Difference between revisions of "ENST00000421202.1"
| Line 42: | Line 42: | ||
sequence = <dnaseq>CCGCCCGTTCGCGCTGCCAGCAGCTTCCGCCTGCTACGGTCCTGGCAAGCACCTCGGGATCCCATTCCTTCACAGGGACCCTAGCCAGTTAAAGCTGATACATTCCTGTGGGTCAACTATGCAACTAACTCAGATTTTGAGCAAACAAAGCTCTCAAGTTGGTGATCCTCAGGAGTCTCTGCATTAGTTGGACAGCTCTTCTGGAATTATCTTCTAAGTCAACTGTGGGTTGGGTAGGTGGCTCTGCTGATTTTTCGCTGGACTTCCACATTTGGGACGAGTTGGCTGTCATCAGCTCTAGAAAGGGTGTGGCCGTTTTACATTGGCTGTTTTCCTCACATTCCTCAAGCAGGTACTGTAATAAAGAACTGGAGAAATACAGTCAGATGGGAAGTAGCCCTTGCTGTCAAGGAGCTTGCCATCTAATGGGGGAGACAGGCAAGTAAACCAAAGACTACACAGTGCAGTATGGTAAGTGCCATGATTTTGATGTGACAGGGCACAGTGGACGACCTTCCAAATCAAAGCAAGTAACTAGGGGTTGACAATGGTAAGTATCATAGTTGAAGTATCCTTGAACAAGGTTTCAGGAAGAAGAAGAAGGGAATTTCATGCAGGGAAACAGCCAAAGCTCAGTGAGTCAAAATATCACAGCATTCTTGGTAAGCCCAATTGTTTTTTCTGTTTTGCTATTTTGGTGGAGAGAAAGGAACACATAAAGGAATAACATGAGAGAAGGCTATTTGGGGAAGTGTAGTAGTTAAGGTTCTGGCTCAAACAACAACTGCAGCTCATAAAGTTGACTTTAGTGGAAGGATACTGGGGTATCTCATGGAATCTTGGGAACTGTTGAATAACCAGGGAAACTCTGGGAAACTCACTGGTAGGAATCCATAAACTGTCCTCCTGGTGGGCTGTAAACAACTCACCCTCTATGCATCTCACATCAAAATTCCAGTTTCTTGGGAAAACAAGTCTGTTTGCCCAATTTGGGTCATATTTCCACGTCCATGTTACTCAGGCATGATTCATCTGCAAGTTATGTGTATAGATATTTTGCTACTGTTCCACCCTTACGCTGTGCTGGGGAGGGAGGTGTCACTGTGAGCTGTGTCGGTGCCTTAAGAGATATCTGTTGTGTCTTATTACTTGGTTGCTTTTCCCCACATGTACAATGACAAAAATGCCTTCAACCTATTTGATCCAGCCGTTCCAGTACAACTCCTATACTTGCCATCTTTCCAAGCCCAAAGGTACATCCAGCTGATGGAAGGAGCATCTTGGTGTTAATATTCTTTTAGTCATGGTCTCTGAAAGTAAAATGTCTATTCTTCTAATTCTGGCACAATCTTATCTAGCTATAGTTCCTCATGGTCCTGCACTCCATGGACTAAATTGTAAGTATAATTACTACCAATGTACTCTATAAATAACTTTTGGGGCCAGGGTGGCAATAGTTGCTAGAGAGAAAAAAAAAAAAAAGGAAGGAGAAGAAAACAGTGATAGTTCTTATTTTAAAAGGAAAAAAAGAGGCAGGAGGCTCTCTTGAGGCCAGGAGTTTAAGACCAGCCTAGGCAGCATTTCAAGACCCTGTCTCTACTAAAAAGTAAAAAAAAAATTTAGTCAGGCATGGTGGCATGCACCTGTAGTCGTAGCTACTCAGGAGACTGAGGTGGGAGGATTGATTGAGCTCAGGAGTTTGAGGCTGCAGTGAGCAATCATCATGCCATTGCACTCCAGCCTGGGCATCAGAGCAAGACCTTGTCTTTTAGGAAAAAAAGGCAGGGAAGAGGAATAGGTAATTTTTCAGTGTTCAGACATTCCAGCAATATGTGTGGAGTACTCATTCTCACTACAGTTTATGAGGCCATAGCTAGTATGTATGACTACCCATCCAAGTTTCCCTGCTTACAGTTACTATTCCAACTGATTGGGGGGCTTTTCCTAATAGAGTGATTTAAGCCTTCATTTTTAGACATCTAAGCCCTTGGTGATCATCAGCATAAAATGTGACAAATTAAACAAAAGCAAGACAGCACATCAGAGAACAACTCTGAGGTGGAATGATTGGGAACCAATGAATAGTTGTTCAGTAAATGGTTTATATTTTACAGATGATGAAACTGAAACACAAAAAATTTAGATTAACTCTTAGGTGACAAAGCCAGGATTGAAGCTCATGCGGTCTGGCTCCAGAACAACTCTTCTTCATAGTTACGTTATACTGCCCCTGCATTGTTGGTATTGAAAAATTTCCTTTCATCTCTGGTAAAAGTCAGCTCTCTAACTACTGCATCTCACAGCTGAACAGATAACTGATACCGTGCTTCCAGAAGATTTTTCTAACAGTGTTTGCAAGCTATAAAATAGTGCTTTCACTTAGAAAAGGCTAGACGTGGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCACCATGCTGGGAGATAAGGATCCAACATAAGACAAACAGTGCTGATGCTTTTGGAAAGCTCATATTCAAGCTGGGGAGACAAACAACATACAAGTGGCTGTAGCTACCTTCTGCATATGGATATCCAGTTTTCCCAGCACCACTTATTAAAGAGACTGTCTTTTCTGCAGTGTATATTCTTGGCACCGTTGTTGAAAATGAATTCATTGTAGGTGTGTGGGTTTGTTTCTGGGTTCTCTATTCTGTTCAACTTGTCTATGTGTCTGTTTTTATGCCAGTACCGTGTCATTTTAGTTACCAGAGCTCTGCAGTATAATTTGAAACCAGGTCATGTGATTCCTCCAGTTTTGTGGTATTAGGATAGGTTTGGCTATTCTGAGTCTTTTGTGGTTCCATATAAATTTTAGAATTTTTTTTTTCTATTTCTGTGAAGAATGTCATTGGTATTTTGATAGGGATTGCGTTGAATCTGTAGATTGCTTTGGGTAGTATGGACATTTTAACAATATTCATTCTTCTAATCCATGAACATG</dnaseq>| | sequence = <dnaseq>CCGCCCGTTCGCGCTGCCAGCAGCTTCCGCCTGCTACGGTCCTGGCAAGCACCTCGGGATCCCATTCCTTCACAGGGACCCTAGCCAGTTAAAGCTGATACATTCCTGTGGGTCAACTATGCAACTAACTCAGATTTTGAGCAAACAAAGCTCTCAAGTTGGTGATCCTCAGGAGTCTCTGCATTAGTTGGACAGCTCTTCTGGAATTATCTTCTAAGTCAACTGTGGGTTGGGTAGGTGGCTCTGCTGATTTTTCGCTGGACTTCCACATTTGGGACGAGTTGGCTGTCATCAGCTCTAGAAAGGGTGTGGCCGTTTTACATTGGCTGTTTTCCTCACATTCCTCAAGCAGGTACTGTAATAAAGAACTGGAGAAATACAGTCAGATGGGAAGTAGCCCTTGCTGTCAAGGAGCTTGCCATCTAATGGGGGAGACAGGCAAGTAAACCAAAGACTACACAGTGCAGTATGGTAAGTGCCATGATTTTGATGTGACAGGGCACAGTGGACGACCTTCCAAATCAAAGCAAGTAACTAGGGGTTGACAATGGTAAGTATCATAGTTGAAGTATCCTTGAACAAGGTTTCAGGAAGAAGAAGAAGGGAATTTCATGCAGGGAAACAGCCAAAGCTCAGTGAGTCAAAATATCACAGCATTCTTGGTAAGCCCAATTGTTTTTTCTGTTTTGCTATTTTGGTGGAGAGAAAGGAACACATAAAGGAATAACATGAGAGAAGGCTATTTGGGGAAGTGTAGTAGTTAAGGTTCTGGCTCAAACAACAACTGCAGCTCATAAAGTTGACTTTAGTGGAAGGATACTGGGGTATCTCATGGAATCTTGGGAACTGTTGAATAACCAGGGAAACTCTGGGAAACTCACTGGTAGGAATCCATAAACTGTCCTCCTGGTGGGCTGTAAACAACTCACCCTCTATGCATCTCACATCAAAATTCCAGTTTCTTGGGAAAACAAGTCTGTTTGCCCAATTTGGGTCATATTTCCACGTCCATGTTACTCAGGCATGATTCATCTGCAAGTTATGTGTATAGATATTTTGCTACTGTTCCACCCTTACGCTGTGCTGGGGAGGGAGGTGTCACTGTGAGCTGTGTCGGTGCCTTAAGAGATATCTGTTGTGTCTTATTACTTGGTTGCTTTTCCCCACATGTACAATGACAAAAATGCCTTCAACCTATTTGATCCAGCCGTTCCAGTACAACTCCTATACTTGCCATCTTTCCAAGCCCAAAGGTACATCCAGCTGATGGAAGGAGCATCTTGGTGTTAATATTCTTTTAGTCATGGTCTCTGAAAGTAAAATGTCTATTCTTCTAATTCTGGCACAATCTTATCTAGCTATAGTTCCTCATGGTCCTGCACTCCATGGACTAAATTGTAAGTATAATTACTACCAATGTACTCTATAAATAACTTTTGGGGCCAGGGTGGCAATAGTTGCTAGAGAGAAAAAAAAAAAAAAGGAAGGAGAAGAAAACAGTGATAGTTCTTATTTTAAAAGGAAAAAAAGAGGCAGGAGGCTCTCTTGAGGCCAGGAGTTTAAGACCAGCCTAGGCAGCATTTCAAGACCCTGTCTCTACTAAAAAGTAAAAAAAAAATTTAGTCAGGCATGGTGGCATGCACCTGTAGTCGTAGCTACTCAGGAGACTGAGGTGGGAGGATTGATTGAGCTCAGGAGTTTGAGGCTGCAGTGAGCAATCATCATGCCATTGCACTCCAGCCTGGGCATCAGAGCAAGACCTTGTCTTTTAGGAAAAAAAGGCAGGGAAGAGGAATAGGTAATTTTTCAGTGTTCAGACATTCCAGCAATATGTGTGGAGTACTCATTCTCACTACAGTTTATGAGGCCATAGCTAGTATGTATGACTACCCATCCAAGTTTCCCTGCTTACAGTTACTATTCCAACTGATTGGGGGGCTTTTCCTAATAGAGTGATTTAAGCCTTCATTTTTAGACATCTAAGCCCTTGGTGATCATCAGCATAAAATGTGACAAATTAAACAAAAGCAAGACAGCACATCAGAGAACAACTCTGAGGTGGAATGATTGGGAACCAATGAATAGTTGTTCAGTAAATGGTTTATATTTTACAGATGATGAAACTGAAACACAAAAAATTTAGATTAACTCTTAGGTGACAAAGCCAGGATTGAAGCTCATGCGGTCTGGCTCCAGAACAACTCTTCTTCATAGTTACGTTATACTGCCCCTGCATTGTTGGTATTGAAAAATTTCCTTTCATCTCTGGTAAAAGTCAGCTCTCTAACTACTGCATCTCACAGCTGAACAGATAACTGATACCGTGCTTCCAGAAGATTTTTCTAACAGTGTTTGCAAGCTATAAAATAGTGCTTTCACTTAGAAAAGGCTAGACGTGGTGGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCACCATGCTGGGAGATAAGGATCCAACATAAGACAAACAGTGCTGATGCTTTTGGAAAGCTCATATTCAAGCTGGGGAGACAAACAACATACAAGTGGCTGTAGCTACCTTCTGCATATGGATATCCAGTTTTCCCAGCACCACTTATTAAAGAGACTGTCTTTTCTGCAGTGTATATTCTTGGCACCGTTGTTGAAAATGAATTCATTGTAGGTGTGTGGGTTTGTTTCTGGGTTCTCTATTCTGTTCAACTTGTCTATGTGTCTGTTTTTATGCCAGTACCGTGTCATTTTAGTTACCAGAGCTCTGCAGTATAATTTGAAACCAGGTCATGTGATTCCTCCAGTTTTGTGGTATTAGGATAGGTTTGGCTATTCTGAGTCTTTTGTGGTTCCATATAAATTTTAGAATTTTTTTTTTCTATTTCTGTGAAGAATGTCATTGGTATTTTGATAGGGATTGCGTTGAATCTGTAGATTGCTTTGGGTAGTATGGACATTTTAACAATATTCATTCTTCTAATCCATGAACATG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000223745.3]][[Category:lnc-TMED5-1]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:ENSG00000223745.3]][[Category:lnc-TMED5-1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 15:05, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000421202.1 |
| Source |
Gencode19 |
| Same with |
lnc-TMED5-1:6 |
| Classification |
intergenic |
| Length |
2973 nt |
| Genomic location |
chr1-:93776726..93811368 |
| Exon number |
9 |
| Exons |
93776726..93777165,93790192..93790286,93791326..93791452,93792159..93792219,93802934..93804831,93804914..93805093,93805206..93805236,93806015..93806067,93811281..93811368 |
| Genome context |
|
| Sequence |
000001 CCGCCCGTTC GCGCTGCCAG CAGCTTCCGC CTGCTACGGT CCTGGCAAGC ACCTCGGGAT CCCATTCCTT CACAGGGACC 000080
000081 CTAGCCAGTT AAAGCTGATA CATTCCTGTG GGTCAACTAT GCAACTAACT CAGATTTTGA GCAAACAAAG CTCTCAAGTT 000160 000161 GGTGATCCTC AGGAGTCTCT GCATTAGTTG GACAGCTCTT CTGGAATTAT CTTCTAAGTC AACTGTGGGT TGGGTAGGTG 000240 000241 GCTCTGCTGA TTTTTCGCTG GACTTCCACA TTTGGGACGA GTTGGCTGTC ATCAGCTCTA GAAAGGGTGT GGCCGTTTTA 000320 000321 CATTGGCTGT TTTCCTCACA TTCCTCAAGC AGGTACTGTA ATAAAGAACT GGAGAAATAC AGTCAGATGG GAAGTAGCCC 000400 000401 TTGCTGTCAA GGAGCTTGCC ATCTAATGGG GGAGACAGGC AAGTAAACCA AAGACTACAC AGTGCAGTAT GGTAAGTGCC 000480 000481 ATGATTTTGA TGTGACAGGG CACAGTGGAC GACCTTCCAA ATCAAAGCAA GTAACTAGGG GTTGACAATG GTAAGTATCA 000560 000561 TAGTTGAAGT ATCCTTGAAC AAGGTTTCAG GAAGAAGAAG AAGGGAATTT CATGCAGGGA AACAGCCAAA GCTCAGTGAG 000640 000641 TCAAAATATC ACAGCATTCT TGGTAAGCCC AATTGTTTTT TCTGTTTTGC TATTTTGGTG GAGAGAAAGG AACACATAAA 000720 000721 GGAATAACAT GAGAGAAGGC TATTTGGGGA AGTGTAGTAG TTAAGGTTCT GGCTCAAACA ACAACTGCAG CTCATAAAGT 000800 000801 TGACTTTAGT GGAAGGATAC TGGGGTATCT CATGGAATCT TGGGAACTGT TGAATAACCA GGGAAACTCT GGGAAACTCA 000880 000881 CTGGTAGGAA TCCATAAACT GTCCTCCTGG TGGGCTGTAA ACAACTCACC CTCTATGCAT CTCACATCAA AATTCCAGTT 000960 000961 TCTTGGGAAA ACAAGTCTGT TTGCCCAATT TGGGTCATAT TTCCACGTCC ATGTTACTCA GGCATGATTC ATCTGCAAGT 001040 001041 TATGTGTATA GATATTTTGC TACTGTTCCA CCCTTACGCT GTGCTGGGGA GGGAGGTGTC ACTGTGAGCT GTGTCGGTGC 001120 001121 CTTAAGAGAT ATCTGTTGTG TCTTATTACT TGGTTGCTTT TCCCCACATG TACAATGACA AAAATGCCTT CAACCTATTT 001200 001201 GATCCAGCCG TTCCAGTACA ACTCCTATAC TTGCCATCTT TCCAAGCCCA AAGGTACATC CAGCTGATGG AAGGAGCATC 001280 001281 TTGGTGTTAA TATTCTTTTA GTCATGGTCT CTGAAAGTAA AATGTCTATT CTTCTAATTC TGGCACAATC TTATCTAGCT 001360 001361 ATAGTTCCTC ATGGTCCTGC ACTCCATGGA CTAAATTGTA AGTATAATTA CTACCAATGT ACTCTATAAA TAACTTTTGG 001440 001441 GGCCAGGGTG GCAATAGTTG CTAGAGAGAA AAAAAAAAAA AAGGAAGGAG AAGAAAACAG TGATAGTTCT TATTTTAAAA 001520 001521 GGAAAAAAAG AGGCAGGAGG CTCTCTTGAG GCCAGGAGTT TAAGACCAGC CTAGGCAGCA TTTCAAGACC CTGTCTCTAC 001600 001601 TAAAAAGTAA AAAAAAAATT TAGTCAGGCA TGGTGGCATG CACCTGTAGT CGTAGCTACT CAGGAGACTG AGGTGGGAGG 001680 001681 ATTGATTGAG CTCAGGAGTT TGAGGCTGCA GTGAGCAATC ATCATGCCAT TGCACTCCAG CCTGGGCATC AGAGCAAGAC 001760 001761 CTTGTCTTTT AGGAAAAAAA GGCAGGGAAG AGGAATAGGT AATTTTTCAG TGTTCAGACA TTCCAGCAAT ATGTGTGGAG 001840 001841 TACTCATTCT CACTACAGTT TATGAGGCCA TAGCTAGTAT GTATGACTAC CCATCCAAGT TTCCCTGCTT ACAGTTACTA 001920 001921 TTCCAACTGA TTGGGGGGCT TTTCCTAATA GAGTGATTTA AGCCTTCATT TTTAGACATC TAAGCCCTTG GTGATCATCA 002000 002001 GCATAAAATG TGACAAATTA AACAAAAGCA AGACAGCACA TCAGAGAACA ACTCTGAGGT GGAATGATTG GGAACCAATG 002080 002081 AATAGTTGTT CAGTAAATGG TTTATATTTT ACAGATGATG AAACTGAAAC ACAAAAAATT TAGATTAACT CTTAGGTGAC 002160 002161 AAAGCCAGGA TTGAAGCTCA TGCGGTCTGG CTCCAGAACA ACTCTTCTTC ATAGTTACGT TATACTGCCC CTGCATTGTT 002240 002241 GGTATTGAAA AATTTCCTTT CATCTCTGGT AAAAGTCAGC TCTCTAACTA CTGCATCTCA CAGCTGAACA GATAACTGAT 002320 002321 ACCGTGCTTC CAGAAGATTT TTCTAACAGT GTTTGCAAGC TATAAAATAG TGCTTTCACT TAGAAAAGGC TAGACGTGGT 002400 002401 GGTTCATGCC TGTAATCCCA GCACTTTGAG AGGCCGAGGC ACCATGCTGG GAGATAAGGA TCCAACATAA GACAAACAGT 002480 002481 GCTGATGCTT TTGGAAAGCT CATATTCAAG CTGGGGAGAC AAACAACATA CAAGTGGCTG TAGCTACCTT CTGCATATGG 002560 002561 ATATCCAGTT TTCCCAGCAC CACTTATTAA AGAGACTGTC TTTTCTGCAG TGTATATTCT TGGCACCGTT GTTGAAAATG 002640 002641 AATTCATTGT AGGTGTGTGG GTTTGTTTCT GGGTTCTCTA TTCTGTTCAA CTTGTCTATG TGTCTGTTTT TATGCCAGTA 002720 002721 CCGTGTCATT TTAGTTACCA GAGCTCTGCA GTATAATTTG AAACCAGGTC ATGTGATTCC TCCAGTTTTG TGGTATTAGG 002800 002801 ATAGGTTTGG CTATTCTGAG TCTTTTGTGG TTCCATATAA ATTTTAGAAT TTTTTTTTTC TATTTCTGTG AAGAATGTCA 002880 002881 TTGGTATTTT GATAGGGATT GCGTTGAATC TGTAGATTGC TTTGGGTAGT ATGGACATTT TAACAATATT CATTCTTCTA 002960 002961 ATCCATGAAC ATG |
