Difference between revisions of "NONHSAT117410"
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sequence = <dnaseq>TCCCTCCAGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCTATCACATTTGTGTCCGATGAGAATGATGCCAAGATCCTCAATGATGTGCAGGATCGCTTTGAGGTCCTCCCTGTTCCTTAGTGTGTTTGTCCTAAATCCCATCACATAGGTCATGGGCATCTGATGCATAATGGACACTTGACTGGTTCATGCCCCCTGGTCTTTGATGCTGTGTTGGGATGTTTTTCTGACCTTTATGTGGGGTTTCTGTCTTCTCTCATCATATTACATCCCTTCCCTCACCCCCACGTCCGTCCTCTGAACCCAGGCAGTACACCAGTGTCTGCATGTGTGCCGTGTGTTCCTGCCTCACTTTCCCCTTTTCATGCCTTATTCTGACCATGCTACGTTTTCTTCTCAGTTGAACAGACACGGTAGAAGACTCGCCCATTTTGGAATGTGACCGTCTGTCCTTCAGGAGAGGACACCAGGGTGGGGGTGAAGGAGACACTACTGCCCCCACCCCTGACAGCCCCCACCCCATGGCTTCCATCTTTTGCATCACCACCACTCCTGAACCCCCATTTCTGATTTGTCAGAATTTTTTTTTAACAAAACTAAAAATGAAA</dnaseq>| | sequence = <dnaseq>TCCCTCCAGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCTATCACATTTGTGTCCGATGAGAATGATGCCAAGATCCTCAATGATGTGCAGGATCGCTTTGAGGTCCTCCCTGTTCCTTAGTGTGTTTGTCCTAAATCCCATCACATAGGTCATGGGCATCTGATGCATAATGGACACTTGACTGGTTCATGCCCCCTGGTCTTTGATGCTGTGTTGGGATGTTTTTCTGACCTTTATGTGGGGTTTCTGTCTTCTCTCATCATATTACATCCCTTCCCTCACCCCCACGTCCGTCCTCTGAACCCAGGCAGTACACCAGTGTCTGCATGTGTGCCGTGTGTTCCTGCCTCACTTTCCCCTTTTCATGCCTTATTCTGACCATGCTACGTTTTCTTCTCAGTTGAACAGACACGGTAGAAGACTCGCCCATTTTGGAATGTGACCGTCTGTCCTTCAGGAGAGGACACCAGGGTGGGGGTGAAGGAGACACTACTGCCCCCACCCCTGACAGCCCCCACCCCATGGCTTCCATCTTTTGCATCACCACCACTCCTGAACCCCCATTTCTGATTTGTCAGAATTTTTTTTTAACAAAACTAAAAATGAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG046112]] | + | [[Category:Sense]][[Category:NONHSAG046112]][[Category:Transcripts]] |
Revision as of 11:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT117410 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
617 nt |
| Genomic location |
chr6_mann_hap4-:2840936..2841627 |
| Exon number |
2 |
| Exons |
2840936..2841441,2841517..2841627 |
| Genome context |
|
| Sequence |
000001 TCCCTCCAGG TGGCCAGAGC AGGCCGGTTT GGCACCAAGG GCTTGGCTAT CACATTTGTG TCCGATGAGA ATGATGCCAA 000080
000081 GATCCTCAAT GATGTGCAGG ATCGCTTTGA GGTCCTCCCT GTTCCTTAGT GTGTTTGTCC TAAATCCCAT CACATAGGTC 000160 000161 ATGGGCATCT GATGCATAAT GGACACTTGA CTGGTTCATG CCCCCTGGTC TTTGATGCTG TGTTGGGATG TTTTTCTGAC 000240 000241 CTTTATGTGG GGTTTCTGTC TTCTCTCATC ATATTACATC CCTTCCCTCA CCCCCACGTC CGTCCTCTGA ACCCAGGCAG 000320 000321 TACACCAGTG TCTGCATGTG TGCCGTGTGT TCCTGCCTCA CTTTCCCCTT TTCATGCCTT ATTCTGACCA TGCTACGTTT 000400 000401 TCTTCTCAGT TGAACAGACA CGGTAGAAGA CTCGCCCATT TTGGAATGTG ACCGTCTGTC CTTCAGGAGA GGACACCAGG 000480 000481 GTGGGGGTGA AGGAGACACT ACTGCCCCCA CCCCTGACAG CCCCCACCCC ATGGCTTCCA TCTTTTGCAT CACCACCACT 000560 000561 CCTGAACCCC CATTTCTGAT TTGTCAGAAT TTTTTTTTAA CAAAACTAAA AATGAAA |
Predicted Small Protein
| Name | NONHSAT117410_smProtein_335:412 |
| Length | 26 |
| Molecular weight | 2813.553 |
| Aromaticity | 0.12 |
| Instability index | 86.84 |
| Isoelectric point | 7.66644287109 |
| Runs | 5 |
| Runs residual | 0.00830188679245 |
| Runs probability | 0.0496025437201 |
| Amino acid sequence | MCAVCSCLTFPFSCLILTMLRFLLS |
| Secondary structure | LEEELLLLLLLHHHHHHHHHHHHHL |
| PRMN | LLLLHHHHHHHHHHHHHHHHHHHLL |
| PiMo | ooooTTTTTTTTTTTTTTTTTTTii |
