Difference between revisions of "ENST00000452431.1"
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sequence = <dnaseq>AATAGCCTTTCACCTCTGGAGAGCTGGAGTCAATTCCGGCGAATCCGGTCCCGCCGTGCATCATGGCAAAGTGAGACTGTTGTCTTGCCACCTGGTTCAGCTTGGCCAGATCGAGCGGAGAAATGAGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGGTGAGACGTGGTCTTGTAACACAGTGGTTAAGAATGTGACTTTGGAGCCAGCCTGCTAGGGGCTGAATTCTGACTCAGCCATTTACTAACTGTGTGACCTTAGGTCACAGAATTTTCCACACTCCTTGACAGAGGTGCTTAACCCTTATCCATCAGCATTCTCAGACAGCACCTCCGGTTAGGGACAGT</dnaseq>| | sequence = <dnaseq>AATAGCCTTTCACCTCTGGAGAGCTGGAGTCAATTCCGGCGAATCCGGTCCCGCCGTGCATCATGGCAAAGTGAGACTGTTGTCTTGCCACCTGGTTCAGCTTGGCCAGATCGAGCGGAGAAATGAGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGGTGAGACGTGGTCTTGTAACACAGTGGTTAAGAATGTGACTTTGGAGCCAGCCTGCTAGGGGCTGAATTCTGACTCAGCCATTTACTAACTGTGTGACCTTAGGTCACAGAATTTTCCACACTCCTTGACAGAGGTGCTTAACCCTTATCCATCAGCATTCTCAGACAGCACCTCCGGTTAGGGACAGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:lnc-C2orf42-3]][[Category:NONHSAG028093]] | + | [[Category:Antisense]][[Category:lnc-C2orf42-3]][[Category:NONHSAG028093]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:03, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000452431.1 |
| Source |
Gencode19 |
| Same with |
lnc-C2orf42-3:1,NONHSAT071395 |
| Classification |
antisense |
| Length |
542 nt |
| Genomic location |
chr2-:70223935..70315686 |
| Exon number |
5 |
| Exons |
70223935..70224020,70278335..70278437,70310670..70310819,70312679..70312756,70315562..70315686 |
| Genome context |
|
| Sequence |
000001 AATAGCCTTT CACCTCTGGA GAGCTGGAGT CAATTCCGGC GAATCCGGTC CCGCCGTGCA TCATGGCAAA GTGAGACTGT 000080
000081 TGTCTTGCCA CCTGGTTCAG CTTGGCCAGA TCGAGCGGAG AAATGAGGAA GACAAACATA AAGATGAAGT GCTTAATTCA 000160 000161 AGGTCACACA ATGTCGGGGA TGGACCTCCA GATTTCCTTA CTGACCTGCA TTATCTTGTG GATACCTGAG TGAATTCCAC 000240 000241 ACCACCCATT TTATAGATGA AACCACTGAG ACATGGAGCA ATTGACTGAG TAGTCACTGC CCCACCCCTG CCTGGAGCCT 000320 000321 CACACATGAC TCGCCTCCTC TCAGTGACCA CAGGTGAGAC GTGGTCTTGT AACACAGTGG TTAAGAATGT GACTTTGGAG 000400 000401 CCAGCCTGCT AGGGGCTGAA TTCTGACTCA GCCATTTACT AACTGTGTGA CCTTAGGTCA CAGAATTTTC CACACTCCTT 000480 000481 GACAGAGGTG CTTAACCCTT ATCCATCAGC ATTCTCAGAC AGCACCTCCG GTTAGGGACA GT |
Predicted Small Protein
| Name | ENST00000452431.1_smProtein_122:232 |
| Length | 37 |
| Molecular weight | 4161.117 |
| Aromaticity | 0.0277777777778 |
| Instability index | 62.8277777778 |
| Isoelectric point | 8.84197998047 |
| Runs | 7 |
| Runs residual | 0.013986013986 |
| Runs probability | 0.0229010523128 |
| Amino acid sequence | MRKTNIKMKCLIQGHTMSGMDLQISLLTCIILWIPE |
| Secondary structure | LLLLLLEEEHHHLLLLLLHHHHHHHHHHHHEEELLL |
| PRMN | - |
| PiMo | - |
