Difference between revisions of "NONHSAT055974"

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sequence = <dnaseq>tcttcccccaccagaggggtgcatttgttacaattgatggccctttatagacacaccatcatctcccaaagtccatagtttacatcagggttcacgcttgatgttgtacattctatgggtttggacaaatgtttcatgatgtgtatttaccattatataccatatggagtattttcattgccccaGTCAATTTCATTCTTTATAAAAGACTTGTCTTCAGAGAACAGATTGTGCTGCAGATTCATTGAAGTAGCATGTGGAGGGGGAAGAGCTCTTTAAGTCTGAGTTGAATCTAGTGATTCTCAAGAAAACAGACCAGACCCTTGAAGATTTTCCTGTCTTTCTCTCTTAGGGGACCAGTCAGCCATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGGGTCTCTTGGCTGAAAAATTGGAGGCTTTGATCACTCAGACTCGAGCCAAACAGGCAGCTACCATGAGTGAAGTGGAGTGGAGAGGGAGAACGGTTCCAGTGAAGATTGACAAAGTGCGCATTTTCTTATTAGGACTGGCTGATAACGAAGCAGCTATTGTCCAGGTGAGG</dnaseq>|
 
sequence = <dnaseq>tcttcccccaccagaggggtgcatttgttacaattgatggccctttatagacacaccatcatctcccaaagtccatagtttacatcagggttcacgcttgatgttgtacattctatgggtttggacaaatgtttcatgatgtgtatttaccattatataccatatggagtattttcattgccccaGTCAATTTCATTCTTTATAAAAGACTTGTCTTCAGAGAACAGATTGTGCTGCAGATTCATTGAAGTAGCATGTGGAGGGGGAAGAGCTCTTTAAGTCTGAGTTGAATCTAGTGATTCTCAAGAAAACAGACCAGACCCTTGAAGATTTTCCTGTCTTTCTCTCTTAGGGGACCAGTCAGCCATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGGGTCTCTTGGCTGAAAAATTGGAGGCTTTGATCACTCAGACTCGAGCCAAACAGGCAGCTACCATGAGTGAAGTGGAGTGGAGAGGGAGAACGGTTCCAGTGAAGATTGACAAAGTGCGCATTTTCTTATTAGGACTGGCTGATAACGAAGCAGCTATTGTCCAGGTGAGG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG022799]]
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[[Category:Sense]][[Category:NONHSAG022799]][[Category:Transcripts]]

Revision as of 10:46, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT055974

Source

NONCODE4.0

Same with

,

Classification

sense

Length

582 nt

Genomic location

chr17-:74053478..74056823

Exon number

2

Exons

74053478..74053624,74056389..74056823

Genome context

Sequence
000001 tcttccccca ccagaggggt gcatttgtta caattgatgg ccctttatag acacaccatc atctcccaaa gtccatagtt 000080
000081 tacatcaggg ttcacgcttg atgttgtaca ttctatgggt ttggacaaat gtttcatgat gtgtatttac cattatatac 000160
000161 catatggagt attttcattg ccccaGTCAA TTTCATTCTT TATAAAAGAC TTGTCTTCAG AGAACAGATT GTGCTGCAGA 000240
000241 TTCATTGAAG TAGCATGTGG AGGGGGAAGA GCTCTTTAAG TCTGAGTTGA ATCTAGTGAT TCTCAAGAAA ACAGACCAGA 000320
000321 CCCTTGAAGA TTTTCCTGTC TTTCTCTCTT AGGGGACCAG TCAGCCATCA ATGAACTCAT GCAGATGAGA TTGAGGTCTG 000400
000401 GGGGCACTGA GGGTCTCTTG GCTGAAAAAT TGGAGGCTTT GATCACTCAG ACTCGAGCCA AACAGGCAGC TACCATGAGT 000480
000481 GAAGTGGAGT GGAGAGGGAG AACGGTTCCA GTGAAGATTG ACAAAGTGCG CATTTTCTTA TTAGGACTGG CTGATAACGA 000560
000561 AGCAGCTATT GTCCAGGTGA GG
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Predicted Small Protein

Name NONHSAT055974_smProtein_128:247
Length 40
Molecular weight 4837.7678
Aromaticity 0.205128205128
Instability index 44.1769230769
Isoelectric point 8.22967529297
Runs 8
Runs residual 0.0363876319759
Runs probability 0.0277336159689
Amino acid sequence MFHDVYLPLYTIWSIFIAPVNFILYKRLVFREQIVLQIH
Secondary structure LLLLEELLHHHHHHHEELLLLHHHHHHHHHHHHHHHHLL
PRMN LLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL
PiMo ooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiii