTTTAT CCTCACAAAA GCCCTTAACA TTGTTTCCTT TAATCTTTGG GGTTCTTAAG 001520
001521 CATCATTTCC ACCAACAGAG ATGTACCTAC CCACAGTTGT CTCAGAGCAT GGAGGCTGAA AGTCTGTGAG GACAAGAGTG 001600
001601 AAATGGAGCA GAGGATAGGC TGTGGTTTGG AAGCGGCTCT GGAATACGCT GGGGGTGGCG GTGGGGCTGA AGGTTGGTTA 001680
001681 TGGGATGCTT CCTGGGCTCC GGAACATCTG TGCCAAAAAC TGGAGGACCC ATCCTCGGCT CCAGCCAGAC GCTTGGGGTG 001760
001761 CTATGTATTC TGAACCATAG CACTAGGTTG GAAAATTTGG CTCCTAATCT ATACTCTGCC ATGTACAGAT CACAAAATAT 001840
001841 CATACAAGGA GCCTTAAAAG GTCATCTAAC CTAAATCCAG TTTCCCAAGG AGAACACTGG GGCACAAAGA AGTGAGAGGT 001920
001921 AACTCGCCCA AAGTTATATA GCTAGTCAGG GACTTCCTCT TCGGAGACAA AGGAAATCAG AATAGTGATT CTTCTGATTC 002000
002001 ACCGTCCCTC GACAAACAGT CCACAAAGTG CT
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Predicted Small Protein

Name NONHSAT035877_smProtein_1679:1873
Length 65
Molecular weight 6688.6899
Aromaticity 0.046875
Instability index 40.99375
Isoelectric point 9.30181884766
Runs 9
Runs residual 0.00796875
Runs probability 0.0375473512729
Amino acid sequence MGCFLGSGTSVPKTGGPILGSSQTLGVLCILNHSTRLENLAPNLYSAMYRSQNIIQGALK
GHLT
Secondary structure LLEEELLLLLLLLLLLEEELLLLEEEEEEEELLLLLHHHHHHHHHHHHHHHHHHHHHHHH
LLLL
PRMN -
PiMo -