Difference between revisions of "ENST00000458468.1"
Line 42: | Line 42: | ||
sequence = <dnaseq>ATAAAGGACTTGTCTAGGGGAGAGCCTATGGATCTGAGAACGCTGTCTGGGCTTGGTACCAAGAGCTGGTATTTCACAGCAGCGACCGCCTCACAGACGAGCTGTGGGAAGCAGGAGGGAGACTCTCTCTTAGGGTGCCACTACTATGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACGACAACAAGAGAGACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCAGGCACCAGAAGAGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTGCAGCTCAGCCAATCAGTGACATCATTGCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAGATCTTCAGGAATTTTACTGGGATAATTATCCAAATAAATTGCAAGCATTCTATCCAAATGGACATCCATAAAAATTCATCAGAGAGCATTTTACTACTGAGCTGCAAAGGGAAAAACTTAAAATGGATATGAAAAGTGAAGAAAGTGATCATAGGAGAAAACCATTTCAGGTGTCTGATGATTTGTGAGCCTCAAGTGACTACTCTGTGGAATCATCTGTCCTTGCCTTTGAATTAGCTTTCCCTAGGCCATGAGTCAACATTAGTAGTTTATACATCCAAATTGATGACAAGAGCACCTCAAAGGCAGCAGCCTCAAGGAGCAGCCATGGCCCCAGACTTGTCGCACGGATGCAGAAAACTTAATGGAGGAGGCTGAGGTCAGAATGGGAAGAGTTTTTAAAAAATAAAAAGGGGAGCTAATATGTGAGGAACTGATTGCTGTGCATTATTTTCCACTGAACAGACCTTCTTTTAACTTCTAATCTCAAGCACATAGCAGCTGTTGTTTTCATATTAAAGATCAGTAAGTGTTTGTTGAATGAATGTATAAATTCTTCCCCAATCTCTGTTCCATGTAATAAGAACTAAGTTAGCATTCAATTATAAAGAGGACTTAGAAAGTCTGCAGACATTTTTGATCAAAAATCCTTTTAACTGTCTTCTTATGGTTCCCGGTAACACCTAAGCCCAAAAAACTCAGGTCATTTCTTGCCTGTACTGTTGCAATAGCCTCATAATAACTAGTCTTCTCCTTTATCAACCACAGTCGTCTCCGCTACACAAAGAAGAGAGGGTGCTAATCTAAAGTGTAAATTATTTTAAATCAGCACCCTTCTTGTAATTTCCCAGTGGTTTTTCCTGTCATAAGAATAACATGCAAAATTCCTTGCTTGCAAAGCCAGGTATGACCTTGCCCCGTCTACCTTACTGGCATCGTCTCTCATGACTCTTCCCCTTTTTCACTCTCCATCTTGCCTTTTCCCAACCATGCCTGCTAGTGAGCCTTAGCCCTTGTGTTTTCTCTGCCAGGGATGCATGACTGGCTTCTTTACTTTATTCTGATCTCTCTGCTCAAATGTCATCTTTTTAGAGATAGCTTTCCTAAACATCTTTAAAAGTACCCCATGAACTGTGAAACACCTTTCCTGCTTTTTCTTCATAGTACTTATCACTTCCTGATATTATGTTAGACAACAAGCAAATAAGTATATGCTGTTCCCACTAAAATATAAGCTCCATTTGAACAGGAGCCTTGATTATTCCTGAGTATACCCCTAGTGCCCAGAACCTAGTAGGGCTTTAATAAATATTAGATTCATTTGTTGAATGAAAAAATGAATGAATAATTGAATAAAGATATCCAGGTAGAGTGTCCGGGCAGCCCAACCTATGTGAAGCCAGTACAAGAATGTTTCTGTGACATAGTGAGCGCAATTATTCCTCTAAATGATGAACTTGCATGAGTACACAAGGATAAAATTAAGCACGTAGTTTAGATTTCTGCAAGTCTCTTCCTCAGATTGAGGAAAAACAAAGAAATTGAGCTTATTCTCACCTCATTCTTACATGAACTAAATCCAGAATAAAGCATCATTTAAATACCAAGCACATCCCTACCTCAGCCACTCATGGAATACTTTATCTGTAAAGGGACAGATAGATAGTAAATATTTTTGGCTTTGGGGACCGTACAGTCTGTGTCGCCACTACTCAGCACTTCTGTTGAGGTGTGGAATCAGCCCTAGACAACACATAAACAAATGGGTGTGGCTGTGTTCCAATAAAATGTTATTTATAAAACTAGGAAATCAGCAGATTTAGTCCACAGGCTGTAGTTTGCTGACCCTTGAATTAGAGAGTCTTCCCCAAATCCTCTTCCCAAGTTATTGAAAGAATGCCCATAGGACCATAGCTCCCTCACCTGGTTCTTTCAAGAAATGAGACAAATTCAGGGATGGTTGGAGGGTGGAACGCCTACCTGTGACATGACTATTGAGCCTGATTTCTTTCCTTTTATCTCTTTAAAGTGAGTCAGGTCTTAACTTTAAACTGTCTCTAAAGTGGCAATAACTGGGCCATGTCAAATACTCCCAATGACAAAATTTCTTCTTGGAGAATGAATGAGGGTTGCATACAGTGGTGTGTTGGTAAATGTTTAGCAACTGGCTCTCTTACTGATTTCTGTAGTGTAAATTCTCCCATCCTGGCCATCTGAAACTACCAATATGATGTCACTTGATGTAGAGTTGGGAAAAGACAGTCTCTTGAATAAGTATGAGCTGGTTCCAGCCCACTGCTGAACACATATTTAAAAGCTACAATAGCTCTGCTCACTGCCATTGCAGAGTCTGGAGGAAAGAGTAGCAGGCTTGATAGGAGCAATTGGCTGAATAATCTTTTGCAATGCCAATAAATAATGAAAAAGTATATAAATATAACGCTGTATAGAAAGCTCTCAAGTTCAGTGTTTGGTTAAAATACATACTCAGTAAATGGTAGCTATTATTGTCTTAGTTTAAGTTATTGCAAGCATTAAAATTAAATGTTTAGCTACAGACTCAATCCAGTTTTAATGTCATTGTGTTAATAAGGCCTCTTAACATTGAAGCAACAAAGATAAAGGAATTTTTTTGTAGCTATTCACGATTCTGCCCAGCTCAAGGTAAAGATAGCAACAAAATACTCCAACCAGAATAAAAGAAGTCTCCACTTGACTGCAGCTCTTCGCAACACTTCACAAGGGTCAAGCTGTGTTAGTTTCCTTCAGTGTTAAACAGAATGCATCTTAAGAGAATAGTTCAATTATTGATTGAATAGTAGGTTCAAGTTGACTATAATCCCAACTAATACACTCTAAGACCAGGGATGGGCCGACAGAAGGGTAAAGTTTTCCACTCAAGTCTCGAGGCAAACACTCAGATAGAAGTAGTAATATGGATGCCTTCTATTATTTGGTCAATACAATACTGTTCCAGCCCAGTTGTGCAAAACTGGTGAAATAAAAGGCAAAAATATTGACAACAGTTTGGGTAACTGGATTCCAAAATGGGCATCCATCTAAGAG</dnaseq>| | sequence = <dnaseq>ATAAAGGACTTGTCTAGGGGAGAGCCTATGGATCTGAGAACGCTGTCTGGGCTTGGTACCAAGAGCTGGTATTTCACAGCAGCGACCGCCTCACAGACGAGCTGTGGGAAGCAGGAGGGAGACTCTCTCTTAGGGTGCCACTACTATGGAGACACAGCTGGGCTGAACAAGATTTGCTTCAAACGACAACAAGAGAGACAGAAAGTATCTGGTTCAACCGCTGCCCGAGCAGGCAGGCACCAGAAGAGCTAGCAGCCAATCCGGCCATGCTCGAAGCCAGCTCTGCAGCTCAGCCAATCAGTGACATCATTGCTTTCTTTAGCTTGCCCATGGTGATGTGAAGATGAGAAGAAATAGCAAGGCCCAACCAGTTCTTCATCTGGAGACAGTTCAACGTTCTGCAAACCAGATCTTCAGGAATTTTACTGGGATAATTATCCAAATAAATTGCAAGCATTCTATCCAAATGGACATCCATAAAAATTCATCAGAGAGCATTTTACTACTGAGCTGCAAAGGGAAAAACTTAAAATGGATATGAAAAGTGAAGAAAGTGATCATAGGAGAAAACCATTTCAGGTGTCTGATGATTTGTGAGCCTCAAGTGACTACTCTGTGGAATCATCTGTCCTTGCCTTTGAATTAGCTTTCCCTAGGCCATGAGTCAACATTAGTAGTTTATACATCCAAATTGATGACAAGAGCACCTCAAAGGCAGCAGCCTCAAGGAGCAGCCATGGCCCCAGACTTGTCGCACGGATGCAGAAAACTTAATGGAGGAGGCTGAGGTCAGAATGGGAAGAGTTTTTAAAAAATAAAAAGGGGAGCTAATATGTGAGGAACTGATTGCTGTGCATTATTTTCCACTGAACAGACCTTCTTTTAACTTCTAATCTCAAGCACATAGCAGCTGTTGTTTTCATATTAAAGATCAGTAAGTGTTTGTTGAATGAATGTATAAATTCTTCCCCAATCTCTGTTCCATGTAATAAGAACTAAGTTAGCATTCAATTATAAAGAGGACTTAGAAAGTCTGCAGACATTTTTGATCAAAAATCCTTTTAACTGTCTTCTTATGGTTCCCGGTAACACCTAAGCCCAAAAAACTCAGGTCATTTCTTGCCTGTACTGTTGCAATAGCCTCATAATAACTAGTCTTCTCCTTTATCAACCACAGTCGTCTCCGCTACACAAAGAAGAGAGGGTGCTAATCTAAAGTGTAAATTATTTTAAATCAGCACCCTTCTTGTAATTTCCCAGTGGTTTTTCCTGTCATAAGAATAACATGCAAAATTCCTTGCTTGCAAAGCCAGGTATGACCTTGCCCCGTCTACCTTACTGGCATCGTCTCTCATGACTCTTCCCCTTTTTCACTCTCCATCTTGCCTTTTCCCAACCATGCCTGCTAGTGAGCCTTAGCCCTTGTGTTTTCTCTGCCAGGGATGCATGACTGGCTTCTTTACTTTATTCTGATCTCTCTGCTCAAATGTCATCTTTTTAGAGATAGCTTTCCTAAACATCTTTAAAAGTACCCCATGAACTGTGAAACACCTTTCCTGCTTTTTCTTCATAGTACTTATCACTTCCTGATATTATGTTAGACAACAAGCAAATAAGTATATGCTGTTCCCACTAAAATATAAGCTCCATTTGAACAGGAGCCTTGATTATTCCTGAGTATACCCCTAGTGCCCAGAACCTAGTAGGGCTTTAATAAATATTAGATTCATTTGTTGAATGAAAAAATGAATGAATAATTGAATAAAGATATCCAGGTAGAGTGTCCGGGCAGCCCAACCTATGTGAAGCCAGTACAAGAATGTTTCTGTGACATAGTGAGCGCAATTATTCCTCTAAATGATGAACTTGCATGAGTACACAAGGATAAAATTAAGCACGTAGTTTAGATTTCTGCAAGTCTCTTCCTCAGATTGAGGAAAAACAAAGAAATTGAGCTTATTCTCACCTCATTCTTACATGAACTAAATCCAGAATAAAGCATCATTTAAATACCAAGCACATCCCTACCTCAGCCACTCATGGAATACTTTATCTGTAAAGGGACAGATAGATAGTAAATATTTTTGGCTTTGGGGACCGTACAGTCTGTGTCGCCACTACTCAGCACTTCTGTTGAGGTGTGGAATCAGCCCTAGACAACACATAAACAAATGGGTGTGGCTGTGTTCCAATAAAATGTTATTTATAAAACTAGGAAATCAGCAGATTTAGTCCACAGGCTGTAGTTTGCTGACCCTTGAATTAGAGAGTCTTCCCCAAATCCTCTTCCCAAGTTATTGAAAGAATGCCCATAGGACCATAGCTCCCTCACCTGGTTCTTTCAAGAAATGAGACAAATTCAGGGATGGTTGGAGGGTGGAACGCCTACCTGTGACATGACTATTGAGCCTGATTTCTTTCCTTTTATCTCTTTAAAGTGAGTCAGGTCTTAACTTTAAACTGTCTCTAAAGTGGCAATAACTGGGCCATGTCAAATACTCCCAATGACAAAATTTCTTCTTGGAGAATGAATGAGGGTTGCATACAGTGGTGTGTTGGTAAATGTTTAGCAACTGGCTCTCTTACTGATTTCTGTAGTGTAAATTCTCCCATCCTGGCCATCTGAAACTACCAATATGATGTCACTTGATGTAGAGTTGGGAAAAGACAGTCTCTTGAATAAGTATGAGCTGGTTCCAGCCCACTGCTGAACACATATTTAAAAGCTACAATAGCTCTGCTCACTGCCATTGCAGAGTCTGGAGGAAAGAGTAGCAGGCTTGATAGGAGCAATTGGCTGAATAATCTTTTGCAATGCCAATAAATAATGAAAAAGTATATAAATATAACGCTGTATAGAAAGCTCTCAAGTTCAGTGTTTGGTTAAAATACATACTCAGTAAATGGTAGCTATTATTGTCTTAGTTTAAGTTATTGCAAGCATTAAAATTAAATGTTTAGCTACAGACTCAATCCAGTTTTAATGTCATTGTGTTAATAAGGCCTCTTAACATTGAAGCAACAAAGATAAAGGAATTTTTTTGTAGCTATTCACGATTCTGCCCAGCTCAAGGTAAAGATAGCAACAAAATACTCCAACCAGAATAAAAGAAGTCTCCACTTGACTGCAGCTCTTCGCAACACTTCACAAGGGTCAAGCTGTGTTAGTTTCCTTCAGTGTTAAACAGAATGCATCTTAAGAGAATAGTTCAATTATTGATTGAATAGTAGGTTCAAGTTGACTATAATCCCAACTAATACACTCTAAGACCAGGGATGGGCCGACAGAAGGGTAAAGTTTTCCACTCAAGTCTCGAGGCAAACACTCAGATAGAAGTAGTAATATGGATGCCTTCTATTATTTGGTCAATACAATACTGTTCCAGCCCAGTTGTGCAAAACTGGTGAAATAAAAGGCAAAAATATTGACAACAGTTTGGGTAACTGGATTCCAAAATGGGCATCCATCTAAGAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-USP25-2]][[Category:NONHSAG032423]][[Category:ENSG00000215386.6]] | + | [[Category:Intergenic]][[Category:lnc-USP25-2]][[Category:NONHSAG032423]][[Category:ENSG00000215386.6]][[Category:Transcripts]] |
Revision as of 10:51, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000458468.1 |
Source |
Gencode19 |
Same with |
lnc-USP25-2:1,NONHSAT081220 |
Classification |
intergenic |
Length |
3475 nt |
Genomic location |
chr21+:17442842..17982094 |
Exon number |
8 |
Exons |
17442842..17442868,17443434..17443718,17553911..17554007,17603376..17603435,17859810..17859858,17909699..17909759,17966660..17966774,17979314..17982094 |
Genome context |
|
Sequence |
000001 ATAAAGGACT TGTCTAGGGG AGAGCCTATG GATCTGAGAA CGCTGTCTGG GCTTGGTACC AAGAGCTGGT ATTTCACAGC 000080
000081 AGCGACCGCC TCACAGACGA GCTGTGGGAA GCAGGAGGGA GACTCTCTCT TAGGGTGCCA CTACTATGGA GACACAGCTG 000160 000161 GGCTGAACAA GATTTGCTTC AAACGACAAC AAGAGAGACA GAAAGTATCT GGTTCAACCG CTGCCCGAGC AGGCAGGCAC 000240 000241 CAGAAGAGCT AGCAGCCAAT CCGGCCATGC TCGAAGCCAG CTCTGCAGCT CAGCCAATCA GTGACATCAT TGCTTTCTTT 000320 000321 AGCTTGCCCA TGGTGATGTG AAGATGAGAA GAAATAGCAA GGCCCAACCA GTTCTTCATC TGGAGACAGT TCAACGTTCT 000400 000401 GCAAACCAGA TCTTCAGGAA TTTTACTGGG ATAATTATCC AAATAAATTG CAAGCATTCT ATCCAAATGG ACATCCATAA 000480 000481 AAATTCATCA GAGAGCATTT TACTACTGAG CTGCAAAGGG AAAAACTTAA AATGGATATG AAAAGTGAAG AAAGTGATCA 000560 000561 TAGGAGAAAA CCATTTCAGG TGTCTGATGA TTTGTGAGCC TCAAGTGACT ACTCTGTGGA ATCATCTGTC CTTGCCTTTG 000640 000641 AATTAGCTTT CCCTAGGCCA TGAGTCAACA TTAGTAGTTT ATACATCCAA ATTGATGACA AGAGCACCTC AAAGGCAGCA 000720 000721 GCCTCAAGGA GCAGCCATGG CCCCAGACTT GTCGCACGGA TGCAGAAAAC TTAATGGAGG AGGCTGAGGT CAGAATGGGA 000800 000801 AGAGTTTTTA AAAAATAAAA AGGGGAGCTA ATATGTGAGG AACTGATTGC TGTGCATTAT TTTCCACTGA ACAGACCTTC 000880 000881 TTTTAACTTC TAATCTCAAG CACATAGCAG CTGTTGTTTT CATATTAAAG ATCAGTAAGT GTTTGTTGAA TGAATGTATA 000960 000961 AATTCTTCCC CAATCTCTGT TCCATGTAAT AAGAACTAAG TTAGCATTCA ATTATAAAGA GGACTTAGAA AGTCTGCAGA 001040 001041 CATTTTTGAT CAAAAATCCT TTTAACTGTC TTCTTATGGT TCCCGGTAAC ACCTAAGCCC AAAAAACTCA GGTCATTTCT 001120 001121 TGCCTGTACT GTTGCAATAG CCTCATAATA ACTAGTCTTC TCCTTTATCA ACCACAGTCG TCTCCGCTAC ACAAAGAAGA 001200 001201 GAGGGTGCTA ATCTAAAGTG TAAATTATTT TAAATCAGCA CCCTTCTTGT AATTTCCCAG TGGTTTTTCC TGTCATAAGA 001280 001281 ATAACATGCA AAATTCCTTG CTTGCAAAGC CAGGTATGAC CTTGCCCCGT CTACCTTACT GGCATCGTCT CTCATGACTC 001360 001361 TTCCCCTTTT TCACTCTCCA TCTTGCCTTT TCCCAACCAT GCCTGCTAGT GAGCCTTAGC CCTTGTGTTT TCTCTGCCAG 001440 001441 GGATGCATGA CTGGCTTCTT TACTTTATTC TGATCTCTCT GCTCAAATGT CATCTTTTTA GAGATAGCTT TCCTAAACAT 001520 001521 CTTTAAAAGT ACCCCATGAA CTGTGAAACA CCTTTCCTGC TTTTTCTTCA TAGTACTTAT CACTTCCTGA TATTATGTTA 001600 001601 GACAACAAGC AAATAAGTAT ATGCTGTTCC CACTAAAATA TAAGCTCCAT TTGAACAGGA GCCTTGATTA TTCCTGAGTA 001680 001681 TACCCCTAGT GCCCAGAACC TAGTAGGGCT TTAATAAATA TTAGATTCAT TTGTTGAATG AAAAAATGAA TGAATAATTG 001760 001761 AATAAAGATA TCCAGGTAGA GTGTCCGGGC AGCCCAACCT ATGTGAAGCC AGTACAAGAA TGTTTCTGTG ACATAGTGAG 001840 001841 CGCAATTATT CCTCTAAATG ATGAACTTGC ATGAGTACAC AAGGATAAAA TTAAGCACGT AGTTTAGATT TCTGCAAGTC 001920 001921 TCTTCCTCAG ATTGAGGAAA AACAAAGAAA TTGAGCTTAT TCTCACCTCA TTCTTACATG AACTAAATCC AGAATAAAGC 002000 002001 ATCATTTAAA TACCAAGCAC ATCCCTACCT CAGCCACTCA TGGAATACTT TATCTGTAAA GGGACAGATA GATAGTAAAT 002080 002081 ATTTTTGGCT TTGGGGACCG TACAGTCTGT GTCGCCACTA CTCAGCACTT CTGTTGAGGT GTGGAATCAG CCCTAGACAA 002160 002161 CACATAAACA AATGGGTGTG GCTGTGTTCC AATAAAATGT TATTTATAAA ACTAGGAAAT CAGCAGATTT AGTCCACAGG 002240 002241 CTGTAGTTTG CTGACCCTTG AATTAGAGAG TCTTCCCCAA ATCCTCTTCC CAAGTTATTG AAAGAATGCC CATAGGACCA 002320 002321 TAGCTCCCTC ACCTGGTTCT TTCAAGAAAT GAGACAAATT CAGGGATGGT TGGAGGGTGG AACGCCTACC TGTGACATGA 002400 002401 CTATTGAGCC TGATTTCTTT CCTTTTATCT CTTTAAAGTG AGTCAGGTCT TAACTTTAAA CTGTCTCTAA AGTGGCAATA 002480 002481 ACTGGGCCAT GTCAAATACT CCCAATGACA AAATTTCTTC TTGGAGAATG AATGAGGGTT GCATACAGTG GTGTGTTGGT 002560 002561 AAATGTTTAG CAACTGGCTC TCTTACTGAT TTCTGTAGTG TAAATTCTCC CATCCTGGCC ATCTGAAACT ACCAATATGA 002640 002641 TGTCACTTGA TGTAGAGTTG GGAAAAGACA GTCTCTTGAA TAAGTATGAG CTGGTTCCAG CCCACTGCTG AACACATATT 002720 002721 TAAAAGCTAC AATAGCTCTG CTCACTGCCA TTGCAGAGTC TGGAGGAAAG AGTAGCAGGC TTGATAGGAG CAATTGGCTG 002800 002801 AATAATCTTT TGCAATGCCA ATAAATAATG AAAAAGTATA TAAATATAAC GCTGTATAGA AAGCTCTCAA GTTCAGTGTT 002880 002881 TGGTTAAAAT ACATACTCAG TAAATGGTAG CTATTATTGT CTTAGTTTAA GTTATTGCAA GCATTAAAAT TAAATGTTTA 002960 002961 GCTACAGACT CAATCCAGTT TTAATGTCAT TGTGTTAATA AGGCCTCTTA ACATTGAAGC AACAAAGATA AAGGAATTTT 003040 003041 TTTGTAGCTA TTCACGATTC TGCCCAGCTC AAGGTAAAGA TAGCAACAAA ATACTCCAAC CAGAATAAAA GAAGTCTCCA 003120 003121 CTTGACTGCA GCTCTTCGCA ACACTTCACA AGGGTCAAGC TGTGTTAGTT TCCTTCAGTG TTAAACAGAA TGCATCTTAA 003200 003201 GAGAATAGTT CAATTATTGA TTGAATAGTA GGTTCAAGTT GACTATAATC CCAACTAATA CACTCTAAGA CCAGGGATGG 003280 003281 GCCGACAGAA GGGTAAAGTT TTCCACTCAA GTCTCGAGGC AAACACTCAG ATAGAAGTAG TAATATGGAT GCCTTCTATT 003360 003361 ATTTGGTCAA TACAATACTG TTCCAGCCCA GTTGTGCAAA ACTGGTGAAA TAAAAGGCAA AAATATTGAC AACAGTTTGG 003440 003441 GTAACTGGAT TCCAAAATGG GCATCCATCT AAGAG |