Difference between revisions of "ENST00000412242.1"
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sequence = <dnaseq>CCCCACTCCACATCTGCCTCATAGGGCTTCCTTGCCTTCCTTCATCTGGCCTTATTGAGGGCAGCCTCTTAGCTCAGCCATAGTCTTAGGTTTTGGGTCTCTGTGGTGGGATTAGGCTGGGCAGAGCTTTGGGAGAAAGGAGCAGGAGATTCAGCCTTTGCTTCTGTCCTCTAAGAGCTCCCAGACCACCTGGAGAGGTAAGCATCATAATTAGACTATATGTGGTGACATATAAACAGAGGCTAAATTGTGTGTTAGAAACTCTGAGATATAGAAGTTCAGAGGAGAGGAAAATAGCTAAGGGTAATAATCAGGGAAAATGTCAGAAATGAGACTTGAAGGATAGGAATATTAAGAAAAAAATGTTCTTTCAATTTCTGAGTTTTTGTTTTGTTTTTTTTTTTCTTTTTTAGAAAGTTTGAGGCATGAGCCACCATGCCCGGCCCTGTTTTCCATCTTTCAAGGTACTGGAATATTCAATGCCATTTTCCCAGCCTTACAGTTCTAGTCTGGGCATAAAAAACCTTCTCTAAGCACCCTGCATAGAACCACATTTTAGAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCAAGGCGGGCGGATCACAGGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATCG</dnaseq>| | sequence = <dnaseq>CCCCACTCCACATCTGCCTCATAGGGCTTCCTTGCCTTCCTTCATCTGGCCTTATTGAGGGCAGCCTCTTAGCTCAGCCATAGTCTTAGGTTTTGGGTCTCTGTGGTGGGATTAGGCTGGGCAGAGCTTTGGGAGAAAGGAGCAGGAGATTCAGCCTTTGCTTCTGTCCTCTAAGAGCTCCCAGACCACCTGGAGAGGTAAGCATCATAATTAGACTATATGTGGTGACATATAAACAGAGGCTAAATTGTGTGTTAGAAACTCTGAGATATAGAAGTTCAGAGGAGAGGAAAATAGCTAAGGGTAATAATCAGGGAAAATGTCAGAAATGAGACTTGAAGGATAGGAATATTAAGAAAAAAATGTTCTTTCAATTTCTGAGTTTTTGTTTTGTTTTTTTTTTTCTTTTTTAGAAAGTTTGAGGCATGAGCCACCATGCCCGGCCCTGTTTTCCATCTTTCAAGGTACTGGAATATTCAATGCCATTTTCCCAGCCTTACAGTTCTAGTCTGGGCATAAAAAACCTTCTCTAAGCACCCTGCATAGAACCACATTTTAGAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTGGGAGGCCAAGGCGGGCGGATCACAGGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATCG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]][[Category:lnc-IQSEC2-1]][[Category:NONHSAG054552]] | + | [[Category:Intronic(S)]][[Category:lnc-IQSEC2-1]][[Category:NONHSAG054552]][[Category:Transcripts]] |
Latest revision as of 14:47, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000412242.1 |
| Source |
Gencode19 |
| Same with |
lnc-IQSEC2-1:1,NONHSAT137170 |
| Classification |
intronic(S) |
| Length |
755 nt |
| Genomic location |
chrX-:53241590..53243861 |
| Exon number |
2 |
| Exons |
53241590..53241921,53243439..53243861 |
| Genome context |
|
| Sequence |
000001 CCCCACTCCA CATCTGCCTC ATAGGGCTTC CTTGCCTTCC TTCATCTGGC CTTATTGAGG GCAGCCTCTT AGCTCAGCCA 000080
000081 TAGTCTTAGG TTTTGGGTCT CTGTGGTGGG ATTAGGCTGG GCAGAGCTTT GGGAGAAAGG AGCAGGAGAT TCAGCCTTTG 000160 000161 CTTCTGTCCT CTAAGAGCTC CCAGACCACC TGGAGAGGTA AGCATCATAA TTAGACTATA TGTGGTGACA TATAAACAGA 000240 000241 GGCTAAATTG TGTGTTAGAA ACTCTGAGAT ATAGAAGTTC AGAGGAGAGG AAAATAGCTA AGGGTAATAA TCAGGGAAAA 000320 000321 TGTCAGAAAT GAGACTTGAA GGATAGGAAT ATTAAGAAAA AAATGTTCTT TCAATTTCTG AGTTTTTGTT TTGTTTTTTT 000400 000401 TTTTCTTTTT TAGAAAGTTT GAGGCATGAG CCACCATGCC CGGCCCTGTT TTCCATCTTT CAAGGTACTG GAATATTCAA 000480 000481 TGCCATTTTC CCAGCCTTAC AGTTCTAGTC TGGGCATAAA AAACCTTCTC TAAGCACCCT GCATAGAACC ACATTTTAGA 000560 000561 GGCCAGGCGT GGTGGCTCAC GCCTGTAATC CCAGCACTTG GGAGGCCAAG GCGGGCGGAT CACAGGGTCA GGAGTTTGAG 000640 000641 ACCAGCCTGG CCAACATGGT GAAACCCCAT CTCTACTAAA AATACAAAAA TTAGCTGGGC GTGGTGGCGG GCACCTGTAA 000720 000721 TCCCAGCTAC TCGGGAAGCT GAGGCAGGAG AATCG |
Predicted Small Protein
| Name | ENST00000412242.1_smProtein_425:532 |
| Length | 36 |
| Molecular weight | 4000.6228 |
| Aromaticity | 0.142857142857 |
| Instability index | 65.12 |
| Isoelectric point | 9.10235595703 |
| Runs | 5 |
| Runs residual | 0.0382566585956 |
| Runs probability | 0.0331390213743 |
| Amino acid sequence | MSHHARPCFPSFKVLEYSMPFSQPYSSSLGIKNLL |
| Secondary structure | LLLLLLLLLLLLLEEEELLLLLLLLLLLLLHHHLL |
| PRMN | - |
| PiMo | - |
