Difference between revisions of "ENST00000504263.1"

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sequence = <dnaseq>AAAGTGAGAGAGGGAGGCAGAAGAGGAAGTCAGAGCGATGTGCTGTGAAATCTACTACCGTTTGCTGGTTTTGAAAATGGAGAAAAAGAGTGAGGAACTGAGAAACATGGATGGCCTTGGGAACGTGGAAAAGGGTCACTGAAATGGGACGACATGAACTCAAGGAGGCTATTTATGACCATGTCATTTGCAACATGAAGAAAGCTTATCTGGAGTGAAAGTAAATGAGACCAACAGAGATGAGAGACCCGGAGAAATCCTGGTTACACTGCTTGAATCCTGTCAGTCCTATACTGGAGTCCTGTTAATACAAAATAATAGTAATAATCCCTCTGTTTCTTATGTTTATGCCAACTTCAACAAAAAGAAACTTGACTAAGAGACAATATAAGAATTTAATGTGTAATTAAGAAAGAACTCTCCACCACGGGGAATGTGAAAGGTATATGAGTCCCTTTTCACGATGCGATGTCATGTCTTTTAAATAAGCCATACTTTATGTTCAATAAAAAGAGAATAAGCAGGATTCGCAAGAGAACACAATCCCTTTTTAACTGCTGGGAAGATACTTTTAGTCATTAATGACTGGACGACAATTTGGGACACATATATGGATATTGGCCGGTTTGTGATGATGTGATTGGGCCTCTAAGTGACAACATTGTTCCCTGTATAGAGTGAGTGGCAAGTGCATTTATAAAATTGGCCATCATGGCTGTTAAATTTATGAGTCTAGAAGTGTGCCTCTCAAACAAGTATTTGAGAGGTTATCATGAAGAAAAACAAAATTAAAATTATTCTGCTGAGCTCTCAAAGGCAGAACTATTGAATCAAAATTATAGGAAGGAAGGTTCAAACCAACAATAAGAATGCCTCTCTTGCATTCCTCATCACTAGAAGTTTCTGATAAGATTTTTAGAAAAATTTAGACAGTATTCTTGAATTGAGCAGGGGGATAACACAGAGATAATTCAAATGTGGTTTGATGAACTTCTAAAATGGTTCCAACTATAAACTTCAATTATTCTAGCCTCCAAGACCTACACATAACTGTGCAATGTGCAAATTATTCAATAGTAACATAGAATTCTGAATAATTAGCATTTTCTCATGGTTTGATATTTGTATAAAGCAATCTTAGCAGTCTGAATAACTAGAATACTTCAAAGCAATATGTTTTATTGCTTTATATTTAAAGAAACCATGTCAGACATTTAAAATGAATGGCTGCTATCAGGAAAATGGATCTCAAGACACAAGAAATAAATCACAATGACTTCCTTATTTGTGGAAATTCTTCTTGTACTAGAAAGGAAAAGTAGAAGTATGGGAAAATGTCTTCCAGAAAATTACATTTTCCCAAAGTTTATTTTAAATTTTAATAATTTAATCAACCATCTGATTCTGATTTCAAGTGTCACAGAAGTTCATTTTATTATAAACAACAACAAAAAAACTTTGTAGTCTTGTAAACACTGGTGACAGAGAATAACACCACTAACCATGCTGAGCAGAAAACAGGAGCCAAGTAAGGGAAAAAGATTCTTTATGTCACTCATCAATTTAAAAGTGTTTTTCACCCCAGGACCATCCTGAAGCCAAAACTGGGGAAACATTTACTACTTTTACAAACAAAAATTTATATTCCATCCCTTGCATGATGTGTGTGTCTCCGACATTTGGTTTCTGTCTTAAGTGTCTAAAGAAAGGCCTTATTTAGAGCAAAATACATTTTTGTGGGCATTGATGTGAATTTCAGGTCTGGGTTATCAATGACCTAAATTGAGAAAATAGAGGGGCTGTGTGGACAAGGAGAGAGAAGAGAGCATACAGCTGCCCTATGCCGTTGCTCTGTTCACAGTAAGGATTGAGCCATTCTAATCCCCTTGGATTTTTTATCTACCAAAACAGCTTGGGCCCATCAGCAAATTGCAGTGGCATATGGTCCAGGTTTACGAGTAATCTGGCACATGATTAAGGCAAGGGGGATGTCATCTTTCAGCAAATACTGAAAATATTGTAGAAGAATTTGGTAGAGTTTTTAAATTCAAACTGATAAAATTGTAACTATTAAATACTTCCCCAAATCAA</dnaseq>|
 
sequence = <dnaseq>AAAGTGAGAGAGGGAGGCAGAAGAGGAAGTCAGAGCGATGTGCTGTGAAATCTACTACCGTTTGCTGGTTTTGAAAATGGAGAAAAAGAGTGAGGAACTGAGAAACATGGATGGCCTTGGGAACGTGGAAAAGGGTCACTGAAATGGGACGACATGAACTCAAGGAGGCTATTTATGACCATGTCATTTGCAACATGAAGAAAGCTTATCTGGAGTGAAAGTAAATGAGACCAACAGAGATGAGAGACCCGGAGAAATCCTGGTTACACTGCTTGAATCCTGTCAGTCCTATACTGGAGTCCTGTTAATACAAAATAATAGTAATAATCCCTCTGTTTCTTATGTTTATGCCAACTTCAACAAAAAGAAACTTGACTAAGAGACAATATAAGAATTTAATGTGTAATTAAGAAAGAACTCTCCACCACGGGGAATGTGAAAGGTATATGAGTCCCTTTTCACGATGCGATGTCATGTCTTTTAAATAAGCCATACTTTATGTTCAATAAAAAGAGAATAAGCAGGATTCGCAAGAGAACACAATCCCTTTTTAACTGCTGGGAAGATACTTTTAGTCATTAATGACTGGACGACAATTTGGGACACATATATGGATATTGGCCGGTTTGTGATGATGTGATTGGGCCTCTAAGTGACAACATTGTTCCCTGTATAGAGTGAGTGGCAAGTGCATTTATAAAATTGGCCATCATGGCTGTTAAATTTATGAGTCTAGAAGTGTGCCTCTCAAACAAGTATTTGAGAGGTTATCATGAAGAAAAACAAAATTAAAATTATTCTGCTGAGCTCTCAAAGGCAGAACTATTGAATCAAAATTATAGGAAGGAAGGTTCAAACCAACAATAAGAATGCCTCTCTTGCATTCCTCATCACTAGAAGTTTCTGATAAGATTTTTAGAAAAATTTAGACAGTATTCTTGAATTGAGCAGGGGGATAACACAGAGATAATTCAAATGTGGTTTGATGAACTTCTAAAATGGTTCCAACTATAAACTTCAATTATTCTAGCCTCCAAGACCTACACATAACTGTGCAATGTGCAAATTATTCAATAGTAACATAGAATTCTGAATAATTAGCATTTTCTCATGGTTTGATATTTGTATAAAGCAATCTTAGCAGTCTGAATAACTAGAATACTTCAAAGCAATATGTTTTATTGCTTTATATTTAAAGAAACCATGTCAGACATTTAAAATGAATGGCTGCTATCAGGAAAATGGATCTCAAGACACAAGAAATAAATCACAATGACTTCCTTATTTGTGGAAATTCTTCTTGTACTAGAAAGGAAAAGTAGAAGTATGGGAAAATGTCTTCCAGAAAATTACATTTTCCCAAAGTTTATTTTAAATTTTAATAATTTAATCAACCATCTGATTCTGATTTCAAGTGTCACAGAAGTTCATTTTATTATAAACAACAACAAAAAAACTTTGTAGTCTTGTAAACACTGGTGACAGAGAATAACACCACTAACCATGCTGAGCAGAAAACAGGAGCCAAGTAAGGGAAAAAGATTCTTTATGTCACTCATCAATTTAAAAGTGTTTTTCACCCCAGGACCATCCTGAAGCCAAAACTGGGGAAACATTTACTACTTTTACAAACAAAAATTTATATTCCATCCCTTGCATGATGTGTGTGTCTCCGACATTTGGTTTCTGTCTTAAGTGTCTAAAGAAAGGCCTTATTTAGAGCAAAATACATTTTTGTGGGCATTGATGTGAATTTCAGGTCTGGGTTATCAATGACCTAAATTGAGAAAATAGAGGGGCTGTGTGGACAAGGAGAGAGAAGAGAGCATACAGCTGCCCTATGCCGTTGCTCTGTTCACAGTAAGGATTGAGCCATTCTAATCCCCTTGGATTTTTTATCTACCAAAACAGCTTGGGCCCATCAGCAAATTGCAGTGGCATATGGTCCAGGTTTACGAGTAATCTGGCACATGATTAAGGCAAGGGGGATGTCATCTTTCAGCAAATACTGAAAATATTGTAGAAGAATTTGGTAGAGTTTTTAAATTCAAACTGATAAAATTGTAACTATTAAATACTTCCCCAAATCAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000251321.1]][[Category:lnc-PRDM8-1]]
+
[[Category:Intergenic]][[Category:ENSG00000251321.1]][[Category:lnc-PRDM8-1]][[Category:Transcripts]]

Revision as of 11:10, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000504263.1

Source

Gencode19

Same with

lnc-PRDM8-1:1

Classification

intergenic

Length

2091 nt

Genomic location

chr4+:80748625..80784401

Exon number

2

Exons

80748625..80748757,80782444..80784401

Genome context

Sequence
000001 AAAGTGAGAG AGGGAGGCAG AAGAGGAAGT CAGAGCGATG TGCTGTGAAA TCTACTACCG TTTGCTGGTT TTGAAAATGG 000080
000081 AGAAAAAGAG TGAGGAACTG AGAAACATGG ATGGCCTTGG GAACGTGGAA AAGGGTCACT GAAATGGGAC GACATGAACT 000160
000161 CAAGGAGGCT ATTTATGACC ATGTCATTTG CAACATGAAG AAAGCTTATC TGGAGTGAAA GTAAATGAGA CCAACAGAGA 000240
000241 TGAGAGACCC GGAGAAATCC TGGTTACACT GCTTGAATCC TGTCAGTCCT ATACTGGAGT CCTGTTAATA CAAAATAATA 000320
000321 GTAATAATCC CTCTGTTTCT TATGTTTATG CCAACTTCAA CAAAAAGAAA CTTGACTAAG AGACAATATA AGAATTTAAT 000400
000401 GTGTAATTAA GAAAGAACTC TCCACCACGG GGAATGTGAA AGGTATATGA GTCCCTTTTC ACGATGCGAT GTCATGTCTT 000480
000481 TTAAATAAGC CATACTTTAT GTTCAATAAA AAGAGAATAA GCAGGATTCG CAAGAGAACA CAATCCCTTT TTAACTGCTG 000560
000561 GGAAGATACT TTTAGTCATT AATGACTGGA CGACAATTTG GGACACATAT ATGGATATTG GCCGGTTTGT GATGATGTGA 000640
000641 TTGGGCCTCT AAGTGACAAC ATTGTTCCCT GTATAGAGTG AGTGGCAAGT GCATTTATAA AATTGGCCAT CATGGCTGTT 000720
000721 AAATTTATGA GTCTAGAAGT GTGCCTCTCA AACAAGTATT TGAGAGGTTA TCATGAAGAA AAACAAAATT AAAATTATTC 000800
000801 TGCTGAGCTC TCAAAGGCAG AACTATTGAA TCAAAATTAT AGGAAGGAAG GTTCAAACCA ACAATAAGAA TGCCTCTCTT 000880
000881 GCATTCCTCA TCACTAGAAG TTTCTGATAA GATTTTTAGA AAAATTTAGA CAGTATTCTT GAATTGAGCA GGGGGATAAC 000960
000961 ACAGAGATAA TTCAAATGTG GTTTGATGAA CTTCTAAAAT GGTTCCAACT ATAAACTTCA ATTATTCTAG CCTCCAAGAC 001040
001041 CTACACATAA CTGTGCAATG TGCAAATTAT TCAATAGTAA CATAGAATTC TGAATAATTA GCATTTTCTC ATGGTTTGAT 001120
001121 ATTTGTATAA AGCAATCTTA GCAGTCTGAA TAACTAGAAT ACTTCAAAGC AATATGTTTT ATTGCTTTAT ATTTAAAGAA 001200
001201 ACCATGTCAG ACATTTAAAA TGAATGGCTG CTATCAGGAA AATGGATCTC AAGACACAAG AAATAAATCA CAATGACTTC 001280
001281 CTTATTTGTG GAAATTCTTC TTGTACTAGA AAGGAAAAGT AGAAGTATGG GAAAATGTCT TCCAGAAAAT TACATTTTCC 001360
001361 CAAAGTTTAT TTTAAATTTT AATAATTTAA TCAACCATCT GATTCTGATT TCAAGTGTCA CAGAAGTTCA TTTTATTATA 001440
001441 AACAACAACA AAAAAACTTT GTAGTCTTGT AAACACTGGT GACAGAGAAT AACACCACTA ACCATGCTGA GCAGAAAACA 001520
001521 GGAGCCAAGT AAGGGAAAAA GATTCTTTAT GTCACTCATC AATTTAAAAG TGTTTTTCAC CCCAGGACCA TCCTGAAGCC 001600
001601 AAAACTGGGG AAACATTTAC TACTTTTACA AACAAAAATT TATATTCCAT CCCTTGCATG ATGTGTGTGT CTCCGACATT 001680
001681 TGGTTTCTGT CTTAAGTGTC TAAAGAAAGG CCTTATTTAG AGCAAAATAC ATTTTTGTGG GCATTGATGT GAATTTCAGG 001760
001761 TCTGGGTTAT CAATGACCTA AATTGAGAAA ATAGAGGGGC TGTGTGGACA AGGAGAGAGA AGAGAGCATA CAGCTGCCCT 001840
001841 ATGCCGTTGC TCTGTTCACA GTAAGGATTG AGCCATTCTA ATCCCCTTGG ATTTTTTATC TACCAAAACA GCTTGGGCCC 001920
001921 ATCAGCAAAT TGCAGTGGCA TATGGTCCAG GTTTACGAGT AATCTGGCAC ATGATTAAGG CAAGGGGGAT GTCATCTTTC 002000
002001 AGCAAATACT GAAAATATTG TAGAAGAATT TGGTAGAGTT TTTAAATTCA AACTGATAAA ATTGTAACTA TTAAATACTT 002080
002081 CCCCAAATCA A
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