Difference between revisions of "ENST00000414795.1"
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sequence = <dnaseq>TTCAATCCCACCCTTCCTTACCAGATACTAAAGTCATTTCTACCTTTCCTCTTGAGATTTGCTGTTAGATATTAGAACTTCTCTTTGTCACATACTTACAGGGAGATTTTGATTATCCATGGGATTCCATTCATAACCTCATAAACCACCCCCACGAAGAAATTATATATCTCGAAGAGGTTATATGGGCACATTGTGAGATGGTGGCCTCCCATGAGCCAAGAAAAGAGGGCTTAAAATGAATCCTACCTGGCTGGCACCTTGATCTTGGACTTCCTAGCATCCAGAAATGTGACATGGTTTTCTGGTGCCTTGGCAACTGCTCACGATGCATGGGAAGACTAAACACTTTGTGTACAGCATTCTGTCTCATCCAGTGAAGACTTCCTCTGGATTATTGCAGCAGACACCTCTAACCTCCTTAATCTGTACTGAATCTTGCTCTGTCGCCAGGCTGGAGTGCAGTGGTGCGATATTGGCTCACTGCAACCTCCGCCTCTCGGGTT</dnaseq>| | sequence = <dnaseq>TTCAATCCCACCCTTCCTTACCAGATACTAAAGTCATTTCTACCTTTCCTCTTGAGATTTGCTGTTAGATATTAGAACTTCTCTTTGTCACATACTTACAGGGAGATTTTGATTATCCATGGGATTCCATTCATAACCTCATAAACCACCCCCACGAAGAAATTATATATCTCGAAGAGGTTATATGGGCACATTGTGAGATGGTGGCCTCCCATGAGCCAAGAAAAGAGGGCTTAAAATGAATCCTACCTGGCTGGCACCTTGATCTTGGACTTCCTAGCATCCAGAAATGTGACATGGTTTTCTGGTGCCTTGGCAACTGCTCACGATGCATGGGAAGACTAAACACTTTGTGTACAGCATTCTGTCTCATCCAGTGAAGACTTCCTCTGGATTATTGCAGCAGACACCTCTAACCTCCTTAATCTGTACTGAATCTTGCTCTGTCGCCAGGCTGGAGTGCAGTGGTGCGATATTGGCTCACTGCAACCTCCGCCTCTCGGGTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-CMPK2-1]][[Category:NONHSAG026902]] | + | [[Category:Intergenic]][[Category:lnc-CMPK2-1]][[Category:NONHSAG026902]][[Category:Transcripts]] |
Revision as of 14:52, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000414795.1 |
| Source |
Gencode19 |
| Same with |
lnc-CMPK2-1:1,NONHSAT068918 |
| Classification |
intergenic |
| Length |
506 nt |
| Genomic location |
chr2-:6969011..6980595 |
| Exon number |
4 |
| Exons |
6969011..6969086,6970099..6970237,6973445..6973561,6980422..6980595 |
| Genome context |
|
| Sequence |
000001 TTCAATCCCA CCCTTCCTTA CCAGATACTA AAGTCATTTC TACCTTTCCT CTTGAGATTT GCTGTTAGAT ATTAGAACTT 000080
000081 CTCTTTGTCA CATACTTACA GGGAGATTTT GATTATCCAT GGGATTCCAT TCATAACCTC ATAAACCACC CCCACGAAGA 000160 000161 AATTATATAT CTCGAAGAGG TTATATGGGC ACATTGTGAG ATGGTGGCCT CCCATGAGCC AAGAAAAGAG GGCTTAAAAT 000240 000241 GAATCCTACC TGGCTGGCAC CTTGATCTTG GACTTCCTAG CATCCAGAAA TGTGACATGG TTTTCTGGTG CCTTGGCAAC 000320 000321 TGCTCACGAT GCATGGGAAG ACTAAACACT TTGTGTACAG CATTCTGTCT CATCCAGTGA AGACTTCCTC TGGATTATTG 000400 000401 CAGCAGACAC CTCTAACCTC CTTAATCTGT ACTGAATCTT GCTCTGTCGC CAGGCTGGAG TGCAGTGGTG CGATATTGGC 000480 000481 TCACTGCAAC CTCCGCCTCT CGGGTT |
Predicted Small Protein
| Name | ENST00000414795.1_smProtein_296:379 |
| Length | 28 |
| Molecular weight | 3084.7697 |
| Aromaticity | 0.111111111111 |
| Instability index | 47.8222222222 |
| Isoelectric point | 8.41741943359 |
| Runs | 5 |
| Runs residual | 0.0214707461084 |
| Runs probability | 0.0334393216747 |
| Amino acid sequence | MVFWCLGNCSRCMGRLNTLCTAFCLIQ |
| Secondary structure | LEEEELLLLLHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
