Difference between revisions of "ENST00000424313.2"
| (2 intermediate revisions by 2 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>GAGGCAGATCCTGCAGCTCCGAAACACCCTCCAAGCTTCACGTTGCCACACGGTTCTGGGAGATGAGGCCATGGCAATCTGTGGCTTCCCTTGCTCCTGAACTTGAGCCTCTGATTCCCTCTCCTGTTGGAGGCTTTAACACGAGTCTGACTGTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTTACTACAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGCACCCCTCCCACAAGCTAGCAGGAGGGTGGAAGTGAGGATGAAGGATCCTTGTGGAAGCTGAGTCCAGCCCAGGATGCCTCTGCCCACTTCTGCTCTGCTCTTAGCACAGGTGCCTGGCTCCCACCTGTTGAGTTACAGGCCACTGACTTCCAAGTCAGGCCAGGAGGTCAGTCATCTTTTCCACCGATCCTCTGCCCTGAGCTGAGTTATCTCGCAC</dnaseq>| | sequence = <dnaseq>GAGGCAGATCCTGCAGCTCCGAAACACCCTCCAAGCTTCACGTTGCCACACGGTTCTGGGAGATGAGGCCATGGCAATCTGTGGCTTCCCTTGCTCCTGAACTTGAGCCTCTGATTCCCTCTCCTGTTGGAGGCTTTAACACGAGTCTGACTGTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTTACTACAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGCACCCCTCCCACAAGCTAGCAGGAGGGTGGAAGTGAGGATGAAGGATCCTTGTGGAAGCTGAGTCCAGCCCAGGATGCCTCTGCCCACTTCTGCTCTGCTCTTAGCACAGGTGCCTGGCTCCCACCTGTTGAGTTACAGGCCACTGACTTCCAAGTCAGGCCAGGAGGTCAGTCATCTTTTCCACCGATCCTCTGCCCTGAGCTGAGTTATCTCGCAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-FAM55B-6]][[Category:NONHSAG009684]] | + | [[Category:Intergenic]][[Category:lnc-FAM55B-6]][[Category:NONHSAG009684]][[Category:ENSG00000255599.1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 15:11, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000424313.2 |
| Source |
Gencode19 |
| Same with |
lnc-FAM55B-6:1,NONHSAT024314 |
| Classification |
intergenic |
| Length |
479 nt |
| Genomic location |
chr11+:115498783..115500461 |
| Exon number |
3 |
| Exons |
115498783..115498925,115499288..115499405,115500244..115500461 |
| Genome context |
|
| Sequence |
000001 GAGGCAGATC CTGCAGCTCC GAAACACCCT CCAAGCTTCA CGTTGCCACA CGGTTCTGGG AGATGAGGCC ATGGCAATCT 000080
000081 GTGGCTTCCC TTGCTCCTGA ACTTGAGCCT CTGATTCCCT CTCCTGTTGG AGGCTTTAAC ACGAGTCTGA CTGTGTCACC 000160 000161 CAGGCTGGAG TGCAGTGGCG TGATCTCGGC TTACTACAAC CTCTGCCTCC TGGGTTCAAG CAATTCTCCT GCCTCAGCCT 000240 000241 CCAGAGTAGC TGGGATTACA GCACCCCTCC CACAAGCTAG CAGGAGGGTG GAAGTGAGGA TGAAGGATCC TTGTGGAAGC 000320 000321 TGAGTCCAGC CCAGGATGCC TCTGCCCACT TCTGCTCTGC TCTTAGCACA GGTGCCTGGC TCCCACCTGT TGAGTTACAG 000400 000401 GCCACTGACT TCCAAGTCAG GCCAGGAGGT CAGTCATCTT TTCCACCGAT CCTCTGCCCT GAGCTGAGTT ATCTCGCAC |
Predicted Small Protein
| Name | ENST00000424313.2_smProtein_62:322 |
| Length | 87 |
| Molecular weight | 9001.2473 |
| Aromaticity | 0.046511627907 |
| Instability index | 69.8337209302 |
| Isoelectric point | 8.63043212891 |
| Runs | 13 |
| Runs residual | 0.0115411315515 |
| Runs probability | 0.0450246626718 |
| Amino acid sequence | MRPWQSVASLAPELEPLIPSPVGGFNTSLTVSPRLECSGVISAYYNLCLLGSSNSPASAS RVAGITAPLPQASRRVEVRMKDPCGS |
| Secondary structure | LLLHHHHHHLLLLLLLLLLLLLLLLLLEEEELLLEEELLEEEEEEEEEEELLLLLLLLHH HHLLLLLLLLLLLEEEEEEEELLLLL |
| PRMN | - |
| PiMo | - |
