Difference between revisions of "NONHSAT017386"
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sequence = <dnaseq>ACCACTGTGTGACCCACCAGTGTGAGAAGCACCAGGATGGGCTCGTGGTGGTCACCACGAAGAAGGCGTGCCCCCCGCTCAGCTGTTCTCTGGTGAGGTCCAGGATCCCCGCTCCAGCCAAGGGGGGCTTCACCCTTAGATGGGTTTGGGGGGCTGTGATCATCCCTGCAGTGCCAGCAGACACCCCCTCCTGCTTGGGGCTGTCCACTCCTGAGCCTGGCCCCATGTCCCCATCCCTCACTTCTGTGGGGGCCGCCGAGCGCCTCGGCACTGAGGGCGCCCCTCTGTCGGCACAGGACGAGGCCCGCATGAGCAAGGACGGCTGCTGCCGCTTCTGCCCGCCGCCCCCGCCCCCGTACCAGAACCGTGAGTGCCCAGCCTGCTGGGCGGGGCGGGCTCCACCCTCAGAGGTCCAGGAGCAGCTGGGCTGGTCCTAAACCCTGTGTTCCTCTCCAGAGTCGACCTGTGCTGTGTACCATAGGAGCCTGATCATCCAGCAGCAGGGCTGCAGCTCCTCGGAGCCCGTGCGCCTGGCTTACTGCCGGGGGAACTGTGGGGACAGCTCTTCCATGTACTCGCTCGAGGGCAACACGGTGGAGCACAGGTGCCAGTGCTGCCAGGAGCTGCGGACCTCGCTGAGGAATGTGACCCTGCACTGCACCGACGGCTCCAGCCGGGCCTTCAGCTACACCGAGGTGGAAGAGTGCGGCTGCATGGGCCGGCGGTGCCCTGCGCCGGGCGACACCCAGCACTCGGAGGAGGCGGAACCCGAGCCCAGCCAGGAGGCAGAGAGTGGGAGCTGGGAGAGAGGCGTCCCAGTGTCCCCCATGCACTGACCAGCACTGCCGCCCTCCTGACCTCCAAGGAGAACCTCCCATATGTCCTCTGAGCTCGGCTTCCAAGGCCAGTGGAACTTGTGCCCCTGTCCAGGCGGCTGCAGCTTTGAACACACTGTCCACGCCCGCTTTCTTGTGGAGGGTGTGGGCTATGGGTCACCTGCTGCCTGGAGGAGGGGCCCTTACCCACCCCGCCTGCAGCCACCTCTCAGGACCAGCCCCGGGGCTGGCCGAGCTCCTCTGGCCATGCATCCAGCCTGCTGTTCTGGGGACGTGAGCATCACCTGAGGGTCTCAGGAATGACGCTTGGACATGGTGATCAGCTGCCTGGTGGCTGCAGGAGGAAGAACCTCACTCCTACCTCAGCCCTCAGCCTGCGCTCCCCTCCTCAGTACATGGCCAGTCTGTTGCATAAATACACTTGAGCATTTTGC</dnaseq>| | sequence = <dnaseq>ACCACTGTGTGACCCACCAGTGTGAGAAGCACCAGGATGGGCTCGTGGTGGTCACCACGAAGAAGGCGTGCCCCCCGCTCAGCTGTTCTCTGGTGAGGTCCAGGATCCCCGCTCCAGCCAAGGGGGGCTTCACCCTTAGATGGGTTTGGGGGGCTGTGATCATCCCTGCAGTGCCAGCAGACACCCCCTCCTGCTTGGGGCTGTCCACTCCTGAGCCTGGCCCCATGTCCCCATCCCTCACTTCTGTGGGGGCCGCCGAGCGCCTCGGCACTGAGGGCGCCCCTCTGTCGGCACAGGACGAGGCCCGCATGAGCAAGGACGGCTGCTGCCGCTTCTGCCCGCCGCCCCCGCCCCCGTACCAGAACCGTGAGTGCCCAGCCTGCTGGGCGGGGCGGGCTCCACCCTCAGAGGTCCAGGAGCAGCTGGGCTGGTCCTAAACCCTGTGTTCCTCTCCAGAGTCGACCTGTGCTGTGTACCATAGGAGCCTGATCATCCAGCAGCAGGGCTGCAGCTCCTCGGAGCCCGTGCGCCTGGCTTACTGCCGGGGGAACTGTGGGGACAGCTCTTCCATGTACTCGCTCGAGGGCAACACGGTGGAGCACAGGTGCCAGTGCTGCCAGGAGCTGCGGACCTCGCTGAGGAATGTGACCCTGCACTGCACCGACGGCTCCAGCCGGGCCTTCAGCTACACCGAGGTGGAAGAGTGCGGCTGCATGGGCCGGCGGTGCCCTGCGCCGGGCGACACCCAGCACTCGGAGGAGGCGGAACCCGAGCCCAGCCAGGAGGCAGAGAGTGGGAGCTGGGAGAGAGGCGTCCCAGTGTCCCCCATGCACTGACCAGCACTGCCGCCCTCCTGACCTCCAAGGAGAACCTCCCATATGTCCTCTGAGCTCGGCTTCCAAGGCCAGTGGAACTTGTGCCCCTGTCCAGGCGGCTGCAGCTTTGAACACACTGTCCACGCCCGCTTTCTTGTGGAGGGTGTGGGCTATGGGTCACCTGCTGCCTGGAGGAGGGGCCCTTACCCACCCCGCCTGCAGCCACCTCTCAGGACCAGCCCCGGGGCTGGCCGAGCTCCTCTGGCCATGCATCCAGCCTGCTGTTCTGGGGACGTGAGCATCACCTGAGGGTCTCAGGAATGACGCTTGGACATGGTGATCAGCTGCCTGGTGGCTGCAGGAGGAAGAACCTCACTCCTACCTCAGCCCTCAGCCTGCGCTCCCCTCCTCAGTACATGGCCAGTCTGTTGCATAAATACACTTGAGCATTTTGC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG007373]] | + | [[Category:Intergenic]][[Category:NONHSAG007373]][[Category:Transcripts]] |
Revision as of 10:51, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT017386 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1270 nt |
| Genomic location |
chr11+:1220625..1222362 |
| Exon number |
2 |
| Exons |
1220625..1221195,1221664..1222362 |
| Genome context |
|
| Sequence |
000001 ACCACTGTGT GACCCACCAG TGTGAGAAGC ACCAGGATGG GCTCGTGGTG GTCACCACGA AGAAGGCGTG CCCCCCGCTC 000080
000081 AGCTGTTCTC TGGTGAGGTC CAGGATCCCC GCTCCAGCCA AGGGGGGCTT CACCCTTAGA TGGGTTTGGG GGGCTGTGAT 000160 000161 CATCCCTGCA GTGCCAGCAG ACACCCCCTC CTGCTTGGGG CTGTCCACTC CTGAGCCTGG CCCCATGTCC CCATCCCTCA 000240 000241 CTTCTGTGGG GGCCGCCGAG CGCCTCGGCA CTGAGGGCGC CCCTCTGTCG GCACAGGACG AGGCCCGCAT GAGCAAGGAC 000320 000321 GGCTGCTGCC GCTTCTGCCC GCCGCCCCCG CCCCCGTACC AGAACCGTGA GTGCCCAGCC TGCTGGGCGG GGCGGGCTCC 000400 000401 ACCCTCAGAG GTCCAGGAGC AGCTGGGCTG GTCCTAAACC CTGTGTTCCT CTCCAGAGTC GACCTGTGCT GTGTACCATA 000480 000481 GGAGCCTGAT CATCCAGCAG CAGGGCTGCA GCTCCTCGGA GCCCGTGCGC CTGGCTTACT GCCGGGGGAA CTGTGGGGAC 000560 000561 AGCTCTTCCA TGTACTCGCT CGAGGGCAAC ACGGTGGAGC ACAGGTGCCA GTGCTGCCAG GAGCTGCGGA CCTCGCTGAG 000640 000641 GAATGTGACC CTGCACTGCA CCGACGGCTC CAGCCGGGCC TTCAGCTACA CCGAGGTGGA AGAGTGCGGC TGCATGGGCC 000720 000721 GGCGGTGCCC TGCGCCGGGC GACACCCAGC ACTCGGAGGA GGCGGAACCC GAGCCCAGCC AGGAGGCAGA GAGTGGGAGC 000800 000801 TGGGAGAGAG GCGTCCCAGT GTCCCCCATG CACTGACCAG CACTGCCGCC CTCCTGACCT CCAAGGAGAA CCTCCCATAT 000880 000881 GTCCTCTGAG CTCGGCTTCC AAGGCCAGTG GAACTTGTGC CCCTGTCCAG GCGGCTGCAG CTTTGAACAC ACTGTCCACG 000960 000961 CCCGCTTTCT TGTGGAGGGT GTGGGCTATG GGTCACCTGC TGCCTGGAGG AGGGGCCCTT ACCCACCCCG CCTGCAGCCA 001040 001041 CCTCTCAGGA CCAGCCCCGG GGCTGGCCGA GCTCCTCTGG CCATGCATCC AGCCTGCTGT TCTGGGGACG TGAGCATCAC 001120 001121 CTGAGGGTCT CAGGAATGAC GCTTGGACAT GGTGATCAGC TGCCTGGTGG CTGCAGGAGG AAGAACCTCA CTCCTACCTC 001200 001201 AGCCCTCAGC CTGCGCTCCC CTCCTCAGTA CATGGCCAGT CTGTTGCATA AATACACTTG AGCATTTTGC |
Predicted Small Protein
| Name | NONHSAT017386_smProtein_569:835 |
| Length | 89 |
| Molecular weight | 9776.6133 |
| Aromaticity | 0.0454545454545 |
| Instability index | 81.5 |
| Isoelectric point | 4.81500244141 |
| Runs | 11 |
| Runs residual | 0.00636363636364 |
| Runs probability | 0.0496940791059 |
| Amino acid sequence | MYSLEGNTVEHRCQCCQELRTSLRNVTLHCTDGSSRAFSYTEVEECGCMGRRCPAPGDTQ HSEEAEPEPSQEAESGSWERGVPVSPMH |
| Secondary structure | LEELLLLLHHHHHHHHHHHHHHLLLEEEEEELLLLLEEEEEEEEELLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLEEELLLLLLLL |
| PRMN | - |
| PiMo | - |
