Difference between revisions of "NONHSAT004413"

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sequence = <dnaseq>CAGGACTGCAGGCTGGGGCTCCGCTCCCCGGCGGGAGCCCGCGCGTGGTTCCCAGCGAAGTCCCCGCGCGGCTGGGCCCAGCGTGAGTATTCTCCGCCCGCTGTCCTCCCCCTGGAGGCGGCAGCGCCCGTTTATTTGAGCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGGGTACCTACTCTTCATATTATTCTACCAACTTAATACATAAACATATTTTTAGCACAATATGAACCTGTTCTATGTGTGTTTAAAAGCCTCCAGCAGCAACTTTTTTCTCTCCCACTGTCCAAAGTTGGGTTTTCCCCATCCCTTAAAAAACAAAACAAAAAAACCTTTCTTCACTCCAAATTGTCCCCCTGGTGTGTGGTTTTGGTCTTTCTCATTACTTCTTGCATCTTGCTACATGTTCTGCATTTGCTCAGAGCCACTGGGTGCTAAGGAATTTGGTCTGCTGCTCCTCTGGGAAAGTTTGGTAAGCTGGTACAAGGAGGTGATGAACAAGGCTAAATGAAAATCATACATAAACTTCCCAATATTTGTGAACATGTTCTTTAACATACCATACATAGTTTCTATGTATATGTAACATAGCAAAACAAACTTGCTAAGGTATAATTAATTGGTATGCATGCCTTCATAAATATTCACCATCAGAAGAAACCTAGAATGAAAGGTTGTGAAAGAACCCAGGAATGAGAAAGACTTTATTGACTAAAGGCCATGTCTATGTAGGGGCAACAATGAAGCTGTGGGTGAGCAAATGAAGCTTCATCAGGAGTTTAGTATCCTTATGTAGCATTACCTAAGAATGCTACCATAGTAAATTTCTGAAGTACTTTACCTGTTACAAAGAACGTTTGTAATCTCCTTTTCTTATTTGATCTTGCCCTGGCTTTAGTCAGGAACACCTGCTCAGTTAGAAATGTATTCGGTGGGTATGTACGCAGTTGGAGAATGTGCCCCAACACACGCCGCCTTTGGCCTGTATGTTGGAGTCCTAGAGAGGCAGACAATGTTGATGAGCTTGGTACCAGCATGGTGCGCCATTCATCCGGACACAATTTCTGATAAAGAGGGTCACAACTGGGAGAAACCTCAGATTCTACTTGCTTCTCTTCTCCACGTTATTAGACTTTTTTTCCCCTCTTGAATTTTATAAGCACACTCCTTTTAAAACAATTAATTAATAACGAGCACTGGGATTTGATGTAGAATTGCGTATTTGTAACTGCAATGGCACTGGTTTTCAACTACCCTGTAACAAGGAAGCAATTCTAACCAGCAAAAGAGGCAGACGTGTTTCTGTGCAACATCACAGGCGTGTGAAATTGTTCAGATATTGAGATATCAGGAGTGATATAAATTGGAAATTTAACCAAAAATATTTTCCATCAGTGAACAAAGCCGATTTTAAAGTGCCTCTTGCATTTTTCAGATCTTTCTCTTTCTTTTTCCCAAAGTCACATTGTAGTTTCTGATAAAGGAACACACTGGGAAAACTAAGCACATATTTAA</dnaseq>|
 
sequence = <dnaseq>CAGGACTGCAGGCTGGGGCTCCGCTCCCCGGCGGGAGCCCGCGCGTGGTTCCCAGCGAAGTCCCCGCGCGGCTGGGCCCAGCGTGAGTATTCTCCGCCCGCTGTCCTCCCCCTGGAGGCGGCAGCGCCCGTTTATTTGAGCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGGGTACCTACTCTTCATATTATTCTACCAACTTAATACATAAACATATTTTTAGCACAATATGAACCTGTTCTATGTGTGTTTAAAAGCCTCCAGCAGCAACTTTTTTCTCTCCCACTGTCCAAAGTTGGGTTTTCCCCATCCCTTAAAAAACAAAACAAAAAAACCTTTCTTCACTCCAAATTGTCCCCCTGGTGTGTGGTTTTGGTCTTTCTCATTACTTCTTGCATCTTGCTACATGTTCTGCATTTGCTCAGAGCCACTGGGTGCTAAGGAATTTGGTCTGCTGCTCCTCTGGGAAAGTTTGGTAAGCTGGTACAAGGAGGTGATGAACAAGGCTAAATGAAAATCATACATAAACTTCCCAATATTTGTGAACATGTTCTTTAACATACCATACATAGTTTCTATGTATATGTAACATAGCAAAACAAACTTGCTAAGGTATAATTAATTGGTATGCATGCCTTCATAAATATTCACCATCAGAAGAAACCTAGAATGAAAGGTTGTGAAAGAACCCAGGAATGAGAAAGACTTTATTGACTAAAGGCCATGTCTATGTAGGGGCAACAATGAAGCTGTGGGTGAGCAAATGAAGCTTCATCAGGAGTTTAGTATCCTTATGTAGCATTACCTAAGAATGCTACCATAGTAAATTTCTGAAGTACTTTACCTGTTACAAAGAACGTTTGTAATCTCCTTTTCTTATTTGATCTTGCCCTGGCTTTAGTCAGGAACACCTGCTCAGTTAGAAATGTATTCGGTGGGTATGTACGCAGTTGGAGAATGTGCCCCAACACACGCCGCCTTTGGCCTGTATGTTGGAGTCCTAGAGAGGCAGACAATGTTGATGAGCTTGGTACCAGCATGGTGCGCCATTCATCCGGACACAATTTCTGATAAAGAGGGTCACAACTGGGAGAAACCTCAGATTCTACTTGCTTCTCTTCTCCACGTTATTAGACTTTTTTTCCCCTCTTGAATTTTATAAGCACACTCCTTTTAAAACAATTAATTAATAACGAGCACTGGGATTTGATGTAGAATTGCGTATTTGTAACTGCAATGGCACTGGTTTTCAACTACCCTGTAACAAGGAAGCAATTCTAACCAGCAAAAGAGGCAGACGTGTTTCTGTGCAACATCACAGGCGTGTGAAATTGTTCAGATATTGAGATATCAGGAGTGATATAAATTGGAAATTTAACCAAAAATATTTTCCATCAGTGAACAAAGCCGATTTTAAAGTGCCTCTTGCATTTTTCAGATCTTTCTCTTTCTTTTTCCCAAAGTCACATTGTAGTTTCTGATAAAGGAACACACTGGGAAAACTAAGCACATATTTAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG002048]]
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[[Category:Intergenic]][[Category:NONHSAG002048]][[Category:Transcripts]]

Revision as of 10:26, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004413

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1753 nt

Genomic location

chr1-:91296140..91317179

Exon number

2

Exons

91296140..91297753,91317041..91317179

Genome context

Sequence
000001 CAGGACTGCA GGCTGGGGCT CCGCTCCCCG GCGGGAGCCC GCGCGTGGTT CCCAGCGAAG TCCCCGCGCG GCTGGGCCCA 000080
000081 GCGTGAGTAT TCTCCGCCCG CTGTCCTCCC CCTGGAGGCG GCAGCGCCCG TTTATTTGAG CTTCTAATGT GAGGAAAAAC 000160
000161 ACGGAATGAC AAGTGTGGGA AAGAGCAAGC ACTAAATTAC TGTCAGAAAA ATAAACGGAG TAGCACAGTG CTGCTCGGTG 000240
000241 ATTTACGGGG GCAATTAGTC ACCACCCCAC GGCGCTGCTG AGGACAGCAC GGCAGCAGAC AAGTCAGGCC CATGAGGAAG 000320
000321 AAGAGGCTTT GCACTGCTCT CCAGACAACT TTTCAAACAA CAAGAGAGGA TATTTGAGCA CATTAGGTTT TGTGTCTTCA 000400
000401 TTCTGGGTAC CTACTCTTCA TATTATTCTA CCAACTTAAT ACATAAACAT ATTTTTAGCA CAATATGAAC CTGTTCTATG 000480
000481 TGTGTTTAAA AGCCTCCAGC AGCAACTTTT TTCTCTCCCA CTGTCCAAAG TTGGGTTTTC CCCATCCCTT AAAAAACAAA 000560
000561 ACAAAAAAAC CTTTCTTCAC TCCAAATTGT CCCCCTGGTG TGTGGTTTTG GTCTTTCTCA TTACTTCTTG CATCTTGCTA 000640
000641 CATGTTCTGC ATTTGCTCAG AGCCACTGGG TGCTAAGGAA TTTGGTCTGC TGCTCCTCTG GGAAAGTTTG GTAAGCTGGT 000720
000721 ACAAGGAGGT GATGAACAAG GCTAAATGAA AATCATACAT AAACTTCCCA ATATTTGTGA ACATGTTCTT TAACATACCA 000800
000801 TACATAGTTT CTATGTATAT GTAACATAGC AAAACAAACT TGCTAAGGTA TAATTAATTG GTATGCATGC CTTCATAAAT 000880
000881 ATTCACCATC AGAAGAAACC TAGAATGAAA GGTTGTGAAA GAACCCAGGA ATGAGAAAGA CTTTATTGAC TAAAGGCCAT 000960
000961 GTCTATGTAG GGGCAACAAT GAAGCTGTGG GTGAGCAAAT GAAGCTTCAT CAGGAGTTTA GTATCCTTAT GTAGCATTAC 001040
001041 CTAAGAATGC TACCATAGTA AATTTCTGAA GTACTTTACC TGTTACAAAG AACGTTTGTA ATCTCCTTTT CTTATTTGAT 001120
001121 CTTGCCCTGG CTTTAGTCAG GAACACCTGC TCAGTTAGAA ATGTATTCGG TGGGTATGTA CGCAGTTGGA GAATGTGCCC 001200
001201 CAACACACGC CGCCTTTGGC CTGTATGTTG GAGTCCTAGA GAGGCAGACA ATGTTGATGA GCTTGGTACC AGCATGGTGC 001280
001281 GCCATTCATC CGGACACAAT TTCTGATAAA GAGGGTCACA ACTGGGAGAA ACCTCAGATT CTACTTGCTT CTCTTCTCCA 001360
001361 CGTTATTAGA CTTTTTTTCC CCTCTTGAAT TTTATAAGCA CACTCCTTTT AAAACAATTA ATTAATAACG AGCACTGGGA 001440
001441 TTTGATGTAG AATTGCGTAT TTGTAACTGC AATGGCACTG GTTTTCAACT ACCCTGTAAC AAGGAAGCAA TTCTAACCAG 001520
001521 CAAAAGAGGC AGACGTGTTT CTGTGCAACA TCACAGGCGT GTGAAATTGT TCAGATATTG AGATATCAGG AGTGATATAA 001600
001601 ATTGGAAATT TAACCAAAAA TATTTTCCAT CAGTGAACAA AGCCGATTTT AAAGTGCCTC TTGCATTTTT CAGATCTTTC 001680
001681 TCTTTCTTTT TCCCAAAGTC ACATTGTAGT TTCTGATAAA GGAACACACT GGGAAAACTA AGCACATATT TAA
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Predicted Small Protein

Name NONHSAT004413_smProtein_464:748
Length 95
Molecular weight 10835.8357
Aromaticity 0.18085106383
Instability index 44.9735106383
Isoelectric point 9.13275146484
Runs 10
Runs residual 0.0224329324699
Runs probability 0.0296855679209
Amino acid sequence MNLFYVCLKASSSNFFLSHCPKLGFPHPLKNKTKKPFFTPNCPPGVWFWSFSLLLASCYM
FCICSEPLGAKEFGLLLLWESLVSWYKEVMNKAK
Secondary structure LLEEEEEEEELLLLHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHE
EEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT
TTTooooooooooooooooooooooooooooooo