Difference between revisions of "NONHSAT087312"
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sequence = <dnaseq>TCAAGTGAATTTGCAAGTATTCCTGCAAATAGCTCCCGGCCTCTGTCAAACATCAGCAAGTCAGGCAGAATGGGACCCGCCATGCTGCGGCCAGCTCTGCCTGCAGGCCCTGTGGGGGCATCCTCCTGGCAGGCCAAGCGGGTCGATGTTTCTGAGCTGGCAGCGGAGCAGCTCACGGCACCCCCCTCAGCATCCCCCACCCAACCCCAGACTCCGGAAGGTGGCGGCCAGTGGCTGAACTCCAGTTGCGCTTGGTCAGAATCTTCTCAATTGAATAAGACTAGAAGTATCAGACGGCGAGATTCCTGTCTAAATTCCAAGACAAAGGTTATGCCTACTCCTACAAATCAATTTAAAATTCCTAAGTTTTCTATTGGTGACTCCCCGGACAGCTCAACACCAAAGCTTTCGCGGGCACAGCGGCCGCAGTCGTGCACGTCAGTTGGCAGGGTCACTGTCCACAGCACCCCGGTTAGACGCTCATCTGGGCCAGCACCACAAAGCCTGCTGAGCGCATGGCGTGTGTCAGCCTTGCCCACACCCGCCAGCCGGCGCTGCTCTGGCCTTCCACCGATGACCCCCAAAACGATGCCCAGGGCCGTGGGCTCTCCCCTGTGTGTGCCAGCTCGGAGACGTTCCTCTGAGCCCCGCAAGAACTCTGCAATGAGAACTGAACCAACAAGGGAGAGCAACAGAAAGACAGATTCCAGGCTGGTGGATGTGTCCCCTGACAGGGGTTCTCCTCCTTCCCGTGTGCCTCAGGCACTTAACTTTTCTCCAGAGGAAAGCGATTCTACTTTCTCCAAAAGTACTGCCACAGAAGTAGCTCGGGAGGAAGCCAAGCCGGGTGGAGATGCAGCCCCTAGTGAGGTGGGCAGAACGGGCGCAGCTGGGTTCTGTTAGCTGAGATTCCTGGAGGCTGCTCGGGAAGCCCGTGGAACCCAGGGCTGTGGCTGGCGGAGTTCCCTGCCATGCTTCATCCTGGGGCCAGTGCCTCCGTGCCAAGCAACCCAAAGGGAGGCAGTCAGGACTTCCAGGCCTCCAGGGGAGAAAGCCCTGCATTTGACTAAGGCAAGGGTCAGGGATCAAAGCTGAGGAAGCGGGAAGCAGG</dnaseq>| | sequence = <dnaseq>TCAAGTGAATTTGCAAGTATTCCTGCAAATAGCTCCCGGCCTCTGTCAAACATCAGCAAGTCAGGCAGAATGGGACCCGCCATGCTGCGGCCAGCTCTGCCTGCAGGCCCTGTGGGGGCATCCTCCTGGCAGGCCAAGCGGGTCGATGTTTCTGAGCTGGCAGCGGAGCAGCTCACGGCACCCCCCTCAGCATCCCCCACCCAACCCCAGACTCCGGAAGGTGGCGGCCAGTGGCTGAACTCCAGTTGCGCTTGGTCAGAATCTTCTCAATTGAATAAGACTAGAAGTATCAGACGGCGAGATTCCTGTCTAAATTCCAAGACAAAGGTTATGCCTACTCCTACAAATCAATTTAAAATTCCTAAGTTTTCTATTGGTGACTCCCCGGACAGCTCAACACCAAAGCTTTCGCGGGCACAGCGGCCGCAGTCGTGCACGTCAGTTGGCAGGGTCACTGTCCACAGCACCCCGGTTAGACGCTCATCTGGGCCAGCACCACAAAGCCTGCTGAGCGCATGGCGTGTGTCAGCCTTGCCCACACCCGCCAGCCGGCGCTGCTCTGGCCTTCCACCGATGACCCCCAAAACGATGCCCAGGGCCGTGGGCTCTCCCCTGTGTGTGCCAGCTCGGAGACGTTCCTCTGAGCCCCGCAAGAACTCTGCAATGAGAACTGAACCAACAAGGGAGAGCAACAGAAAGACAGATTCCAGGCTGGTGGATGTGTCCCCTGACAGGGGTTCTCCTCCTTCCCGTGTGCCTCAGGCACTTAACTTTTCTCCAGAGGAAAGCGATTCTACTTTCTCCAAAAGTACTGCCACAGAAGTAGCTCGGGAGGAAGCCAAGCCGGGTGGAGATGCAGCCCCTAGTGAGGTGGGCAGAACGGGCGCAGCTGGGTTCTGTTAGCTGAGATTCCTGGAGGCTGCTCGGGAAGCCCGTGGAACCCAGGGCTGTGGCTGGCGGAGTTCCCTGCCATGCTTCATCCTGGGGCCAGTGCCTCCGTGCCAAGCAACCCAAAGGGAGGCAGTCAGGACTTCCAGGCCTCCAGGGGAGAAAGCCCTGCATTTGACTAAGGCAAGGGTCAGGGATCAAAGCTGAGGAAGCGGGAAGCAGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG034171]] | + | [[Category:Sense]][[Category:NONHSAG034171]][[Category:Transcripts]] |
Revision as of 10:41, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT087312 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1111 nt |
| Genomic location |
chr22+:46711934..46725027 |
| Exon number |
4 |
| Exons |
46711934..46712309,46719087..46719159,46722333..46722551,46724585..46725027 |
| Genome context |
|
| Sequence |
000001 TCAAGTGAAT TTGCAAGTAT TCCTGCAAAT AGCTCCCGGC CTCTGTCAAA CATCAGCAAG TCAGGCAGAA TGGGACCCGC 000080
000081 CATGCTGCGG CCAGCTCTGC CTGCAGGCCC TGTGGGGGCA TCCTCCTGGC AGGCCAAGCG GGTCGATGTT TCTGAGCTGG 000160 000161 CAGCGGAGCA GCTCACGGCA CCCCCCTCAG CATCCCCCAC CCAACCCCAG ACTCCGGAAG GTGGCGGCCA GTGGCTGAAC 000240 000241 TCCAGTTGCG CTTGGTCAGA ATCTTCTCAA TTGAATAAGA CTAGAAGTAT CAGACGGCGA GATTCCTGTC TAAATTCCAA 000320 000321 GACAAAGGTT ATGCCTACTC CTACAAATCA ATTTAAAATT CCTAAGTTTT CTATTGGTGA CTCCCCGGAC AGCTCAACAC 000400 000401 CAAAGCTTTC GCGGGCACAG CGGCCGCAGT CGTGCACGTC AGTTGGCAGG GTCACTGTCC ACAGCACCCC GGTTAGACGC 000480 000481 TCATCTGGGC CAGCACCACA AAGCCTGCTG AGCGCATGGC GTGTGTCAGC CTTGCCCACA CCCGCCAGCC GGCGCTGCTC 000560 000561 TGGCCTTCCA CCGATGACCC CCAAAACGAT GCCCAGGGCC GTGGGCTCTC CCCTGTGTGT GCCAGCTCGG AGACGTTCCT 000640 000641 CTGAGCCCCG CAAGAACTCT GCAATGAGAA CTGAACCAAC AAGGGAGAGC AACAGAAAGA CAGATTCCAG GCTGGTGGAT 000720 000721 GTGTCCCCTG ACAGGGGTTC TCCTCCTTCC CGTGTGCCTC AGGCACTTAA CTTTTCTCCA GAGGAAAGCG ATTCTACTTT 000800 000801 CTCCAAAAGT ACTGCCACAG AAGTAGCTCG GGAGGAAGCC AAGCCGGGTG GAGATGCAGC CCCTAGTGAG GTGGGCAGAA 000880 000881 CGGGCGCAGC TGGGTTCTGT TAGCTGAGAT TCCTGGAGGC TGCTCGGGAA GCCCGTGGAA CCCAGGGCTG TGGCTGGCGG 000960 000961 AGTTCCCTGC CATGCTTCAT CCTGGGGCCA GTGCCTCCGT GCCAAGCAAC CCAAAGGGAG GCAGTCAGGA CTTCCAGGCC 001040 001041 TCCAGGGGAG AAAGCCCTGC ATTTGACTAA GGCAAGGGTC AGGGATCAAA GCTGAGGAAG CGGGAAGCAG G |
Predicted Small Protein
| Name | NONHSAT087312_smProtein_515:643 |
| Length | 43 |
| Molecular weight | 4471.959 |
| Aromaticity | 0.047619047619 |
| Instability index | 71.2523809524 |
| Isoelectric point | 4.65704345703 |
| Runs | 9 |
| Runs residual | 0.038125376733 |
| Runs probability | 0.0240534652299 |
| Amino acid sequence | MACVSLAHTRQPALLWPSTDDPQNDAQGRGLSPVCASSETFL |
| Secondary structure | LEEEELLLLLLLLLLLLLLLLHHHLLLLLLLLLEELLLLEEL |
| PRMN | - |
| PiMo | - |
