Difference between revisions of "ENST00000433317.1"

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sequence = <dnaseq>GTTTCCTCCAGGTGTGGAGATGCTTGTATCTGGGACCCCCTGCCATTTCTCAGGACACCCTCCTGCTCCTAGCTGGGAGATCCAGCATCCTCATGAATGCGGGGCCCAAGGCCACCAACTGTTCCACCTGCTGTCAGCCAGGCCTGTTGCCCCAGCCCTACACCCACAGCTCACCCAGCAGGGACTGGAGTGTGCTGCTGCACTGCTGGAGCCGGTCGCCCGGGTCGGAGGTTGGGAAGAAGACAGCCGCTGGCAGGCCACTGGTTGGGGGGTCCAGCCGGAAGCCCACAGCGGTGAGGAGGGCCTGCCAGCCAGGGATGCCGCCCACTTTGTTCTCCACACTCTGCTGGGATGTGTACATGGCATTGCGCTGCCCATTCTGGATGCGCTGCAGGGATTTCTCCACCTGAGGGGGAATTGGGGTAAACACTGGGATGCCGGAGCTCAGGCATCCCAGACAGGAGGAAGTGTGTACTCACACCAGCCAGGAGGAAACAAGCCTGCCTGGGAGGACAGACGATCAGCCCTGGCTGTCCCTCAGGAGCGGGGGGCCTCCAAGGCACACTGCCCACTGGGTCAAGGAGTATCCAGGAGGAGTTAGAAGCATGACCCATCTGCCTGGCACCAGCACCTGGGGCTGCCAGGCAGCCACCCCTGCAGCTGTGTTGACAGGACCTGGCAGAGGGACTGACCCACCTTTGGAAAATGACACCAGCAATATCAGGATGTGTCAACTGGATTTATGCTAAGAAAATAGGATTTTTGGTGTTCCTCTGTTTCCCAAAGTTTGAGACACTTTCAGACACTCTGCTTTGCGGTTGTGGCCGATGTTACCCATGGGTGGGACTTTTGCTTTGCTCTAGATTTTTGTAACACCCTGGGGAGTTTCAGGGGCCAATGCTGAGAGAAGACCACAGGCTGACACATCATGAGACCCTCTGGGCAGGTCCACTAAGAGCATGTATTCTAGAACATGCAGGGCTTGAAGCTTCACAAGATATTCAGTGCACTCCTTACAGATCCTGTCAAATGTGGACCGGGTGGTGTCATCGCACCACCATCATCCCCTTGTTACCCCTGAGAACACAGCTTCAGAGAGGGTAAGTAACCTATCTCAGGCCACACAGCCAGGACATGGAGTAGATCCATCCTAAGTCTTTCTACCACACACTCCTTTCTACAGTCATGGGTTAAATGAGGGTGCCATGGAATGGGTCATCCAGTGTACACTGACATCAGGAGGAGTTTCACATTCATACACTCATGGCAAATGGTTCTGTTGCTCCCTGGTCCAAAGATGATCTTAATAGTAGGAAAAACTCATTTGGCAGAAGCAAGACTCAGCACACAGGCTCTCTCCCTGAGTCTTCTGTGGCTGGCCTTGCCCTGCCCTCCCCTCCCCAACCCCACTGGCAGAATAAAGTCGGGGGGCTGTGAGGACTGAGCCCCAGGCCTTGACAGGCACCCGCAGCCAGCCGAACTCCCACCTGCCCAGTTGGAGGGGTGCGAGAAGGCCTTGCTGCTCTGCACCACCTTCATGGCCTCCCCCAGGGCGGCGCTGGCTTTCAGGCCGTTCAGCAGGGATGAGTAGAAGGCATGGATGAACATCTTAGAAGCAGCCACTGGCACAGGCCACAGAGACACGAGGACACACTGAGCGCCGGCAGCCAGGAAGGCCCTTGTCAGCGCGATGACCCCGTCGGCTGTGACTTTGCTGTTGGACTCCTGGGAGGAGCCAAGCACCACCAGCTTCACAGGCAGCTGCAGGTCCAGGACGTCGGCGGCAGTGCCTAACTTACTGAGAATCATGCCTGCTGTGATGAGCCCTTGGAAACCATCAGGACTGGATGGTAGGGGTCCTGAGAGGATTGGGGGAGGAGGCCTTGATATGACAGAGTGGACAGAGGCCGTGGAACCCAGGACAGCCAGCCTGCTCCACAATCCTCATCCCCACAGACCTTCATGTGTGGCTCCTAAATAAGAGGAAACCCACTCCTGATAAGTCAGGGGCTTTGAAAAGTGATTTTGTTTAAATGGTGCAAACAAGCAAGCCAATCTTGGGGAGACAGGGCTAAACTTAAGTCCTTTAAGAAGCTCTACATACTGACAAGATTCTAGTTCCCTTCCACCTTATATGCTGCAAAGTAAAAAGTATCACTGAATGAGAAAATCAGCATAAAGAAGCCCAATAATGTCTGCCTGAGTTTCCCCTATGATGACTTTTGGTACTTTTTGGGAAACATTAAGTATGAAGTTATTTCAAAATAATTTTTTGGTGCCTCTGCTTGGTGATGCCTTAAACTCTGGGTAAGAGAAACACCAGGTGCCTGTCAGGAGATGGCCTTTTCCAGGTTTCTGGTTAAGCTACAAACAGCTAACTGGCTGCTGTCATCAAAATAAAAGCTTTCTGAAGGTGGAGGCATCTGATACCCAGAGTGCTGCTATCAGCCGGCACGGTGGGCCGCTGGGTGGCAGGAGCGTCGAGAAGGCCAGCTCGCTTCCTATCTGGGATTCAGAATCAGCTATGGAAACTTGAGAGACCTAGAGAAAATAACTTCTTTCACTTTGAACTGATTCTTTGCTTCATAAGAAAAGTATTATCCAGCCACAAAAATGGTCAAAATTCAGATCTACAAAAGCCTGTCAGGCAGAAACTGACCCCACTTAGGCCACGCCAATGAGCAAGTCATCAAAGCAGCCAAGACAGGTCCTGTGGGGGCCACCCATGCACAGGGCCCAGCCTCGGGTCCTAACCCCGCCTATGCTTTCCGCCACCATAAAGAGGCCCATCTGGGTAAGACCTGTCCCGCCTGCTGTGGGGTATTAGGGCAGATGGGGTCTGAGGGGTCTGAGGGCTCTGAGAGCAGCTGGCAGCTCAAGGACATCCGGAGTTGGAGGATGGAGCAATGCAGGCCCTTGTGGTAAAGACAGTCCTGCAGCCGCGCAGGCAGGGATGCTGCAAGTGGAGTGCCAGGCGGGTGCGGAGCCCTGTGGGACTGTGGAGGGGTCAGAGGGAAGCCAGGATTTTGGGGTCTCTGAGAGTTTGGAGAAGGGGAAGAAGATTAAAGCTTGTTTCAAAA</dnaseq>|
 
sequence = <dnaseq>GTTTCCTCCAGGTGTGGAGATGCTTGTATCTGGGACCCCCTGCCATTTCTCAGGACACCCTCCTGCTCCTAGCTGGGAGATCCAGCATCCTCATGAATGCGGGGCCCAAGGCCACCAACTGTTCCACCTGCTGTCAGCCAGGCCTGTTGCCCCAGCCCTACACCCACAGCTCACCCAGCAGGGACTGGAGTGTGCTGCTGCACTGCTGGAGCCGGTCGCCCGGGTCGGAGGTTGGGAAGAAGACAGCCGCTGGCAGGCCACTGGTTGGGGGGTCCAGCCGGAAGCCCACAGCGGTGAGGAGGGCCTGCCAGCCAGGGATGCCGCCCACTTTGTTCTCCACACTCTGCTGGGATGTGTACATGGCATTGCGCTGCCCATTCTGGATGCGCTGCAGGGATTTCTCCACCTGAGGGGGAATTGGGGTAAACACTGGGATGCCGGAGCTCAGGCATCCCAGACAGGAGGAAGTGTGTACTCACACCAGCCAGGAGGAAACAAGCCTGCCTGGGAGGACAGACGATCAGCCCTGGCTGTCCCTCAGGAGCGGGGGGCCTCCAAGGCACACTGCCCACTGGGTCAAGGAGTATCCAGGAGGAGTTAGAAGCATGACCCATCTGCCTGGCACCAGCACCTGGGGCTGCCAGGCAGCCACCCCTGCAGCTGTGTTGACAGGACCTGGCAGAGGGACTGACCCACCTTTGGAAAATGACACCAGCAATATCAGGATGTGTCAACTGGATTTATGCTAAGAAAATAGGATTTTTGGTGTTCCTCTGTTTCCCAAAGTTTGAGACACTTTCAGACACTCTGCTTTGCGGTTGTGGCCGATGTTACCCATGGGTGGGACTTTTGCTTTGCTCTAGATTTTTGTAACACCCTGGGGAGTTTCAGGGGCCAATGCTGAGAGAAGACCACAGGCTGACACATCATGAGACCCTCTGGGCAGGTCCACTAAGAGCATGTATTCTAGAACATGCAGGGCTTGAAGCTTCACAAGATATTCAGTGCACTCCTTACAGATCCTGTCAAATGTGGACCGGGTGGTGTCATCGCACCACCATCATCCCCTTGTTACCCCTGAGAACACAGCTTCAGAGAGGGTAAGTAACCTATCTCAGGCCACACAGCCAGGACATGGAGTAGATCCATCCTAAGTCTTTCTACCACACACTCCTTTCTACAGTCATGGGTTAAATGAGGGTGCCATGGAATGGGTCATCCAGTGTACACTGACATCAGGAGGAGTTTCACATTCATACACTCATGGCAAATGGTTCTGTTGCTCCCTGGTCCAAAGATGATCTTAATAGTAGGAAAAACTCATTTGGCAGAAGCAAGACTCAGCACACAGGCTCTCTCCCTGAGTCTTCTGTGGCTGGCCTTGCCCTGCCCTCCCCTCCCCAACCCCACTGGCAGAATAAAGTCGGGGGGCTGTGAGGACTGAGCCCCAGGCCTTGACAGGCACCCGCAGCCAGCCGAACTCCCACCTGCCCAGTTGGAGGGGTGCGAGAAGGCCTTGCTGCTCTGCACCACCTTCATGGCCTCCCCCAGGGCGGCGCTGGCTTTCAGGCCGTTCAGCAGGGATGAGTAGAAGGCATGGATGAACATCTTAGAAGCAGCCACTGGCACAGGCCACAGAGACACGAGGACACACTGAGCGCCGGCAGCCAGGAAGGCCCTTGTCAGCGCGATGACCCCGTCGGCTGTGACTTTGCTGTTGGACTCCTGGGAGGAGCCAAGCACCACCAGCTTCACAGGCAGCTGCAGGTCCAGGACGTCGGCGGCAGTGCCTAACTTACTGAGAATCATGCCTGCTGTGATGAGCCCTTGGAAACCATCAGGACTGGATGGTAGGGGTCCTGAGAGGATTGGGGGAGGAGGCCTTGATATGACAGAGTGGACAGAGGCCGTGGAACCCAGGACAGCCAGCCTGCTCCACAATCCTCATCCCCACAGACCTTCATGTGTGGCTCCTAAATAAGAGGAAACCCACTCCTGATAAGTCAGGGGCTTTGAAAAGTGATTTTGTTTAAATGGTGCAAACAAGCAAGCCAATCTTGGGGAGACAGGGCTAAACTTAAGTCCTTTAAGAAGCTCTACATACTGACAAGATTCTAGTTCCCTTCCACCTTATATGCTGCAAAGTAAAAAGTATCACTGAATGAGAAAATCAGCATAAAGAAGCCCAATAATGTCTGCCTGAGTTTCCCCTATGATGACTTTTGGTACTTTTTGGGAAACATTAAGTATGAAGTTATTTCAAAATAATTTTTTGGTGCCTCTGCTTGGTGATGCCTTAAACTCTGGGTAAGAGAAACACCAGGTGCCTGTCAGGAGATGGCCTTTTCCAGGTTTCTGGTTAAGCTACAAACAGCTAACTGGCTGCTGTCATCAAAATAAAAGCTTTCTGAAGGTGGAGGCATCTGATACCCAGAGTGCTGCTATCAGCCGGCACGGTGGGCCGCTGGGTGGCAGGAGCGTCGAGAAGGCCAGCTCGCTTCCTATCTGGGATTCAGAATCAGCTATGGAAACTTGAGAGACCTAGAGAAAATAACTTCTTTCACTTTGAACTGATTCTTTGCTTCATAAGAAAAGTATTATCCAGCCACAAAAATGGTCAAAATTCAGATCTACAAAAGCCTGTCAGGCAGAAACTGACCCCACTTAGGCCACGCCAATGAGCAAGTCATCAAAGCAGCCAAGACAGGTCCTGTGGGGGCCACCCATGCACAGGGCCCAGCCTCGGGTCCTAACCCCGCCTATGCTTTCCGCCACCATAAAGAGGCCCATCTGGGTAAGACCTGTCCCGCCTGCTGTGGGGTATTAGGGCAGATGGGGTCTGAGGGGTCTGAGGGCTCTGAGAGCAGCTGGCAGCTCAAGGACATCCGGAGTTGGAGGATGGAGCAATGCAGGCCCTTGTGGTAAAGACAGTCCTGCAGCCGCGCAGGCAGGGATGCTGCAAGTGGAGTGCCAGGCGGGTGCGGAGCCCTGTGGGACTGTGGAGGGGTCAGAGGGAAGCCAGGATTTTGGGGTCTCTGAGAGTTTGGAGAAGGGGAAGAAGATTAAAGCTTGTTTCAAAA</dnaseq>|
 
}}
 
}}
[[Category:Antisense]]
+
[[Category:Antisense]][[Category:lnc-HSCB-1]][[Category:NONHSAG033611]][[Category:ENSG00000235954.2]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 15:27, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000433317.1

Source

Gencode19

Same with

lnc-HSCB-1:20,NONHSAT084638

Classification

antisense

Length

3080 nt

Genomic location

chr22+:28389101..28396711

Exon number

5

Exons

28389101..28389523,28390461..28390641,28393399..28393727,28393974..28394826,28395418..28396711

Genome context

Sequence
000001 GTTTCCTCCA GGTGTGGAGA TGCTTGTATC TGGGACCCCC TGCCATTTCT CAGGACACCC TCCTGCTCCT AGCTGGGAGA 000080
000081 TCCAGCATCC TCATGAATGC GGGGCCCAAG GCCACCAACT GTTCCACCTG CTGTCAGCCA GGCCTGTTGC CCCAGCCCTA 000160
000161 CACCCACAGC TCACCCAGCA GGGACTGGAG TGTGCTGCTG CACTGCTGGA GCCGGTCGCC CGGGTCGGAG GTTGGGAAGA 000240
000241 AGACAGCCGC TGGCAGGCCA CTGGTTGGGG GGTCCAGCCG GAAGCCCACA GCGGTGAGGA GGGCCTGCCA GCCAGGGATG 000320
000321 CCGCCCACTT TGTTCTCCAC ACTCTGCTGG GATGTGTACA TGGCATTGCG CTGCCCATTC TGGATGCGCT GCAGGGATTT 000400
000401 CTCCACCTGA GGGGGAATTG GGGTAAACAC TGGGATGCCG GAGCTCAGGC ATCCCAGACA GGAGGAAGTG TGTACTCACA 000480
000481 CCAGCCAGGA GGAAACAAGC CTGCCTGGGA GGACAGACGA TCAGCCCTGG CTGTCCCTCA GGAGCGGGGG GCCTCCAAGG 000560
000561 CACACTGCCC ACTGGGTCAA GGAGTATCCA GGAGGAGTTA GAAGCATGAC CCATCTGCCT GGCACCAGCA CCTGGGGCTG 000640
000641 CCAGGCAGCC ACCCCTGCAG CTGTGTTGAC AGGACCTGGC AGAGGGACTG ACCCACCTTT GGAAAATGAC ACCAGCAATA 000720
000721 TCAGGATGTG TCAACTGGAT TTATGCTAAG AAAATAGGAT TTTTGGTGTT CCTCTGTTTC CCAAAGTTTG AGACACTTTC 000800
000801 AGACACTCTG CTTTGCGGTT GTGGCCGATG TTACCCATGG GTGGGACTTT TGCTTTGCTC TAGATTTTTG TAACACCCTG 000880
000881 GGGAGTTTCA GGGGCCAATG CTGAGAGAAG ACCACAGGCT GACACATCAT GAGACCCTCT GGGCAGGTCC ACTAAGAGCA 000960
000961 TGTATTCTAG AACATGCAGG GCTTGAAGCT TCACAAGATA TTCAGTGCAC TCCTTACAGA TCCTGTCAAA TGTGGACCGG 001040
001041 GTGGTGTCAT CGCACCACCA TCATCCCCTT GTTACCCCTG AGAACACAGC TTCAGAGAGG GTAAGTAACC TATCTCAGGC 001120
001121 CACACAGCCA GGACATGGAG TAGATCCATC CTAAGTCTTT CTACCACACA CTCCTTTCTA CAGTCATGGG TTAAATGAGG 001200
001201 GTGCCATGGA ATGGGTCATC CAGTGTACAC TGACATCAGG AGGAGTTTCA CATTCATACA CTCATGGCAA ATGGTTCTGT 001280
001281 TGCTCCCTGG TCCAAAGATG ATCTTAATAG TAGGAAAAAC TCATTTGGCA GAAGCAAGAC TCAGCACACA GGCTCTCTCC 001360
001361 CTGAGTCTTC TGTGGCTGGC CTTGCCCTGC CCTCCCCTCC CCAACCCCAC TGGCAGAATA AAGTCGGGGG GCTGTGAGGA 001440
001441 CTGAGCCCCA GGCCTTGACA GGCACCCGCA GCCAGCCGAA CTCCCACCTG CCCAGTTGGA GGGGTGCGAG AAGGCCTTGC 001520
001521 TGCTCTGCAC CACCTTCATG GCCTCCCCCA GGGCGGCGCT GGCTTTCAGG CCGTTCAGCA GGGATGAGTA GAAGGCATGG 001600
001601 ATGAACATCT TAGAAGCAGC CACTGGCACA GGCCACAGAG ACACGAGGAC ACACTGAGCG CCGGCAGCCA GGAAGGCCCT 001680
001681 TGTCAGCGCG ATGACCCCGT CGGCTGTGAC TTTGCTGTTG GACTCCTGGG AGGAGCCAAG CACCACCAGC TTCACAGGCA 001760
001761 GCTGCAGGTC CAGGACGTCG GCGGCAGTGC CTAACTTACT GAGAATCATG CCTGCTGTGA TGAGCCCTTG GAAACCATCA 001840
001841 GGACTGGATG GTAGGGGTCC TGAGAGGATT GGGGGAGGAG GCCTTGATAT GACAGAGTGG ACAGAGGCCG TGGAACCCAG 001920
001921 GACAGCCAGC CTGCTCCACA ATCCTCATCC CCACAGACCT TCATGTGTGG CTCCTAAATA AGAGGAAACC CACTCCTGAT 002000
002001 AAGTCAGGGG CTTTGAAAAG TGATTTTGTT TAAATGGTGC AAACAAGCAA GCCAATCTTG GGGAGACAGG GCTAAACTTA 002080
002081 AGTCCTTTAA GAAGCTCTAC ATACTGACAA GATTCTAGTT CCCTTCCACC TTATATGCTG CAAAGTAAAA AGTATCACTG 002160
002161 AATGAGAAAA TCAGCATAAA GAAGCCCAAT AATGTCTGCC TGAGTTTCCC CTATGATGAC TTTTGGTACT TTTTGGGAAA 002240
002241 CATTAAGTAT GAAGTTATTT CAAAATAATT TTTTGGTGCC TCTGCTTGGT GATGCCTTAA ACTCTGGGTA AGAGAAACAC 002320
002321 CAGGTGCCTG TCAGGAGATG GCCTTTTCCA GGTTTCTGGT TAAGCTACAA ACAGCTAACT GGCTGCTGTC ATCAAAATAA 002400
002401 AAGCTTTCTG AAGGTGGAGG CATCTGATAC CCAGAGTGCT GCTATCAGCC GGCACGGTGG GCCGCTGGGT GGCAGGAGCG 002480
002481 TCGAGAAGGC CAGCTCGCTT CCTATCTGGG ATTCAGAATC AGCTATGGAA ACTTGAGAGA CCTAGAGAAA ATAACTTCTT 002560
002561 TCACTTTGAA CTGATTCTTT GCTTCATAAG AAAAGTATTA TCCAGCCACA AAAATGGTCA AAATTCAGAT CTACAAAAGC 002640
002641 CTGTCAGGCA GAAACTGACC CCACTTAGGC CACGCCAATG AGCAAGTCAT CAAAGCAGCC AAGACAGGTC CTGTGGGGGC 002720
002721 CACCCATGCA CAGGGCCCAG CCTCGGGTCC TAACCCCGCC TATGCTTTCC GCCACCATAA AGAGGCCCAT CTGGGTAAGA 002800
002801 CCTGTCCCGC CTGCTGTGGG GTATTAGGGC AGATGGGGTC TGAGGGGTCT GAGGGCTCTG AGAGCAGCTG GCAGCTCAAG 002880
002881 GACATCCGGA GTTGGAGGAT GGAGCAATGC AGGCCCTTGT GGTAAAGACA GTCCTGCAGC CGCGCAGGCA GGGATGCTGC 002960
002961 AAGTGGAGTG CCAGGCGGGT GCGGAGCCCT GTGGGACTGT GGAGGGGTCA GAGGGAAGCC AGGATTTTGG GGTCTCTGAG 003040
003041 AGTTTGGAGA AGGGGAAGAA GATTAAAGCT TGTTTCAAAA
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