Difference between revisions of "ENST00000453517.1"
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[[Category:Overlapping(AS)]] | [[Category:Overlapping(AS)]] | ||
| − | [[Category:Antisense]][[Category:lnc-FAM171B-1]] | + | [[Category:Antisense]][[Category:lnc-FAM171B-1]][[Category:NONHSAG030059]][[Category:ENSG00000224063.1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:05, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000453517.1 |
| Source |
Gencode19 |
| Same with |
lnc-FAM171B-1:1,NONHSAT076007 |
| Classification |
overlapping(AS),antisense |
| Length |
802 nt |
| Genomic location |
chr2+:187867947..188392007 |
| Exon number |
4 |
| Exons |
187867947..187868092,188056562..188056658,188364233..188364332,188391549..188392007 |
| Genome context |
|
| Sequence |
000001 GAGGTCAGGT CCGCCTCATC AGCTATGAAG TCTGTGAATC CTGGGAGAAT CAGGAAGTCG TCGTAGGTGA GGCAGTCGGC 000080
000081 GCTGGCAAAG AGCTGCTGCG CGGGGAGCCA GTTATCGGGC ACATAGTCGG TGCCGCCCCT GATCAGCCAT GTGAAGACCA 000160 000161 TGATTGCTTT CCCTTCAGCC TTCCACCTTT GTAAGTTTCC TGAGGCCTCC CCAGAAGCAG AATCCTGCAT AGTCTGCAGA 000240 000241 ACTGATTTTA GAATGCCAAG CTGACATTTT GAGTTTTTAT GAGAAACCAG AAAATTTGGT GTGAAGACCC TAAGTGGTGT 000320 000321 GTCTGACTTA CAGCAGGCCC ACACTGCTGA TTTATGGTGT ACCAGTGGAA GACAGGAGAG ACAAAACCTG ACAACCAGAA 000400 000401 AAGAAAAAAA AATAAATTGA AGAATCTTTC TAATTTTCTG CTCAGCAGTG GCTAATGTTG TTGTCCTCTT GTTGTTGATT 000480 000481 ACTTCCATCC ACTCAATTTG GCTGATCTCC AGGGGGCCTA CCCTTCTGTC CACTAAAACC TGGCAGCCTG TTTTTTGTTT 000560 000561 TGTTTTATCT TTAACTGATG TGCTTTCATT TTGTTTTATT CTATTTTGAT TGTTTTTCAT TTTGGGTGAG TTTACAGCAC 000640 000641 ACTAATACCA AAGAAAATGA ATAAAGAAAA CATTAGAATA AAACTATGTT GGAGGAGAAG GGGAACAACA AACTCTACAG 000720 000721 GAATTCTGAT AGCTTTCTAT TTCCTTTTTT TGAAGTTTAC TTTTTGCAAG TAGTATTCTC AATTGTAAAT CCACAAAATA 000800 000801 TT |
Predicted Small Protein
| Name | ENST00000453517.1_smProtein_656:772 |
| Length | 39 |
| Molecular weight | 4631.5372 |
| Aromaticity | 0.184210526316 |
| Instability index | 61.2107894737 |
| Isoelectric point | 10.5573120117 |
| Runs | 8 |
| Runs residual | 0.0379155124654 |
| Runs probability | 0.039182564918 |
| Amino acid sequence | MNKENIRIKLCWRRRGTTNSTGILIAFYFLFLKFTFCK |
| Secondary structure | LLLLLEEEHHHHHLLLLLLHHHHHHHHHHHHHHLEEEL |
| PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
| PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTii |
