Difference between revisions of "NONHSAT010449"
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sequence = <dnaseq>TGACCAATACCCGCAAAACACACCCACTAATTAAAATTATTAACTACGCATTTATTGATCTTCCTACATCATCTAACATCTCTACAAAATGAAATTTTGGCTCACTTATTGGTGCCTGCCTTATTCTCCAGATCATCACAGAGTTATTCCTGGCCATACACTCTACATCAGTTACCCTAGCCACTTTCTCGTCAGTTGCTCATATCAGCTGAGATGTAAATTATGGCTGAATGGTCTGCTATTTTCATGCTAACGGCGCCTCAATATTTTTCATCTGCTTTTTCTTACACATTGGCTGAGGCCTATACTACGGGTCATTCCTATTTTTAGAAACCTGAAATATTGGCATTATACTCCTTCTTACCACTATAGCAACAGCATTCATAGGCTACATACTCCCATGAGGCTAAATATCATTCTGAGGTGCTACAGTAATTACAAATCTATTATCAGCCATCCCAAATATTGGAACCGACCTTGTACAATGAATCTCAGGTGGATTCTCAGTTGACAAAGCCACCTTCACACGATTTTTCCCCTTTCATTTCATCTTACCCTTCATCATTACAGCTCTAGCAACTGTTCACCTTTTATTTTTACATGAAACAGAATCTAACAACCCTTTAGGGATTTCATCAGACCCCAGCAAAATCACTTTTCATCCCCTACTACACAACCAAAGACATTCTAGGTTTAATTTTTCTCCTCCTCCTCCTAACAACTCTAGTACTATTTTCACCTGATCTCCTGAGTGACCTAGATAATTACACTTTAGCCAACCCCCTTAATACCCCACCCCACATTAAGCCAGAATGATATTTTTTGTTTGCATACGCAATCTTACGATCCATCCCTAACAAATTAGGAGGCGTATTAGAACTCATATCTTCCATTCTCATTCTAGCAGTTATTCCCATACTTCACACATCTAAACAACAAAGGGTAATATTTCAGCCATTCAGTCACTGCCTATTCTGAATCCTAGTGGCTGACTTACTCACACTCACATGAATCGGAGGACAGCCAGTCGAATACCGTTTTATTACGATTGGGCAGGCAGCATCTATTATATACTTCTCTCCCATTCTCACACTTACACCACTCACTACTTAAATTAAAATTCCCCT</dnaseq>| | sequence = <dnaseq>TGACCAATACCCGCAAAACACACCCACTAATTAAAATTATTAACTACGCATTTATTGATCTTCCTACATCATCTAACATCTCTACAAAATGAAATTTTGGCTCACTTATTGGTGCCTGCCTTATTCTCCAGATCATCACAGAGTTATTCCTGGCCATACACTCTACATCAGTTACCCTAGCCACTTTCTCGTCAGTTGCTCATATCAGCTGAGATGTAAATTATGGCTGAATGGTCTGCTATTTTCATGCTAACGGCGCCTCAATATTTTTCATCTGCTTTTTCTTACACATTGGCTGAGGCCTATACTACGGGTCATTCCTATTTTTAGAAACCTGAAATATTGGCATTATACTCCTTCTTACCACTATAGCAACAGCATTCATAGGCTACATACTCCCATGAGGCTAAATATCATTCTGAGGTGCTACAGTAATTACAAATCTATTATCAGCCATCCCAAATATTGGAACCGACCTTGTACAATGAATCTCAGGTGGATTCTCAGTTGACAAAGCCACCTTCACACGATTTTTCCCCTTTCATTTCATCTTACCCTTCATCATTACAGCTCTAGCAACTGTTCACCTTTTATTTTTACATGAAACAGAATCTAACAACCCTTTAGGGATTTCATCAGACCCCAGCAAAATCACTTTTCATCCCCTACTACACAACCAAAGACATTCTAGGTTTAATTTTTCTCCTCCTCCTCCTAACAACTCTAGTACTATTTTCACCTGATCTCCTGAGTGACCTAGATAATTACACTTTAGCCAACCCCCTTAATACCCCACCCCACATTAAGCCAGAATGATATTTTTTGTTTGCATACGCAATCTTACGATCCATCCCTAACAAATTAGGAGGCGTATTAGAACTCATATCTTCCATTCTCATTCTAGCAGTTATTCCCATACTTCACACATCTAAACAACAAAGGGTAATATTTCAGCCATTCAGTCACTGCCTATTCTGAATCCTAGTGGCTGACTTACTCACACTCACATGAATCGGAGGACAGCCAGTCGAATACCGTTTTATTACGATTGGGCAGGCAGCATCTATTATATACTTCTCTCCCATTCTCACACTTACACCACTCACTACTTAAATTAAAATTCCCCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG004763]] | + | [[Category:Intergenic]][[Category:NONHSAG004763]][[Category:Transcripts]] |
Revision as of 10:54, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT010449 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1127 nt |
| Genomic location |
chr1-:238111317..238112443 |
| Exon number |
1 |
| Exons |
238111317..238112443 |
| Genome context |
|
| Sequence |
000001 TGACCAATAC CCGCAAAACA CACCCACTAA TTAAAATTAT TAACTACGCA TTTATTGATC TTCCTACATC ATCTAACATC 000080
000081 TCTACAAAAT GAAATTTTGG CTCACTTATT GGTGCCTGCC TTATTCTCCA GATCATCACA GAGTTATTCC TGGCCATACA 000160 000161 CTCTACATCA GTTACCCTAG CCACTTTCTC GTCAGTTGCT CATATCAGCT GAGATGTAAA TTATGGCTGA ATGGTCTGCT 000240 000241 ATTTTCATGC TAACGGCGCC TCAATATTTT TCATCTGCTT TTTCTTACAC ATTGGCTGAG GCCTATACTA CGGGTCATTC 000320 000321 CTATTTTTAG AAACCTGAAA TATTGGCATT ATACTCCTTC TTACCACTAT AGCAACAGCA TTCATAGGCT ACATACTCCC 000400 000401 ATGAGGCTAA ATATCATTCT GAGGTGCTAC AGTAATTACA AATCTATTAT CAGCCATCCC AAATATTGGA ACCGACCTTG 000480 000481 TACAATGAAT CTCAGGTGGA TTCTCAGTTG ACAAAGCCAC CTTCACACGA TTTTTCCCCT TTCATTTCAT CTTACCCTTC 000560 000561 ATCATTACAG CTCTAGCAAC TGTTCACCTT TTATTTTTAC ATGAAACAGA ATCTAACAAC CCTTTAGGGA TTTCATCAGA 000640 000641 CCCCAGCAAA ATCACTTTTC ATCCCCTACT ACACAACCAA AGACATTCTA GGTTTAATTT TTCTCCTCCT CCTCCTAACA 000720 000721 ACTCTAGTAC TATTTTCACC TGATCTCCTG AGTGACCTAG ATAATTACAC TTTAGCCAAC CCCCTTAATA CCCCACCCCA 000800 000801 CATTAAGCCA GAATGATATT TTTTGTTTGC ATACGCAATC TTACGATCCA TCCCTAACAA ATTAGGAGGC GTATTAGAAC 000880 000881 TCATATCTTC CATTCTCATT CTAGCAGTTA TTCCCATACT TCACACATCT AAACAACAAA GGGTAATATT TCAGCCATTC 000960 000961 AGTCACTGCC TATTCTGAAT CCTAGTGGCT GACTTACTCA CACTCACATG AATCGGAGGA CAGCCAGTCG AATACCGTTT 001040 001041 TATTACGATT GGGCAGGCAG CATCTATTAT ATACTTCTCT CCCATTCTCA CACTTACACC ACTCACTACT TAAATTAAAA 001120 001121 TTCCCCT |
Predicted Small Protein
| Name | NONHSAT010449_smProtein_1007:1117 |
| Length | 37 |
| Molecular weight | 4412.8945 |
| Aromaticity | 0.222222222222 |
| Instability index | 66.9502777778 |
| Isoelectric point | 9.30120849609 |
| Runs | 8 |
| Runs residual | 0.0417637917638 |
| Runs probability | 0.0329226285108 |
| Amino acid sequence | MNRRTASRIPFYYDWAGSIYYILLSHSHTYTTHYLN |
| Secondary structure | LLLLLLLLLLEEELLHHHEEEELLLLLLLLLEEEEL |
| PRMN | - |
| PiMo | - |
