Difference between revisions of "NONHSAT027592"
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sequence = <dnaseq>ATTAGAGGGCCAGAGCCGGGTCCTGAACCAACAATAGACGGAGATGTGCTAGACACACTGGAGGTGCTGGGGTATAAGGGACCATTGCTAGAGGAGCAAGCCCTTATGAAGGCAGCAGAGTGGACTATATGTAGGAGCATATACGGTATAGGATTATATATATAGGCTTTTATACAGGAAGAAGGTGGTATATACTGTAAAGGAATAGATATATAAACTATATAAATTCCTATACAGGATATGGTTAGGCTTTCAAATAAAATCATTATGCAACTTGGAAGAAAGTATGACTTCTGCTGGAAGAGATGATCTAGAGAGCTTCCAGCTTGAGGTAAATGATTTTTTTAAAAGAAATGGCATGTCCATATTCTGTACTCATATCAGGAGATACTAAAGATCATTTTAAAAAAGGAGGACTggctgggtacaatggctcacacctgttatcccagcactttgggagaccaaggtggacagattgcttgagtcccaggagttcaaggccagcctgggcaacatggtgaaccccatctctacaaaaaatacaaaaatcagctgggtgtagtggtgcatgcatgttgttccaactacttgggggcctgaggtggaagaattgcttaagtcaaggaggtcaagcccacagtgagctgagatcgcgccactgtaAATAAAAAAATATAAAAAGGACTGTTTGAAACTCCTATTATTTTTAAGTACAGAACTTGAAGCTTCACAGATATTACAGAACAAGAAACATTAAAATTCTCAATTAGATAAAAATAATGAAATTTATCAGGAAGTTCAAGTTCTGTGTGATAACCTTGGTGTACCCAAGTAAACAACTTCTGACATTCTGGTTATGCTAAACCAAGTGGAATCAAAGGTGAAAGACAggcaggacgcagtggctcatgcctataatcccagcactttgtgaggcagagatgggaggatctcttgagcccaggagttggagaccaatttgggtgacatagcaagatcccatctTATTTCaaatttttaaaaattgttaatttttttattaaaattaaaGAAAACCACTCTGCTGAAAATTAATTTAAATTTGAAACAGGCAGAACAACTGGAAAGAGTCAATGATGCTCTTTCCTGTGAACATGAGTGCCTCTAGCGAATGTTATGAAACAATTAGATGCGGCAATACAGTCCGTTGCACGGTGTGATACAGCCAAGGTAAGAAAAGATGACACAGCAAGAATTTACCAGCCTCAGTGTTATGCTTTGTCACCCAAGACAGCGATTATAATGGTGCATCTACTTGCTGCTCATGATAATCTATCCAAGATCATTAGGACAAGCAGTGGAGCCAGCCAGATGATGGCATGTGCCATTAATAAGGTG</dnaseq>| | sequence = <dnaseq>ATTAGAGGGCCAGAGCCGGGTCCTGAACCAACAATAGACGGAGATGTGCTAGACACACTGGAGGTGCTGGGGTATAAGGGACCATTGCTAGAGGAGCAAGCCCTTATGAAGGCAGCAGAGTGGACTATATGTAGGAGCATATACGGTATAGGATTATATATATAGGCTTTTATACAGGAAGAAGGTGGTATATACTGTAAAGGAATAGATATATAAACTATATAAATTCCTATACAGGATATGGTTAGGCTTTCAAATAAAATCATTATGCAACTTGGAAGAAAGTATGACTTCTGCTGGAAGAGATGATCTAGAGAGCTTCCAGCTTGAGGTAAATGATTTTTTTAAAAGAAATGGCATGTCCATATTCTGTACTCATATCAGGAGATACTAAAGATCATTTTAAAAAAGGAGGACTggctgggtacaatggctcacacctgttatcccagcactttgggagaccaaggtggacagattgcttgagtcccaggagttcaaggccagcctgggcaacatggtgaaccccatctctacaaaaaatacaaaaatcagctgggtgtagtggtgcatgcatgttgttccaactacttgggggcctgaggtggaagaattgcttaagtcaaggaggtcaagcccacagtgagctgagatcgcgccactgtaAATAAAAAAATATAAAAAGGACTGTTTGAAACTCCTATTATTTTTAAGTACAGAACTTGAAGCTTCACAGATATTACAGAACAAGAAACATTAAAATTCTCAATTAGATAAAAATAATGAAATTTATCAGGAAGTTCAAGTTCTGTGTGATAACCTTGGTGTACCCAAGTAAACAACTTCTGACATTCTGGTTATGCTAAACCAAGTGGAATCAAAGGTGAAAGACAggcaggacgcagtggctcatgcctataatcccagcactttgtgaggcagagatgggaggatctcttgagcccaggagttggagaccaatttgggtgacatagcaagatcccatctTATTTCaaatttttaaaaattgttaatttttttattaaaattaaaGAAAACCACTCTGCTGAAAATTAATTTAAATTTGAAACAGGCAGAACAACTGGAAAGAGTCAATGATGCTCTTTCCTGTGAACATGAGTGCCTCTAGCGAATGTTATGAAACAATTAGATGCGGCAATACAGTCCGTTGCACGGTGTGATACAGCCAAGGTAAGAAAAGATGACACAGCAAGAATTTACCAGCCTCAGTGTTATGCTTTGTCACCCAAGACAGCGATTATAATGGTGCATCTACTTGCTGCTCATGATAATCTATCCAAGATCATTAGGACAAGCAGTGGAGCCAGCCAGATGATGGCATGTGCCATTAATAAGGTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG010835]] | + | [[Category:Intergenic]][[Category:NONHSAG010835]][[Category:Transcripts]] |
Revision as of 11:03, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027592 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1380 nt |
Genomic location |
chr12+:32106823..32108202 |
Exon number |
1 |
Exons |
32106823..32108202 |
Genome context |
|
Sequence |
000001 ATTAGAGGGC CAGAGCCGGG TCCTGAACCA ACAATAGACG GAGATGTGCT AGACACACTG GAGGTGCTGG GGTATAAGGG 000080
000081 ACCATTGCTA GAGGAGCAAG CCCTTATGAA GGCAGCAGAG TGGACTATAT GTAGGAGCAT ATACGGTATA GGATTATATA 000160 000161 TATAGGCTTT TATACAGGAA GAAGGTGGTA TATACTGTAA AGGAATAGAT ATATAAACTA TATAAATTCC TATACAGGAT 000240 000241 ATGGTTAGGC TTTCAAATAA AATCATTATG CAACTTGGAA GAAAGTATGA CTTCTGCTGG AAGAGATGAT CTAGAGAGCT 000320 000321 TCCAGCTTGA GGTAAATGAT TTTTTTAAAA GAAATGGCAT GTCCATATTC TGTACTCATA TCAGGAGATA CTAAAGATCA 000400 000401 TTTTAAAAAA GGAGGACTgg ctgggtacaa tggctcacac ctgttatccc agcactttgg gagaccaagg tggacagatt 000480 000481 gcttgagtcc caggagttca aggccagcct gggcaacatg gtgaacccca tctctacaaa aaatacaaaa atcagctggg 000560 000561 tgtagtggtg catgcatgtt gttccaacta cttgggggcc tgaggtggaa gaattgctta agtcaaggag gtcaagccca 000640 000641 cagtgagctg agatcgcgcc actgtaAATA AAAAAATATA AAAAGGACTG TTTGAAACTC CTATTATTTT TAAGTACAGA 000720 000721 ACTTGAAGCT TCACAGATAT TACAGAACAA GAAACATTAA AATTCTCAAT TAGATAAAAA TAATGAAATT TATCAGGAAG 000800 000801 TTCAAGTTCT GTGTGATAAC CTTGGTGTAC CCAAGTAAAC AACTTCTGAC ATTCTGGTTA TGCTAAACCA AGTGGAATCA 000880 000881 AAGGTGAAAG ACAggcagga cgcagtggct catgcctata atcccagcac tttgtgaggc agagatggga ggatctcttg 000960 000961 agcccaggag ttggagacca atttgggtga catagcaaga tcccatctTA TTTCaaattt ttaaaaattg ttaatttttt 001040 001041 tattaaaatt aaaGAAAACC ACTCTGCTGA AAATTAATTT AAATTTGAAA CAGGCAGAAC AACTGGAAAG AGTCAATGAT 001120 001121 GCTCTTTCCT GTGAACATGA GTGCCTCTAG CGAATGTTAT GAAACAATTA GATGCGGCAA TACAGTCCGT TGCACGGTGT 001200 001201 GATACAGCCA AGGTAAGAAA AGATGACACA GCAAGAATTT ACCAGCCTCA GTGTTATGCT TTGTCACCCA AGACAGCGAT 001280 001281 TATAATGGTG CATCTACTTG CTGCTCATGA TAATCTATCC AAGATCATTA GGACAAGCAG TGGAGCCAGC CAGATGATGG 001360 001361 CATGTGCCAT TAATAAGGTG |
Predicted Small Protein
Name | NONHSAT027592_smProtein_335:523 |
Length | 63 |
Molecular weight | 7010.9733 |
Aromaticity | 0.129032258065 |
Instability index | 44.7403225806 |
Isoelectric point | 9.50897216797 |
Runs | 12 |
Runs residual | 0.0399078341014 |
Runs probability | 0.0250986280399 |
Amino acid sequence | MIFLKEMACPYSVLISGDTKDHFKKGGLAGYNGSHLLSQHFGRPRWTDCLSPRSSRPAWA TW |
Secondary structure | LEEHHHLLLLLEEEELLLLHHHHHLLLLEELLLLHHHLLLLLLLLLLLLLLLLLLLLLLL LL |
PRMN | - |
PiMo | - |