Difference between revisions of "ENST00000433108.1"

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sequence = <dnaseq>CTTGAAATGGGCTGAGTCCCTCTTGCTCACCCTTGACTTGGAAAAACCAGTTTCTCTTTTATTGTCTGTTACTAATCTCTATTCTAAAAATTCAGCTCAATTCTCAACCATACTCCAAACTCTCTCTTTTCCAGCTACCTTTACTCCCTCTCCTTCAATTCCACTTTCCTCTGCTTACTTTTTTTTTTTTTCTGACAGGGTCTCACTTTGTCGCCCGGGCAGGAGTGCAGTGGCTCAATCTTGGGCTCACTGCAGCCTCAACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCCCTCAAGTAGCTGGGACTACAAGCGCACACCACCACGCCTGACTAATTTTTTGTATTTTTTTGTAGAGGCGGGGTTTCACCATGTTGCCCAGACTGGTCTTGAACTCCTGAGCTTAAGCAATCCACCTGCCTCGGCCTCCCAAAGTGTTGGGATCACAGGCGTGAGCCACCGCATCCGGCCTCATGTTCTTTTTCATTAAAGAGAGAAATCAACTATTCAGGACCGGCCCCCACCTTTCCTCAGGAGTCATTTCTGTTCCGCACAGGCCTGCTGAACTGGGTGCTTTATATAGGGTAAGTGTTTCTCATTTTTTGTTCCCTGTCCTCAAGCCTTAGGGGCAAAAGAAACATCCAAGATTTGAAATTTCTTTTCTTCTTCTCATCTGCATGGCTGTAGCCATCTCTCTGTTCTGCATTATCTTATGACAAAAAAAAAAAATTCTTATTTTGAAGCAAACTCAAAGCTAGGTCCTGATGTCTCAAGGCACAGGTACTCGTACTTAAAGGTGAGTCTGAAATCTGTGGATTTGGGGAACTTTGGAAAAACAAAGATGAGTGGCTAGATCAGGGGGCTCATTGGGCAGGAAGAGGAGACTGGAAAATGCCATATTCACTGCAAGTCAATTATCAACTTCCTCCAAGGCTAAAATAGCTGAACCTGCTGCATTTTAAACCAATCCTCAGCCACTTTGGTGTTTTCTCAAGGATTTCCAGGGATCCCAGGCAGTAAATTCTGCTGATAATAGGAATTGGTGTGATAAGGTGGGTGCTGAGCAGTTTAAGCACCAAGATTGTAGCTCTGTCTGGTTTTGTGGAGATTTACTCAACTAGAAGAACAGAGATTTGGCTGGTTTTTCAGTCCTGGGGTGCAGGGTGCACCTGTACTGGAAAATTTAGGACGTGGTTTCATTCTTTGAGTCTCATGTTCAAGTTGGTTTTAATGTTATGAAGACACTTGGGACGTAATCCTGAGGGCAGCTGGGGGGAAGAAAGTGGTCACTGGATGGACTTACCCTGTAGCGAGCCCATGCATGGTTTGTTCTCTGATCGTGCATGTGCTTGGCTCTAGACCCATGTAACCATGGTGAAGGCCACTGGGGGATTCAGTTGGCAAAGGCATAGTGGGCAGAAGAATCTTGAACAAGGAGTCCAGAGCAGGTCAAGTCTCCTGATACAGGTTGTGACTCATGGTTTTTTGTCTCTGCCTGTAGCAGCTACAGGTCTGTAAAGCAAGGGGAGAGTGATAAGGAAAGAACTCACCTTTCTGGGGCTCTCTGACATTAATGCCACCTCCCATTTGCTTTTTGCAGACACTGTCATCTCTCAAGTACCCATCTTGGAGGGTACGGACCCCACATGAGGGTGAGGCTCTCTGCACACTCCAGAGTGAGGACTTTAATAATCTAGTGGACTGTACATGTTGGGAGGGGAAGAGCGGGGTGCCGAGGGTCTGGAGGGAGAAGAATTGACTGCCCCTTTTGCTCTTGGAGTTAAGCAGAAATCTAAAGAGAAGGCAAAGAATCTTGCCTTCCTGGCATCATTTCCTCCTACCATCCCAGGCCATCATTTATTTATTACAGCCAACAGACTGGCCTCTTTCTTCCCTTTGACTGGGAATGGGTCAAAGGCGGTGCAGGAGGAGGATCTGGTCCAGATAATTCACAAGCAGGGTGCATTTTCCTCTCATTATTGAGAACTGTGAGTGTTTATCAAGAAGGCAGAGCAGGAGAAGATGAACCAGTCTTCTTCCCCTCACTACCCAGATCTCTGCCTGCCAACAAGCCCCGTGTTCACCCTGGCAAAGAGTCTTTACATTCAGACCAAGGAGAGTGTGACTCCTTCTCAGCACTAGCTAGAAACCTCAAGCCCTTGCTTAAGGGCCTTTTTCAGAGAGACCCAATGCCCAGAAGGCTAGATGCGTGGGGAGGAGCCACATACGAGAAACTGCCTCCCTGCTTCGGGTCAGAACAAGCCCCAGGAAGAAAGTATTTCAAACAACAAGGTGCATCTGCCCCAACCCATCCAGCCTGCATGTTGGTGCTGAGAACAGCCTTTTATGGGGCTTGCACTGAGCCATGGGCATGTCTGAACACAACAAGGAAGAGGCCAGAGCAGCAACAGCACGCAAAGGGTTGATGGGCATTTCTTTTAAGACAGAGCAGAAAACTCTTAGATACTTTGCGTCCTTCCTATTTGACTCAGTCTATGAAAGCCAGGTTAGCTTGCTTTCTTCCTCCCTAAATCCTCCATCCTCATGACCAACAAAGAAATAGTTGAATCATTTTCCAGGCACATCTTGGGGAGGATGTGGGGCCATTGGAGGCTGTCCTTCCTAGATAAGTCTTTAGGAGTGAGAACAAGGAGTCTTACCCTCCTCTGTCCACCCACCCCCATGAATGGGCCTGGCTCCAGCCAGGAGTTGTGGTTTTTCCTGAGCTCCTCACCTATCTCTTCTGGATTTCACATTGGCAAACGGGGTTGCAAAGTGCTCTTCGTGCTCTTTGGACAGTGCCTTGTGGAGAGGAATGCCCATGCCCCTGCATTCCAAGGCCTTGGTAAGCAAGCTCAGAGTAGCTGGATTTTTCTAAAGCAATTGCAGAACACCTGCTTTTTCTTTGTTTCCTCTAGAAAGGACCAACCACACCGAGCTCAGTTATGGCACACACAGTGGGACCTAGACAAAGGGAGAGGGTGACCGACATCCCAACTAGATTTCAGTGGAGTGAAGTTCAGGAGGCATGGAGCTGACAACCATGAGGCCTCGGCAGCCACCGCCACCACCGCCGCCGCCACCACCGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGTAACTCTGACTTAGGAATAGAGACAGCCAGAGAGAAATGTGATCAATGAAGGAGACATCTGGAGTGTGCGTGCTTCTTCAGAGGGACGGGTGATGGGCAGATTGGAAAAAGCACCGCAGATGGGAACCTTAATCTTTCTTTTCTAAAATTGATGCTATGAAAATTTGCGTTTTCTGTAACTTGTAAAAACTAAAAGTTGCTTGTCTACTG</dnaseq>|
 
sequence = <dnaseq>CTTGAAATGGGCTGAGTCCCTCTTGCTCACCCTTGACTTGGAAAAACCAGTTTCTCTTTTATTGTCTGTTACTAATCTCTATTCTAAAAATTCAGCTCAATTCTCAACCATACTCCAAACTCTCTCTTTTCCAGCTACCTTTACTCCCTCTCCTTCAATTCCACTTTCCTCTGCTTACTTTTTTTTTTTTTCTGACAGGGTCTCACTTTGTCGCCCGGGCAGGAGTGCAGTGGCTCAATCTTGGGCTCACTGCAGCCTCAACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCCCTCAAGTAGCTGGGACTACAAGCGCACACCACCACGCCTGACTAATTTTTTGTATTTTTTTGTAGAGGCGGGGTTTCACCATGTTGCCCAGACTGGTCTTGAACTCCTGAGCTTAAGCAATCCACCTGCCTCGGCCTCCCAAAGTGTTGGGATCACAGGCGTGAGCCACCGCATCCGGCCTCATGTTCTTTTTCATTAAAGAGAGAAATCAACTATTCAGGACCGGCCCCCACCTTTCCTCAGGAGTCATTTCTGTTCCGCACAGGCCTGCTGAACTGGGTGCTTTATATAGGGTAAGTGTTTCTCATTTTTTGTTCCCTGTCCTCAAGCCTTAGGGGCAAAAGAAACATCCAAGATTTGAAATTTCTTTTCTTCTTCTCATCTGCATGGCTGTAGCCATCTCTCTGTTCTGCATTATCTTATGACAAAAAAAAAAAATTCTTATTTTGAAGCAAACTCAAAGCTAGGTCCTGATGTCTCAAGGCACAGGTACTCGTACTTAAAGGTGAGTCTGAAATCTGTGGATTTGGGGAACTTTGGAAAAACAAAGATGAGTGGCTAGATCAGGGGGCTCATTGGGCAGGAAGAGGAGACTGGAAAATGCCATATTCACTGCAAGTCAATTATCAACTTCCTCCAAGGCTAAAATAGCTGAACCTGCTGCATTTTAAACCAATCCTCAGCCACTTTGGTGTTTTCTCAAGGATTTCCAGGGATCCCAGGCAGTAAATTCTGCTGATAATAGGAATTGGTGTGATAAGGTGGGTGCTGAGCAGTTTAAGCACCAAGATTGTAGCTCTGTCTGGTTTTGTGGAGATTTACTCAACTAGAAGAACAGAGATTTGGCTGGTTTTTCAGTCCTGGGGTGCAGGGTGCACCTGTACTGGAAAATTTAGGACGTGGTTTCATTCTTTGAGTCTCATGTTCAAGTTGGTTTTAATGTTATGAAGACACTTGGGACGTAATCCTGAGGGCAGCTGGGGGGAAGAAAGTGGTCACTGGATGGACTTACCCTGTAGCGAGCCCATGCATGGTTTGTTCTCTGATCGTGCATGTGCTTGGCTCTAGACCCATGTAACCATGGTGAAGGCCACTGGGGGATTCAGTTGGCAAAGGCATAGTGGGCAGAAGAATCTTGAACAAGGAGTCCAGAGCAGGTCAAGTCTCCTGATACAGGTTGTGACTCATGGTTTTTTGTCTCTGCCTGTAGCAGCTACAGGTCTGTAAAGCAAGGGGAGAGTGATAAGGAAAGAACTCACCTTTCTGGGGCTCTCTGACATTAATGCCACCTCCCATTTGCTTTTTGCAGACACTGTCATCTCTCAAGTACCCATCTTGGAGGGTACGGACCCCACATGAGGGTGAGGCTCTCTGCACACTCCAGAGTGAGGACTTTAATAATCTAGTGGACTGTACATGTTGGGAGGGGAAGAGCGGGGTGCCGAGGGTCTGGAGGGAGAAGAATTGACTGCCCCTTTTGCTCTTGGAGTTAAGCAGAAATCTAAAGAGAAGGCAAAGAATCTTGCCTTCCTGGCATCATTTCCTCCTACCATCCCAGGCCATCATTTATTTATTACAGCCAACAGACTGGCCTCTTTCTTCCCTTTGACTGGGAATGGGTCAAAGGCGGTGCAGGAGGAGGATCTGGTCCAGATAATTCACAAGCAGGGTGCATTTTCCTCTCATTATTGAGAACTGTGAGTGTTTATCAAGAAGGCAGAGCAGGAGAAGATGAACCAGTCTTCTTCCCCTCACTACCCAGATCTCTGCCTGCCAACAAGCCCCGTGTTCACCCTGGCAAAGAGTCTTTACATTCAGACCAAGGAGAGTGTGACTCCTTCTCAGCACTAGCTAGAAACCTCAAGCCCTTGCTTAAGGGCCTTTTTCAGAGAGACCCAATGCCCAGAAGGCTAGATGCGTGGGGAGGAGCCACATACGAGAAACTGCCTCCCTGCTTCGGGTCAGAACAAGCCCCAGGAAGAAAGTATTTCAAACAACAAGGTGCATCTGCCCCAACCCATCCAGCCTGCATGTTGGTGCTGAGAACAGCCTTTTATGGGGCTTGCACTGAGCCATGGGCATGTCTGAACACAACAAGGAAGAGGCCAGAGCAGCAACAGCACGCAAAGGGTTGATGGGCATTTCTTTTAAGACAGAGCAGAAAACTCTTAGATACTTTGCGTCCTTCCTATTTGACTCAGTCTATGAAAGCCAGGTTAGCTTGCTTTCTTCCTCCCTAAATCCTCCATCCTCATGACCAACAAAGAAATAGTTGAATCATTTTCCAGGCACATCTTGGGGAGGATGTGGGGCCATTGGAGGCTGTCCTTCCTAGATAAGTCTTTAGGAGTGAGAACAAGGAGTCTTACCCTCCTCTGTCCACCCACCCCCATGAATGGGCCTGGCTCCAGCCAGGAGTTGTGGTTTTTCCTGAGCTCCTCACCTATCTCTTCTGGATTTCACATTGGCAAACGGGGTTGCAAAGTGCTCTTCGTGCTCTTTGGACAGTGCCTTGTGGAGAGGAATGCCCATGCCCCTGCATTCCAAGGCCTTGGTAAGCAAGCTCAGAGTAGCTGGATTTTTCTAAAGCAATTGCAGAACACCTGCTTTTTCTTTGTTTCCTCTAGAAAGGACCAACCACACCGAGCTCAGTTATGGCACACACAGTGGGACCTAGACAAAGGGAGAGGGTGACCGACATCCCAACTAGATTTCAGTGGAGTGAAGTTCAGGAGGCATGGAGCTGACAACCATGAGGCCTCGGCAGCCACCGCCACCACCGCCGCCGCCACCACCGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGTAACTCTGACTTAGGAATAGAGACAGCCAGAGAGAAATGTGATCAATGAAGGAGACATCTGGAGTGTGCGTGCTTCTTCAGAGGGACGGGTGATGGGCAGATTGGAAAAAGCACCGCAGATGGGAACCTTAATCTTTCTTTTCTAAAATTGATGCTATGAAAATTTGCGTTTTCTGTAACTTGTAAAAACTAAAAGTTGCTTGTCTACTG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-CAMK1G-1]][[Category:NONHSAG004163]][[Category:Transcripts]]
+
[[Category:Intergenic]][[Category:lnc-CAMK1G-1]][[Category:NONHSAG004163]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 15:26, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000433108.1

Source

Gencode19

Same with

lnc-CAMK1G-1:2,NONHSAT009207

Classification

intergenic

Length

3348 nt

Genomic location

chr1+:209602165..209605890

Exon number

2

Exons

209602165..209605170,209605549..209605890

Genome context

Sequence
000001 CTTGAAATGG GCTGAGTCCC TCTTGCTCAC CCTTGACTTG GAAAAACCAG TTTCTCTTTT ATTGTCTGTT ACTAATCTCT 000080
000081 ATTCTAAAAA TTCAGCTCAA TTCTCAACCA TACTCCAAAC TCTCTCTTTT CCAGCTACCT TTACTCCCTC TCCTTCAATT 000160
000161 CCACTTTCCT CTGCTTACTT TTTTTTTTTT TCTGACAGGG TCTCACTTTG TCGCCCGGGC AGGAGTGCAG TGGCTCAATC 000240
000241 TTGGGCTCAC TGCAGCCTCA ACCTCCCAGG TTCAAGCGAT TCTCCTGCCT CAGCCCCTCA AGTAGCTGGG ACTACAAGCG 000320
000321 CACACCACCA CGCCTGACTA ATTTTTTGTA TTTTTTTGTA GAGGCGGGGT TTCACCATGT TGCCCAGACT GGTCTTGAAC 000400
000401 TCCTGAGCTT AAGCAATCCA CCTGCCTCGG CCTCCCAAAG TGTTGGGATC ACAGGCGTGA GCCACCGCAT CCGGCCTCAT 000480
000481 GTTCTTTTTC ATTAAAGAGA GAAATCAACT ATTCAGGACC GGCCCCCACC TTTCCTCAGG AGTCATTTCT GTTCCGCACA 000560
000561 GGCCTGCTGA ACTGGGTGCT TTATATAGGG TAAGTGTTTC TCATTTTTTG TTCCCTGTCC TCAAGCCTTA GGGGCAAAAG 000640
000641 AAACATCCAA GATTTGAAAT TTCTTTTCTT CTTCTCATCT GCATGGCTGT AGCCATCTCT CTGTTCTGCA TTATCTTATG 000720
000721 ACAAAAAAAA AAAATTCTTA TTTTGAAGCA AACTCAAAGC TAGGTCCTGA TGTCTCAAGG CACAGGTACT CGTACTTAAA 000800
000801 GGTGAGTCTG AAATCTGTGG ATTTGGGGAA CTTTGGAAAA ACAAAGATGA GTGGCTAGAT CAGGGGGCTC ATTGGGCAGG 000880
000881 AAGAGGAGAC TGGAAAATGC CATATTCACT GCAAGTCAAT TATCAACTTC CTCCAAGGCT AAAATAGCTG AACCTGCTGC 000960
000961 ATTTTAAACC AATCCTCAGC CACTTTGGTG TTTTCTCAAG GATTTCCAGG GATCCCAGGC AGTAAATTCT GCTGATAATA 001040
001041 GGAATTGGTG TGATAAGGTG GGTGCTGAGC AGTTTAAGCA CCAAGATTGT AGCTCTGTCT GGTTTTGTGG AGATTTACTC 001120
001121 AACTAGAAGA ACAGAGATTT GGCTGGTTTT TCAGTCCTGG GGTGCAGGGT GCACCTGTAC TGGAAAATTT AGGACGTGGT 001200
001201 TTCATTCTTT GAGTCTCATG TTCAAGTTGG TTTTAATGTT ATGAAGACAC TTGGGACGTA ATCCTGAGGG CAGCTGGGGG 001280
001281 GAAGAAAGTG GTCACTGGAT GGACTTACCC TGTAGCGAGC CCATGCATGG TTTGTTCTCT GATCGTGCAT GTGCTTGGCT 001360
001361 CTAGACCCAT GTAACCATGG TGAAGGCCAC TGGGGGATTC AGTTGGCAAA GGCATAGTGG GCAGAAGAAT CTTGAACAAG 001440
001441 GAGTCCAGAG CAGGTCAAGT CTCCTGATAC AGGTTGTGAC TCATGGTTTT TTGTCTCTGC CTGTAGCAGC TACAGGTCTG 001520
001521 TAAAGCAAGG GGAGAGTGAT AAGGAAAGAA CTCACCTTTC TGGGGCTCTC TGACATTAAT GCCACCTCCC ATTTGCTTTT 001600
001601 TGCAGACACT GTCATCTCTC AAGTACCCAT CTTGGAGGGT ACGGACCCCA CATGAGGGTG AGGCTCTCTG CACACTCCAG 001680
001681 AGTGAGGACT TTAATAATCT AGTGGACTGT ACATGTTGGG AGGGGAAGAG CGGGGTGCCG AGGGTCTGGA GGGAGAAGAA 001760
001761 TTGACTGCCC CTTTTGCTCT TGGAGTTAAG CAGAAATCTA AAGAGAAGGC AAAGAATCTT GCCTTCCTGG CATCATTTCC 001840
001841 TCCTACCATC CCAGGCCATC ATTTATTTAT TACAGCCAAC AGACTGGCCT CTTTCTTCCC TTTGACTGGG AATGGGTCAA 001920
001921 AGGCGGTGCA GGAGGAGGAT CTGGTCCAGA TAATTCACAA GCAGGGTGCA TTTTCCTCTC ATTATTGAGA ACTGTGAGTG 002000
002001 TTTATCAAGA AGGCAGAGCA GGAGAAGATG AACCAGTCTT CTTCCCCTCA CTACCCAGAT CTCTGCCTGC CAACAAGCCC 002080
002081 CGTGTTCACC CTGGCAAAGA GTCTTTACAT TCAGACCAAG GAGAGTGTGA CTCCTTCTCA GCACTAGCTA GAAACCTCAA 002160
002161 GCCCTTGCTT AAGGGCCTTT TTCAGAGAGA CCCAATGCCC AGAAGGCTAG ATGCGTGGGG AGGAGCCACA TACGAGAAAC 002240
002241 TGCCTCCCTG CTTCGGGTCA GAACAAGCCC CAGGAAGAAA GTATTTCAAA CAACAAGGTG CATCTGCCCC AACCCATCCA 002320
002321 GCCTGCATGT TGGTGCTGAG AACAGCCTTT TATGGGGCTT GCACTGAGCC ATGGGCATGT CTGAACACAA CAAGGAAGAG 002400
002401 GCCAGAGCAG CAACAGCACG CAAAGGGTTG ATGGGCATTT CTTTTAAGAC AGAGCAGAAA ACTCTTAGAT ACTTTGCGTC 002480
002481 CTTCCTATTT GACTCAGTCT ATGAAAGCCA GGTTAGCTTG CTTTCTTCCT CCCTAAATCC TCCATCCTCA TGACCAACAA 002560
002561 AGAAATAGTT GAATCATTTT CCAGGCACAT CTTGGGGAGG ATGTGGGGCC ATTGGAGGCT GTCCTTCCTA GATAAGTCTT 002640
002641 TAGGAGTGAG AACAAGGAGT CTTACCCTCC TCTGTCCACC CACCCCCATG AATGGGCCTG GCTCCAGCCA GGAGTTGTGG 002720
002721 TTTTTCCTGA GCTCCTCACC TATCTCTTCT GGATTTCACA TTGGCAAACG GGGTTGCAAA GTGCTCTTCG TGCTCTTTGG 002800
002801 ACAGTGCCTT GTGGAGAGGA ATGCCCATGC CCCTGCATTC CAAGGCCTTG GTAAGCAAGC TCAGAGTAGC TGGATTTTTC 002880
002881 TAAAGCAATT GCAGAACACC TGCTTTTTCT TTGTTTCCTC TAGAAAGGAC CAACCACACC GAGCTCAGTT ATGGCACACA 002960
002961 CAGTGGGACC TAGACAAAGG GAGAGGGTGA CCGACATCCC AACTAGATTT CAGTGGAGTG AAGTTCAGGA GGCATGGAGC 003040
003041 TGACAACCAT GAGGCCTCGG CAGCCACCGC CACCACCGCC GCCGCCACCA CCGTAGCAGC AGCAGCAGCA GCAGCAGCAG 003120
003121 CAGCAGCAGC AGCAAGAGTA ACTCTGACTT AGGAATAGAG ACAGCCAGAG AGAAATGTGA TCAATGAAGG AGACATCTGG 003200
003201 AGTGTGCGTG CTTCTTCAGA GGGACGGGTG ATGGGCAGAT TGGAAAAAGC ACCGCAGATG GGAACCTTAA TCTTTCTTTT 003280
003281 CTAAAATTGA TGCTATGAAA ATTTGCGTTT TCTGTAACTT GTAAAAACTA AAAGTTGCTT GTCTACTG
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