Difference between revisions of "NONHSAT000992"
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sequence = <dnaseq>TTTCCAATTTAATTTATTGTAAAGATTTTTTAATGGAATTGATACACTGTGGCAGTGAAAACAGGATTTTCTGTATAGCCAGCATTGCGAAAACACATCCTGTTGGTGAACACATACATCAATTAAAATGTCACCCAtggctcacacctgtaatctgagcactttgggaggccgaggtgggcagatcacgaggtcaggagatcaaggccatcctgaccaacatggtgaaaccccgtgtctacaaaaaatgcaaaataaattagctgggtgtggtgatgcatgcctgtaatcctagctacttgggaggctaaggcaggagaatcgattgaacccaagaggcagaggttgcagtgagccaagattgcgccactgcactccagccaggcgacagagcaagacactgtctcaaaaaaaaaaaaaaaaaaaaaaGCtacctaatgttaaatgacgagtttaatgggtgcaacacaccaacgtggcgcatgtatacatatgtaagaagcctgcatgttgtgcacatgtaccctaaaacttaaagtataataaATAAATTTTTTAAAAAAGCCACCCAAAGATAGGTAAACATTACTGCATGGGCACTTATATTTCACCTGCAGTTTTGAATTTTGGTCAATAATAATTAGAAAAGTT</dnaseq>| | sequence = <dnaseq>TTTCCAATTTAATTTATTGTAAAGATTTTTTAATGGAATTGATACACTGTGGCAGTGAAAACAGGATTTTCTGTATAGCCAGCATTGCGAAAACACATCCTGTTGGTGAACACATACATCAATTAAAATGTCACCCAtggctcacacctgtaatctgagcactttgggaggccgaggtgggcagatcacgaggtcaggagatcaaggccatcctgaccaacatggtgaaaccccgtgtctacaaaaaatgcaaaataaattagctgggtgtggtgatgcatgcctgtaatcctagctacttgggaggctaaggcaggagaatcgattgaacccaagaggcagaggttgcagtgagccaagattgcgccactgcactccagccaggcgacagagcaagacactgtctcaaaaaaaaaaaaaaaaaaaaaaGCtacctaatgttaaatgacgagtttaatgggtgcaacacaccaacgtggcgcatgtatacatatgtaagaagcctgcatgttgtgcacatgtaccctaaaacttaaagtataataaATAAATTTTTTAAAAAAGCCACCCAAAGATAGGTAAACATTACTGCATGGGCACTTATATTTCACCTGCAGTTTTGAATTTTGGTCAATAATAATTAGAAAAGTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG000418]] | + | [[Category:Intergenic]][[Category:NONHSAG000418]][[Category:Transcripts]] |
Revision as of 10:39, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT000992 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
651 nt |
| Genomic location |
chr1+:14531973..14532868 |
| Exon number |
2 |
| Exons |
14531973..14532571,14532817..14532868 |
| Genome context |
|
| Sequence |
000001 TTTCCAATTT AATTTATTGT AAAGATTTTT TAATGGAATT GATACACTGT GGCAGTGAAA ACAGGATTTT CTGTATAGCC 000080
000081 AGCATTGCGA AAACACATCC TGTTGGTGAA CACATACATC AATTAAAATG TCACCCAtgg ctcacacctg taatctgagc 000160 000161 actttgggag gccgaggtgg gcagatcacg aggtcaggag atcaaggcca tcctgaccaa catggtgaaa ccccgtgtct 000240 000241 acaaaaaatg caaaataaat tagctgggtg tggtgatgca tgcctgtaat cctagctact tgggaggcta aggcaggaga 000320 000321 atcgattgaa cccaagaggc agaggttgca gtgagccaag attgcgccac tgcactccag ccaggcgaca gagcaagaca 000400 000401 ctgtctcaaa aaaaaaaaaa aaaaaaaaaG Ctacctaatg ttaaatgacg agtttaatgg gtgcaacaca ccaacgtggc 000480 000481 gcatgtatac atatgtaaga agcctgcatg ttgtgcacat gtaccctaaa acttaaagta taataaATAA ATTTTTTAAA 000560 000561 AAAGCCACCC AAAGATAGGT AAACATTACT GCATGGGCAC TTATATTTCA CCTGCAGTTT TGAATTTTGG TCAATAATAA 000640 000641 TTAGAAAAGT T |
Predicted Small Protein
| Name | NONHSAT000992_smProtein_32:157 |
| Length | 42 |
| Molecular weight | 4660.4711 |
| Aromaticity | 0.0487804878049 |
| Instability index | 41.6195121951 |
| Isoelectric point | 6.94659423828 |
| Runs | 8 |
| Runs residual | 0.0191530749663 |
| Runs probability | 0.0388623918036 |
| Amino acid sequence | MELIHCGSENRIFCIASIAKTHPVGEHIHQLKCHPWLTPVI |
| Secondary structure | LEEEELLLLLLEEEHHHHHLLLLLLHHHHLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
