Difference between revisions of "ENST00000437795.1"
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sequence = <dnaseq>AGAGCCCCAGAGGCAGAGCTGCCCAAGGCTTTGGGAGCCCACCTCTTGCATCACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGACGTGCCCGTGTCCCCTTCCTCCACCACAAGATTGTAAGTTTTCTGGAGCCTCCCCAGAAGCTGAGAAGAAGCTGCTATGCTTCCTGTTCAGCCTGCAGAACCGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGC</dnaseq>| | sequence = <dnaseq>AGAGCCCCAGAGGCAGAGCTGCCCAAGGCTTTGGGAGCCCACCTCTTGCATCACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGACGTGCCCGTGTCCCCTTCCTCCACCACAAGATTGTAAGTTTTCTGGAGCCTCCCCAGAAGCTGAGAAGAAGCTGCTATGCTTCCTGTTCAGCCTGCAGAACCGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-GREB1-4]][[Category:NONHSAG027008]] | + | [[Category:Intergenic]][[Category:lnc-GREB1-4]][[Category:NONHSAG027008]][[Category:Transcripts]] |
Revision as of 11:44, 16 October 2014
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Contents
Annotated Information
Name
LINC00570
Characteristics
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.
Function
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).
Expression
Expressed in HeLa cells.
Conservation
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Misc
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Transcriptomic Nomeclature
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Regulation
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000437795.1 |
Source |
Gencode19 |
Same with |
lnc-GREB1-4:2,NONHSAT069165 |
Classification |
intergenic |
Length |
490 nt |
Genomic location |
chr2+:11539128..11542234 |
Exon number |
4 |
Exons |
11539128..11539344,11539798..11539900,11540498..11540583,11542151..11542234 |
Genome context |
|
Sequence |
000001 AGAGCCCCAG AGGCAGAGCT GCCCAAGGCT TTGGGAGCCC ACCTCTTGCA TCACTGTGCC CTGGATGTGA GACGTGGAAT 000080
000081 CAAGGAGATT ATTTTGGAGC TTTAAGACGT AATGGCACCC TGCTGGGTTT CAGACTTGAG TGGAGCCTGC AGCCTTTCTT 000160 000161 TCGGCCGGTT TCTCCCTTTT GGAACGGGAG TATTTACCCA ATGCCTGTAC CCCCATGACG TGCCCGTGTC CCCTTCCTCC 000240 000241 ACCACAAGAT TGTAAGTTTT CTGGAGCCTC CCCAGAAGCT GAGAAGAAGC TGCTATGCTT CCTGTTCAGC CTGCAGAACC 000320 000321 GCCACTTCCA GCATCGATGG TGTCAGGTCA GGTCCTCTGG GTAGAAGAAA TGGAGTCAGT TAGGAGTGCT GGAGACTGAG 000400 000401 TAAGAGGTGG CAGCTGAGGC TTACTACCCC AGGAAAGGGA TGCCACCAGA GAAGGCAGAC AACCAAGATG GCGACTCTCA 000480 000481 ATTTTTGAGC |