Difference between revisions of "NONHSAT065816"
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sequence = <dnaseq>GCGGGGGCCACATGGGGCCAGTTTATTGCAGTTAAATACCTCTCTCTCTATTTTTTTTTTGTCAATTTTTCCATAAAGAAAATTAAAACACACACACACACCCCCAAAGGGGAGCAGGGACCCAGAAACAAGAGGTGGGGTGGGACGTGGCCTCCCTGCATAGGTCCAGGCCCCGGGTGGCCCCCCAAAGGCTCCCCTCCTTCCCATCAGCACCCTGTCTCAGTACCTCCAGAGAGCAGGAGGCAGCGGGACGTGGCAGGGCCTCTGTCCCCTCCCTCTTGCCTCCAGGTGAGACCACTAGAAGTGCCGGGGCTTAGTGAGGGCCGGGAGAAGGGCGACAGACAGACGGATGGGCAGGGAGGATACCGTTTCCAAGTGGAGGAGGGCGGTGGGCACTGTATCCACAGAAATGCATTATTTCTCCCCGTTTTTTGTTAAAAATCTACTATAAAAAAACGCAGCTGGGGGAGGGGCATGTGTCCCTCTCTGTGCTAAGGGCTGGGGAAGGGGGCAGCAGAGGCCGGCGTGGGCGGCGGCGGCTGCGTGGTGGTGGCGGGCGTCACTGCCGGGTGCCCTCGCCCACCATCTCCAGGTTGTGCTGCTGCAGCTGGGCTCGAAGCAGGGCGTTCTCATTCTTCAGCTCCTCGATCTGCTGCCTCAGGAGCTCGTTGTCCATCTGCAGCCGCTCGGCCTCTTTGAAGGTCTCCTGCATGCGCTGGTTGGTCTGGCGCAACTCCCGGATGTAATCGCAGGCCTTGGACAGGATCCCTCCTTTACTCGCTCCCGTCTTGCTGTTGTCTGCGTTACAGTCTGGAATGATTTTCGAAAGCTGGACGATCCAGTTGTTGATCTTGTCCCTCCGCCTCCGCTCCACTTCGTTGTGCTGGGCTCTTCTCCTCTCATCTCGGGGTGTTCTGGTTCCATCAATTTTTGGAGAGTAAGGGTGTGTCCGGGGGGCGATCGTCCTCTGTGTTCCTGTCTGAAGCACATCCTGGGGCGTCATCATGACGTAGAACTGGCCTCCAGCCTGCAAGCTCTGGTCTGTGGTCTGTACGGACACAGCCGTAGTATCTCCCACACTGGACGCTGGGAAATAGGCAAATCGTGCCTCCCCGCTGACAGCCTCGGCCGCCGGACTGCCACCATTGCTGAAGGGATTTTGGATCACAGCCTGTCCTCCATTTGTCTCTGTGCGGAACTGGTACTGGATGTTGTGGTCGCCGAACGCCGCCTGCTGGACGCTGGTGATGGCCACCGCTGTCTGCTCCTCCGCTCCTGGGCCGTCCCCGCCTTCCTGCAGCTCGACGCCCTCCTCCGCCTCGGGTCCCTTGTCGTGGCTGGCGGCGGCAGCAGCGGTGGCCGAGGCAGCGGGATCCAGACCCGGGTCCAGCATGTCCATGGGGGGGGCGGGGGCGGGGGGGGCGCGGGGCCCGGGGGGGAGGGGAGGGGAGGGGAGGGAGGGAAGGGAGGGGGCGGGCGGCCGGGGGGGCCCCGAGCCCGGCGCTCACGCCGCGCGGCAGGAG</dnaseq>| | sequence = <dnaseq>GCGGGGGCCACATGGGGCCAGTTTATTGCAGTTAAATACCTCTCTCTCTATTTTTTTTTTGTCAATTTTTCCATAAAGAAAATTAAAACACACACACACACCCCCAAAGGGGAGCAGGGACCCAGAAACAAGAGGTGGGGTGGGACGTGGCCTCCCTGCATAGGTCCAGGCCCCGGGTGGCCCCCCAAAGGCTCCCCTCCTTCCCATCAGCACCCTGTCTCAGTACCTCCAGAGAGCAGGAGGCAGCGGGACGTGGCAGGGCCTCTGTCCCCTCCCTCTTGCCTCCAGGTGAGACCACTAGAAGTGCCGGGGCTTAGTGAGGGCCGGGAGAAGGGCGACAGACAGACGGATGGGCAGGGAGGATACCGTTTCCAAGTGGAGGAGGGCGGTGGGCACTGTATCCACAGAAATGCATTATTTCTCCCCGTTTTTTGTTAAAAATCTACTATAAAAAAACGCAGCTGGGGGAGGGGCATGTGTCCCTCTCTGTGCTAAGGGCTGGGGAAGGGGGCAGCAGAGGCCGGCGTGGGCGGCGGCGGCTGCGTGGTGGTGGCGGGCGTCACTGCCGGGTGCCCTCGCCCACCATCTCCAGGTTGTGCTGCTGCAGCTGGGCTCGAAGCAGGGCGTTCTCATTCTTCAGCTCCTCGATCTGCTGCCTCAGGAGCTCGTTGTCCATCTGCAGCCGCTCGGCCTCTTTGAAGGTCTCCTGCATGCGCTGGTTGGTCTGGCGCAACTCCCGGATGTAATCGCAGGCCTTGGACAGGATCCCTCCTTTACTCGCTCCCGTCTTGCTGTTGTCTGCGTTACAGTCTGGAATGATTTTCGAAAGCTGGACGATCCAGTTGTTGATCTTGTCCCTCCGCCTCCGCTCCACTTCGTTGTGCTGGGCTCTTCTCCTCTCATCTCGGGGTGTTCTGGTTCCATCAATTTTTGGAGAGTAAGGGTGTGTCCGGGGGGCGATCGTCCTCTGTGTTCCTGTCTGAAGCACATCCTGGGGCGTCATCATGACGTAGAACTGGCCTCCAGCCTGCAAGCTCTGGTCTGTGGTCTGTACGGACACAGCCGTAGTATCTCCCACACTGGACGCTGGGAAATAGGCAAATCGTGCCTCCCCGCTGACAGCCTCGGCCGCCGGACTGCCACCATTGCTGAAGGGATTTTGGATCACAGCCTGTCCTCCATTTGTCTCTGTGCGGAACTGGTACTGGATGTTGTGGTCGCCGAACGCCGCCTGCTGGACGCTGGTGATGGCCACCGCTGTCTGCTCCTCCGCTCCTGGGCCGTCCCCGCCTTCCTGCAGCTCGACGCCCTCCTCCGCCTCGGGTCCCTTGTCGTGGCTGGCGGCGGCAGCAGCGGTGGCCGAGGCAGCGGGATCCAGACCCGGGTCCAGCATGTCCATGGGGGGGGCGGGGGCGGGGGGGGCGCGGGGCCCGGGGGGGAGGGGAGGGGAGGGGAGGGAGGGAAGGGAGGGGGCGGGCGGCCGGGGGGGCCCCGAGCCCGGCGCTCACGCCGCGCGGCAGGAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG025566]] | + | [[Category:Antisense]][[Category:NONHSAG025566]][[Category:Transcripts]] |
Revision as of 10:46, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT065816 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1523 nt |
Genomic location |
chr19-:35759881..35770718 |
Exon number |
9 |
Exons |
35759881..35760066,35760349..35760395,35760484..35760602,35761350..35761500,35761621..35761708,35761986..35762044,35769601..35769695,35769849..35769977,35770070..35770718 |
Genome context |
|
Sequence |
000001 GCGGGGGCCA CATGGGGCCA GTTTATTGCA GTTAAATACC TCTCTCTCTA TTTTTTTTTT GTCAATTTTT CCATAAAGAA 000080
000081 AATTAAAACA CACACACACA CCCCCAAAGG GGAGCAGGGA CCCAGAAACA AGAGGTGGGG TGGGACGTGG CCTCCCTGCA 000160 000161 TAGGTCCAGG CCCCGGGTGG CCCCCCAAAG GCTCCCCTCC TTCCCATCAG CACCCTGTCT CAGTACCTCC AGAGAGCAGG 000240 000241 AGGCAGCGGG ACGTGGCAGG GCCTCTGTCC CCTCCCTCTT GCCTCCAGGT GAGACCACTA GAAGTGCCGG GGCTTAGTGA 000320 000321 GGGCCGGGAG AAGGGCGACA GACAGACGGA TGGGCAGGGA GGATACCGTT TCCAAGTGGA GGAGGGCGGT GGGCACTGTA 000400 000401 TCCACAGAAA TGCATTATTT CTCCCCGTTT TTTGTTAAAA ATCTACTATA AAAAAACGCA GCTGGGGGAG GGGCATGTGT 000480 000481 CCCTCTCTGT GCTAAGGGCT GGGGAAGGGG GCAGCAGAGG CCGGCGTGGG CGGCGGCGGC TGCGTGGTGG TGGCGGGCGT 000560 000561 CACTGCCGGG TGCCCTCGCC CACCATCTCC AGGTTGTGCT GCTGCAGCTG GGCTCGAAGC AGGGCGTTCT CATTCTTCAG 000640 000641 CTCCTCGATC TGCTGCCTCA GGAGCTCGTT GTCCATCTGC AGCCGCTCGG CCTCTTTGAA GGTCTCCTGC ATGCGCTGGT 000720 000721 TGGTCTGGCG CAACTCCCGG ATGTAATCGC AGGCCTTGGA CAGGATCCCT CCTTTACTCG CTCCCGTCTT GCTGTTGTCT 000800 000801 GCGTTACAGT CTGGAATGAT TTTCGAAAGC TGGACGATCC AGTTGTTGAT CTTGTCCCTC CGCCTCCGCT CCACTTCGTT 000880 000881 GTGCTGGGCT CTTCTCCTCT CATCTCGGGG TGTTCTGGTT CCATCAATTT TTGGAGAGTA AGGGTGTGTC CGGGGGGCGA 000960 000961 TCGTCCTCTG TGTTCCTGTC TGAAGCACAT CCTGGGGCGT CATCATGACG TAGAACTGGC CTCCAGCCTG CAAGCTCTGG 001040 001041 TCTGTGGTCT GTACGGACAC AGCCGTAGTA TCTCCCACAC TGGACGCTGG GAAATAGGCA AATCGTGCCT CCCCGCTGAC 001120 001121 AGCCTCGGCC GCCGGACTGC CACCATTGCT GAAGGGATTT TGGATCACAG CCTGTCCTCC ATTTGTCTCT GTGCGGAACT 001200 001201 GGTACTGGAT GTTGTGGTCG CCGAACGCCG CCTGCTGGAC GCTGGTGATG GCCACCGCTG TCTGCTCCTC CGCTCCTGGG 001280 001281 CCGTCCCCGC CTTCCTGCAG CTCGACGCCC TCCTCCGCCT CGGGTCCCTT GTCGTGGCTG GCGGCGGCAG CAGCGGTGGC 001360 001361 CGAGGCAGCG GGATCCAGAC CCGGGTCCAG CATGTCCATG GGGGGGGCGG GGGCGGGGGG GGCGCGGGGC CCGGGGGGGA 001440 001441 GGGGAGGGGA GGGGAGGGAG GGAAGGGAGG GGGCGGGCGG CCGGGGGGGC CCCGAGCCCG GCGCTCACGC CGCGCGGCAG 001520 001521 GAG |
Predicted Small Protein
Name | NONHSAT065816_smProtein_815:940 |
Length | 42 |
Molecular weight | 4650.5489 |
Aromaticity | 0.0975609756098 |
Instability index | 52.587804878 |
Isoelectric point | 8.00213623047 |
Runs | 7 |
Runs residual | 0.00523716893611 |
Runs probability | 0.0295379413026 |
Amino acid sequence | MIFESWTIQLLILSLRLRSTSLCWALLLSSRGVLVPSIFGE |
Secondary structure | LLLHHHHHHHHHHHHHLLLHHHHHHHHHHLLLLEELLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii |