Difference between revisions of "ENST00000417926.1"

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sequence = <dnaseq>AGGAAACACATTTCTACTGTTTAAGCCACTTGGCTGGGAGTACTTGGTTATGGCAGCCTGAGCAGACTAAACCAGCACCTCAAAGAGTTGTTATAGGGTATGCTTAGTGGTAACTGGTTCCTAAAGGCCTTGCTTTCTAAGGCTGACTCCTCACCCTGCAAGGATGCATTCTCCCCACTGGCAGATATGCAACCAGGAACAGGCATTAACACGCTTTATTCCCAGAGTTTTAATATTTTCCATTGCATAAAATATTTGTTCATGAAAATGACAAAATTGCTATTAGATTCTATCACCACATCTCTGTTGATTTTACTTTCTGCAAACACATACAAGTAATGTAGGCATACAGTTAAAAATGAAACCTTATCCTGTAGTTCCAGCTACTAGGGAGGCTGAAGCAAGAGAATGGCATGAACCTGGGAGGCGGAGCTTGTCGTGAGCCCAGATCAGGCCACTACACTCCAGCCGGGGCAACAGAGCGCAACTCCGTCTCAAAACAAACAAACAAAACAAAACAAAAAAAACTTATAGACAAGTACAAAATGAGAAGAAAAAGTCCCTTTCCCTTCATGCCTCTACTTCCTGCTGTATTCTCAAAGGTAAGCACTGATTACAGTTTACTTATGGATCTTTCCAGGAAAATATTTTATGCATTTATCAGAAAATGTAAGTATATGCATCCTTTAAAATTCTGCATAAATCAAACTCTGCAGGGTACTATCTTCCCATCCTCATTTGATATTTTGTAGATCTTTTCCTATTGGCTGTACAGATCACCTCATTCTGTCTCCTGGGTCATACAATATAGCTCACATAATTCTAAGTCTGAAGGTTGGTCCAAATGGTTCCAAGAATGCAGGTACCAAAAAGTAGTCTCTTGAAGAGGCCATCAGAGACCTGGCTGTTTGTATCTTCCTCCTCTGCCATCCACAGTGTCATCTTCACCCAAGGTGGCTGGAGAAGCTGTTAGGAATATGTGGTTTTTTAAAAATTACATTCATAGGAAAAGGGGAGGGAAGAGAAGAAGAAAACCTCTCCCCCTAAGCTCATGGCTCTTTTTAGTCAGGCTGAGCCAACTAAAGTCATGTACTTCCCTTAGATAGGTAACTGTTGCCAGGAAAATGCCCTGTGTGGATTGGCCTGGACTAAGCAGGATCCTCCTCTAAAGAGAGAGATGAGATGAATGCCTGACCCAAGTCTGGGATCTTGGGTGGGAAGCGTGTGGATAGTAGGTCAGAGGTCAGCAGTGTCTGTGGTGTAGGATGTAATCCCATCTCCACAGAGCTGCATACAAGTGTGTTTAAGTGTGTGCAAGTGATTAACTTTGATTAGTAGTTTCAACTCTTTACAATGAACATATTTATCTTTTTTAAAAAATAAAGCCATTTTAAAAGATCTTGCCATAAAACAATCATTCCTTAAGTCACCACTTAGGATAGACCTAGAATATTTGTCCTTTCTCAAGAGCACCAGAGAGTTTTCTGGTAATCCACGCAATAAACAGTTATAAAAGGTAATTGTTGAGATCAGGGGAAGATGGCAGATAGGAGGCAGTGCTAATGTGTAGCTCCCACATGGATGGACAAAACACCATGTGGAGACTCACACTGTGACCCTGTTGTGCTCCAAGAACTATCATAGGAACATACTGGGAAAACCAAAAGAATTCACGGATCCTTTGAAAGAAGACGCACACCACTGTAAATTCTGTGGAACAGGAGAAAAACTGTCTTGGAGGAAGGCATCCTTCTATTCTACTGATCAGAAAGCTGGACAAAGTCCCACTGCCAGGCTACACAGTTGGTGCCATTTGCGGAGGTGACCTTTGACCTTTAACCCACGCGGCCACCCGCCCGAGCTCTTACCCCTGCTGCCCCTCGCGCGTCCCACTCCCCGTCCCTGCCGGATCCGCTTCCCTGCGCTGGGCCCAGCGCGCCGCCAGGGAAGGGGCCGGAGCCTGGGAGCCCGCCCCGCCGTCGCCCGTCCTCCGCCCGCAGGCCCACCCGCAGCGGTCACGTGAAGGACCGAGCGCCGCGCGCCCAGGCGGGGCCTCCGGCCTGCACGAGGAGGGCAGAGTCCGTTGCGGCTGCCGCCCCGACGCCCGCGCATCCCCGCTCGCCGCGCCCGCCGCCGCGATGTCCGGGGCCGGCCTAGCCGCGGTGGTGAGCTGCCTGCGCCCGCAGCCCGGCGAGGAGCCGCAGACCCATGAGGACCTTCTCCTGGCAGCTGCCTATGTTTTGGATGCCCAGTACAACAGAAATGTTCCATTTGAAACTCACCTCAGGCCATCAGACGTTACTATTTTTATAACCACTAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGACCTCGCTCTTGCCCTGTTTGAAGAGCCTGAGTTGCTTCCCCTGCCTTTCTTGGCCACCTCAATAGCAGAAGTACTCTGCCTGACTGCATACTTTGGCAGACTGGTACATTTTGCAAAAGTCACTCCTCAAATGGTTTTCTGGAAGGATACAAAAGACATCTGCACCATGGTAACCACAGTGGCGAGTGTTCATTGTAGTACCTGTAAGAGTTTATGACCGAAGGCAGGAGCCATGAAGAAAAAAGACTCAATAGATTTGCTTTTGATGAAACAACAACACTTCCATACAGTGAACGCCATAAGCACAACTGCAAGCAAACCGCAAACTGAAGAACAAATAGGGCAAAATGTGGCAGTGCAGACATTTCAGCATATCAAGAGCACTTCCAAATTACAGGAAAAAAAAGATATCTCAATAGATAATTTTGCTGAAGATAAGTGAAGGCAACTCATAAGGAAAAAATATGTAAAATGGCCGATAGGAAAGATGTTTAACGTCACTAATTAAAAATTATAGAATAAAACGACAATAAAATACCATGTGTTTGCCTATAAAACAA</dnaseq>|
 
sequence = <dnaseq>AGGAAACACATTTCTACTGTTTAAGCCACTTGGCTGGGAGTACTTGGTTATGGCAGCCTGAGCAGACTAAACCAGCACCTCAAAGAGTTGTTATAGGGTATGCTTAGTGGTAACTGGTTCCTAAAGGCCTTGCTTTCTAAGGCTGACTCCTCACCCTGCAAGGATGCATTCTCCCCACTGGCAGATATGCAACCAGGAACAGGCATTAACACGCTTTATTCCCAGAGTTTTAATATTTTCCATTGCATAAAATATTTGTTCATGAAAATGACAAAATTGCTATTAGATTCTATCACCACATCTCTGTTGATTTTACTTTCTGCAAACACATACAAGTAATGTAGGCATACAGTTAAAAATGAAACCTTATCCTGTAGTTCCAGCTACTAGGGAGGCTGAAGCAAGAGAATGGCATGAACCTGGGAGGCGGAGCTTGTCGTGAGCCCAGATCAGGCCACTACACTCCAGCCGGGGCAACAGAGCGCAACTCCGTCTCAAAACAAACAAACAAAACAAAACAAAAAAAACTTATAGACAAGTACAAAATGAGAAGAAAAAGTCCCTTTCCCTTCATGCCTCTACTTCCTGCTGTATTCTCAAAGGTAAGCACTGATTACAGTTTACTTATGGATCTTTCCAGGAAAATATTTTATGCATTTATCAGAAAATGTAAGTATATGCATCCTTTAAAATTCTGCATAAATCAAACTCTGCAGGGTACTATCTTCCCATCCTCATTTGATATTTTGTAGATCTTTTCCTATTGGCTGTACAGATCACCTCATTCTGTCTCCTGGGTCATACAATATAGCTCACATAATTCTAAGTCTGAAGGTTGGTCCAAATGGTTCCAAGAATGCAGGTACCAAAAAGTAGTCTCTTGAAGAGGCCATCAGAGACCTGGCTGTTTGTATCTTCCTCCTCTGCCATCCACAGTGTCATCTTCACCCAAGGTGGCTGGAGAAGCTGTTAGGAATATGTGGTTTTTTAAAAATTACATTCATAGGAAAAGGGGAGGGAAGAGAAGAAGAAAACCTCTCCCCCTAAGCTCATGGCTCTTTTTAGTCAGGCTGAGCCAACTAAAGTCATGTACTTCCCTTAGATAGGTAACTGTTGCCAGGAAAATGCCCTGTGTGGATTGGCCTGGACTAAGCAGGATCCTCCTCTAAAGAGAGAGATGAGATGAATGCCTGACCCAAGTCTGGGATCTTGGGTGGGAAGCGTGTGGATAGTAGGTCAGAGGTCAGCAGTGTCTGTGGTGTAGGATGTAATCCCATCTCCACAGAGCTGCATACAAGTGTGTTTAAGTGTGTGCAAGTGATTAACTTTGATTAGTAGTTTCAACTCTTTACAATGAACATATTTATCTTTTTTAAAAAATAAAGCCATTTTAAAAGATCTTGCCATAAAACAATCATTCCTTAAGTCACCACTTAGGATAGACCTAGAATATTTGTCCTTTCTCAAGAGCACCAGAGAGTTTTCTGGTAATCCACGCAATAAACAGTTATAAAAGGTAATTGTTGAGATCAGGGGAAGATGGCAGATAGGAGGCAGTGCTAATGTGTAGCTCCCACATGGATGGACAAAACACCATGTGGAGACTCACACTGTGACCCTGTTGTGCTCCAAGAACTATCATAGGAACATACTGGGAAAACCAAAAGAATTCACGGATCCTTTGAAAGAAGACGCACACCACTGTAAATTCTGTGGAACAGGAGAAAAACTGTCTTGGAGGAAGGCATCCTTCTATTCTACTGATCAGAAAGCTGGACAAAGTCCCACTGCCAGGCTACACAGTTGGTGCCATTTGCGGAGGTGACCTTTGACCTTTAACCCACGCGGCCACCCGCCCGAGCTCTTACCCCTGCTGCCCCTCGCGCGTCCCACTCCCCGTCCCTGCCGGATCCGCTTCCCTGCGCTGGGCCCAGCGCGCCGCCAGGGAAGGGGCCGGAGCCTGGGAGCCCGCCCCGCCGTCGCCCGTCCTCCGCCCGCAGGCCCACCCGCAGCGGTCACGTGAAGGACCGAGCGCCGCGCGCCCAGGCGGGGCCTCCGGCCTGCACGAGGAGGGCAGAGTCCGTTGCGGCTGCCGCCCCGACGCCCGCGCATCCCCGCTCGCCGCGCCCGCCGCCGCGATGTCCGGGGCCGGCCTAGCCGCGGTGGTGAGCTGCCTGCGCCCGCAGCCCGGCGAGGAGCCGCAGACCCATGAGGACCTTCTCCTGGCAGCTGCCTATGTTTTGGATGCCCAGTACAACAGAAATGTTCCATTTGAAACTCACCTCAGGCCATCAGACGTTACTATTTTTATAACCACTAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGACCTCGCTCTTGCCCTGTTTGAAGAGCCTGAGTTGCTTCCCCTGCCTTTCTTGGCCACCTCAATAGCAGAAGTACTCTGCCTGACTGCATACTTTGGCAGACTGGTACATTTTGCAAAAGTCACTCCTCAAATGGTTTTCTGGAAGGATACAAAAGACATCTGCACCATGGTAACCACAGTGGCGAGTGTTCATTGTAGTACCTGTAAGAGTTTATGACCGAAGGCAGGAGCCATGAAGAAAAAAGACTCAATAGATTTGCTTTTGATGAAACAACAACACTTCCATACAGTGAACGCCATAAGCACAACTGCAAGCAAACCGCAAACTGAAGAACAAATAGGGCAAAATGTGGCAGTGCAGACATTTCAGCATATCAAGAGCACTTCCAAATTACAGGAAAAAAAAGATATCTCAATAGATAATTTTGCTGAAGATAAGTGAAGGCAACTCATAAGGAAAAAATATGTAAAATGGCCGATAGGAAAGATGTTTAACGTCACTAATTAAAAATTATAGAATAAAACGACAATAAAATACCATGTGTTTGCCTATAAAACAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-LIMS3.1-1]][[Category:NONHSAG028906]][[Category:ENSG00000186148.7]][[Category:Transcripts]]
+
[[Category:Intergenic]][[Category:lnc-LIMS3.1-1]][[Category:NONHSAG028906]][[Category:ENSG00000186148.7]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 14:58, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000417926.1

Source

Gencode19

Same with

lnc-LIMS3.1-1:1,NONHSAT073155

Classification

intergenic

Length

2918 nt

Genomic location

chr2+:110693919..110726154

Exon number

5

Exons

110693919..110695649,110704941..110705422,110721046..110721127,110722265..110722379,110725647..110726154

Genome context

Sequence
000001 AGGAAACACA TTTCTACTGT TTAAGCCACT TGGCTGGGAG TACTTGGTTA TGGCAGCCTG AGCAGACTAA ACCAGCACCT 000080
000081 CAAAGAGTTG TTATAGGGTA TGCTTAGTGG TAACTGGTTC CTAAAGGCCT TGCTTTCTAA GGCTGACTCC TCACCCTGCA 000160
000161 AGGATGCATT CTCCCCACTG GCAGATATGC AACCAGGAAC AGGCATTAAC ACGCTTTATT CCCAGAGTTT TAATATTTTC 000240
000241 CATTGCATAA AATATTTGTT CATGAAAATG ACAAAATTGC TATTAGATTC TATCACCACA TCTCTGTTGA TTTTACTTTC 000320
000321 TGCAAACACA TACAAGTAAT GTAGGCATAC AGTTAAAAAT GAAACCTTAT CCTGTAGTTC CAGCTACTAG GGAGGCTGAA 000400
000401 GCAAGAGAAT GGCATGAACC TGGGAGGCGG AGCTTGTCGT GAGCCCAGAT CAGGCCACTA CACTCCAGCC GGGGCAACAG 000480
000481 AGCGCAACTC CGTCTCAAAA CAAACAAACA AAACAAAACA AAAAAAACTT ATAGACAAGT ACAAAATGAG AAGAAAAAGT 000560
000561 CCCTTTCCCT TCATGCCTCT ACTTCCTGCT GTATTCTCAA AGGTAAGCAC TGATTACAGT TTACTTATGG ATCTTTCCAG 000640
000641 GAAAATATTT TATGCATTTA TCAGAAAATG TAAGTATATG CATCCTTTAA AATTCTGCAT AAATCAAACT CTGCAGGGTA 000720
000721 CTATCTTCCC ATCCTCATTT GATATTTTGT AGATCTTTTC CTATTGGCTG TACAGATCAC CTCATTCTGT CTCCTGGGTC 000800
000801 ATACAATATA GCTCACATAA TTCTAAGTCT GAAGGTTGGT CCAAATGGTT CCAAGAATGC AGGTACCAAA AAGTAGTCTC 000880
000881 TTGAAGAGGC CATCAGAGAC CTGGCTGTTT GTATCTTCCT CCTCTGCCAT CCACAGTGTC ATCTTCACCC AAGGTGGCTG 000960
000961 GAGAAGCTGT TAGGAATATG TGGTTTTTTA AAAATTACAT TCATAGGAAA AGGGGAGGGA AGAGAAGAAG AAAACCTCTC 001040
001041 CCCCTAAGCT CATGGCTCTT TTTAGTCAGG CTGAGCCAAC TAAAGTCATG TACTTCCCTT AGATAGGTAA CTGTTGCCAG 001120
001121 GAAAATGCCC TGTGTGGATT GGCCTGGACT AAGCAGGATC CTCCTCTAAA GAGAGAGATG AGATGAATGC CTGACCCAAG 001200
001201 TCTGGGATCT TGGGTGGGAA GCGTGTGGAT AGTAGGTCAG AGGTCAGCAG TGTCTGTGGT GTAGGATGTA ATCCCATCTC 001280
001281 CACAGAGCTG CATACAAGTG TGTTTAAGTG TGTGCAAGTG ATTAACTTTG ATTAGTAGTT TCAACTCTTT ACAATGAACA 001360
001361 TATTTATCTT TTTTAAAAAA TAAAGCCATT TTAAAAGATC TTGCCATAAA ACAATCATTC CTTAAGTCAC CACTTAGGAT 001440
001441 AGACCTAGAA TATTTGTCCT TTCTCAAGAG CACCAGAGAG TTTTCTGGTA ATCCACGCAA TAAACAGTTA TAAAAGGTAA 001520
001521 TTGTTGAGAT CAGGGGAAGA TGGCAGATAG GAGGCAGTGC TAATGTGTAG CTCCCACATG GATGGACAAA ACACCATGTG 001600
001601 GAGACTCACA CTGTGACCCT GTTGTGCTCC AAGAACTATC ATAGGAACAT ACTGGGAAAA CCAAAAGAAT TCACGGATCC 001680
001681 TTTGAAAGAA GACGCACACC ACTGTAAATT CTGTGGAACA GGAGAAAAAC TGTCTTGGAG GAAGGCATCC TTCTATTCTA 001760
001761 CTGATCAGAA AGCTGGACAA AGTCCCACTG CCAGGCTACA CAGTTGGTGC CATTTGCGGA GGTGACCTTT GACCTTTAAC 001840
001841 CCACGCGGCC ACCCGCCCGA GCTCTTACCC CTGCTGCCCC TCGCGCGTCC CACTCCCCGT CCCTGCCGGA TCCGCTTCCC 001920
001921 TGCGCTGGGC CCAGCGCGCC GCCAGGGAAG GGGCCGGAGC CTGGGAGCCC GCCCCGCCGT CGCCCGTCCT CCGCCCGCAG 002000
002001 GCCCACCCGC AGCGGTCACG TGAAGGACCG AGCGCCGCGC GCCCAGGCGG GGCCTCCGGC CTGCACGAGG AGGGCAGAGT 002080
002081 CCGTTGCGGC TGCCGCCCCG ACGCCCGCGC ATCCCCGCTC GCCGCGCCCG CCGCCGCGAT GTCCGGGGCC GGCCTAGCCG 002160
002161 CGGTGGTGAG CTGCCTGCGC CCGCAGCCCG GCGAGGAGCC GCAGACCCAT GAGGACCTTC TCCTGGCAGC TGCCTATGTT 002240
002241 TTGGATGCCC AGTACAACAG AAATGTTCCA TTTGAAACTC ACCTCAGGCC ATCAGACGTT ACTATTTTTA TAACCACTAG 002320
002321 ACAACGCAGG TTGCCGCATA CTTCTTTATT TGTGTAGACC TCGCTCTTGC CCTGTTTGAA GAGCCTGAGT TGCTTCCCCT 002400
002401 GCCTTTCTTG GCCACCTCAA TAGCAGAAGT ACTCTGCCTG ACTGCATACT TTGGCAGACT GGTACATTTT GCAAAAGTCA 002480
002481 CTCCTCAAAT GGTTTTCTGG AAGGATACAA AAGACATCTG CACCATGGTA ACCACAGTGG CGAGTGTTCA TTGTAGTACC 002560
002561 TGTAAGAGTT TATGACCGAA GGCAGGAGCC ATGAAGAAAA AAGACTCAAT AGATTTGCTT TTGATGAAAC AACAACACTT 002640
002641 CCATACAGTG AACGCCATAA GCACAACTGC AAGCAAACCG CAAACTGAAG AACAAATAGG GCAAAATGTG GCAGTGCAGA 002720
002721 CATTTCAGCA TATCAAGAGC ACTTCCAAAT TACAGGAAAA AAAAGATATC TCAATAGATA ATTTTGCTGA AGATAAGTGA 002800
002801 AGGCAACTCA TAAGGAAAAA ATATGTAAAA TGGCCGATAG GAAAGATGTT TAACGTCACT AATTAAAAAT TATAGAATAA 002880
002881 AACGACAATA AAATACCATG TGTTTGCCTA TAAAACAA
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