Difference between revisions of "ENST00000456353.1"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (4 intermediate revisions by 3 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>AGCATTGCAAACACGCTCCCCCCCAAACCACAAACGCGCCCCCACACACTCGCTTACTTTCCCTCACAAAGATGCCCGCTTACACGGCCACAGCAGGCACGCTCAGAGACACGCAGTTACACACACACATCGCTGTACACAACCCCACATACAATCAAAAAACAAAACACGAAACGTTCCCCTGGGCACTAAATCCTCACGTTAACGTACACACACAAACACACGCCCTCCTCTCCCACTTCCTCTTCCATACCCCTTCCTCGAGGCCCCCCACCCCTGATTTTCGGCACCCCCAGTCCCAATCATAATTGGCGCCCGCGCAGCCCTCTTTGGACACACACGCGCCGCCCACGCACGCGCTCCCCTCCCCGGCAGGCGGGGGCGGCTTCGGCCGGGAGCCGGCGGAGCCCGCTTCGGATTCCAGGTGTGGCAGTGACTCCGCGCTCCACGTTTTGCAGGCTGCCACCGTGTCGGAGGCGAGGCGAGGAAGGGAGCTGGAATAACAAAGGTGGCAGCTGAGCATCCCTGGAGAGGGTGGGTGGTATGAAAGCACTTCCAGACCTCTAGGGACACCAGGGAGTCATGGTCCCAGCACATTGCTGTGTGATTGAGCCCCTCCTCAGCCTGTGGGTGGCCTAAGTTCACAGGGAGGTAATGGGGTAGATTGGATACCTCTGGGGTCTTGGAAGAAGCTATGACTTATTTACTGTCTACTATGTGAGTTTTGGGCATCCTTCTATCAGCCCTTATCCCAGGGCAGGAAGAACAGCCTTGATCCTGGATCCCAGGCACAGCTGGGTGTCAGACCTGGAGGAGAAGCTCCCAGAGTGACCAAGATAGAATCGGCATGCAGCTGAAGCCACTTGCTCAGAGCCGCACAGCAAGCCCACCACCCTGAACCTCCAGATTACCAACTCAGCATTGTGTCCTGACAGTGTCATCATAGATGGTCAACACCGTCACCTGGGCAGCACTGAAGCCCAGAGCGGGAGAGACTGGCTCAAGACCATGGGCCCTGACATTCTCCAGCTTTCATGGTGTTCCTGCAATCCAAGTGCCGCTTATCTCTCTACAGGTCCACCAGATGACCGGCTGGCCTCCTAATTGGGCTTCCTGCATTCCTGCCTGTGCTCGGAGCTCCCTTCTCCACTTGCCTGCTGGAGGAGGTTTACAAACAAAATCAGATCATGGCACTCCCCTGGGGCCCTGCATCCTGTGGCCAGCAGGTCTTGGAAACGCCCCTGTACCCCAGAAACTTCCTGATCAGTCCCTGGTCAGTGTATATCATGCTTCCTGTGACATGACATCAACTTTTCAGTGACTTCCACTGGTTTTGGCCCAGCTCGAAGAGCCTGACACCTCTGCAGGGAATTCTACCAGGGAGCTCAGGAGGGGGAATTGCACTGAAGATTTGTCCCATCGTGAAGCAAGAGCACTGGAACTTACACTCCACCATCAGGCCCTGTCACAGGAGAACAAAGAAGGAAGGCAGAGGAGATCATGCTCCGGCCAGCAGGGAATCTCCATTTTTTTCAGCCTCATACCTTGGAAAGTACAAAGGAGTGAGAGCTGGGACTACCAGCCAGAGGGTTCATGGAGGTAGTGGGAGGGGAAGATGGGTTCTGCATGGAGCCACTCCAGGGACTTTTCTTCTGTCTCACAGCCTGACAATCACCTCTAGCTGTTCTCAGTCCCATTCTCATCAATGACCTCGTCTCCTGATTTTGTACAATATCTAGGTGACCTTCTCTTCTTTCCATCTTCAAACGCTTGATCATTGATGCTCCCTTTTCTCTTCTCTCTCCTCCTGGGAAAAGAGAAGGACCAACATCCCCCTTTCCCTTCCTCCTGTGCTGTCCCGACCCCTCTGAGACCTGGCTCTAGCAGTAAGTCCCTCTCTCTTCTGCAGCACCAGCCTCTGCCCATCCCTGCCCTCTGCACACAAAGCTCTCACATTGTCTGCACTTTAAGAACTTTTGTGGCAAACCCTGGCAAATCCTGCCACTTGTTTCCACTCTTCTCAAATGGCTTTGAGGTCATCATTGACCTATCCCATTTGACCCTGTCCTGTATCTGATGTTGTACCCTTTCTCCTTGATCCCACTCTGGCAACTCTCCCACTCCCCTTTCTTGGATCAACTGTCTTGCTCCTCAGTCTTGATCAATGCCTCCTTCTCTCTCTTTAGCCTTGGCCCTTTTTGGCCAGGGAAATAAATGTGAAATACATAAAGCTTCATTTTATCTTATGATTATAGCTATGTTGATGTTACCCAAGACCTAAAAGTCACACTCTCTAATTACACTTCCCTCCTGTGTTCTGGGTCCTCTTGGACCAGTCCTTACTCTGGCTCCCCTCCTGGATGTCTCCCAGACTTCTAATTAGAATTACTGTTTCCTATATCAAGCTAATTATCTTTCCCACCAACCTCCTCCATCCTTGGGTGAAAGCATCACTTGGTTGCAAAAGTCAGAAATCTGGGTTTCATTCTTGCGGTAGGTAGAATAATGCCCCCAGGCCCCAGGTTTTGACATCCGAATCCCTGGGACTTTGCAGATGTGATTCAGTTTAGGATTTTGAGATGGGGAGATTATCTGGGAGAGCCTGATGTCATCATAAGGTTCTTATAAGAGGGAGGCAGGAGGGTTAGAGTGAGTAGTAAGAGATGCAACAGTGGAAGCAAGAGGTTGGGGTGATGTGGCCACAAGCCCAGGAGTGCTGACAGACATCAGAAGCTGGAAGGGACAAGGAATGGTTTCTCCTCTGGAGCCTCCAGAAAGAACCAGCCCTGCTGACACCTTGATTTTAGCCTTGGAAGACTCATTTTGGACTTCTGACCTTGAACGTTGTAAGAGAATAAATTTACATATTTTAAACTGG</dnaseq>| | sequence = <dnaseq>AGCATTGCAAACACGCTCCCCCCCAAACCACAAACGCGCCCCCACACACTCGCTTACTTTCCCTCACAAAGATGCCCGCTTACACGGCCACAGCAGGCACGCTCAGAGACACGCAGTTACACACACACATCGCTGTACACAACCCCACATACAATCAAAAAACAAAACACGAAACGTTCCCCTGGGCACTAAATCCTCACGTTAACGTACACACACAAACACACGCCCTCCTCTCCCACTTCCTCTTCCATACCCCTTCCTCGAGGCCCCCCACCCCTGATTTTCGGCACCCCCAGTCCCAATCATAATTGGCGCCCGCGCAGCCCTCTTTGGACACACACGCGCCGCCCACGCACGCGCTCCCCTCCCCGGCAGGCGGGGGCGGCTTCGGCCGGGAGCCGGCGGAGCCCGCTTCGGATTCCAGGTGTGGCAGTGACTCCGCGCTCCACGTTTTGCAGGCTGCCACCGTGTCGGAGGCGAGGCGAGGAAGGGAGCTGGAATAACAAAGGTGGCAGCTGAGCATCCCTGGAGAGGGTGGGTGGTATGAAAGCACTTCCAGACCTCTAGGGACACCAGGGAGTCATGGTCCCAGCACATTGCTGTGTGATTGAGCCCCTCCTCAGCCTGTGGGTGGCCTAAGTTCACAGGGAGGTAATGGGGTAGATTGGATACCTCTGGGGTCTTGGAAGAAGCTATGACTTATTTACTGTCTACTATGTGAGTTTTGGGCATCCTTCTATCAGCCCTTATCCCAGGGCAGGAAGAACAGCCTTGATCCTGGATCCCAGGCACAGCTGGGTGTCAGACCTGGAGGAGAAGCTCCCAGAGTGACCAAGATAGAATCGGCATGCAGCTGAAGCCACTTGCTCAGAGCCGCACAGCAAGCCCACCACCCTGAACCTCCAGATTACCAACTCAGCATTGTGTCCTGACAGTGTCATCATAGATGGTCAACACCGTCACCTGGGCAGCACTGAAGCCCAGAGCGGGAGAGACTGGCTCAAGACCATGGGCCCTGACATTCTCCAGCTTTCATGGTGTTCCTGCAATCCAAGTGCCGCTTATCTCTCTACAGGTCCACCAGATGACCGGCTGGCCTCCTAATTGGGCTTCCTGCATTCCTGCCTGTGCTCGGAGCTCCCTTCTCCACTTGCCTGCTGGAGGAGGTTTACAAACAAAATCAGATCATGGCACTCCCCTGGGGCCCTGCATCCTGTGGCCAGCAGGTCTTGGAAACGCCCCTGTACCCCAGAAACTTCCTGATCAGTCCCTGGTCAGTGTATATCATGCTTCCTGTGACATGACATCAACTTTTCAGTGACTTCCACTGGTTTTGGCCCAGCTCGAAGAGCCTGACACCTCTGCAGGGAATTCTACCAGGGAGCTCAGGAGGGGGAATTGCACTGAAGATTTGTCCCATCGTGAAGCAAGAGCACTGGAACTTACACTCCACCATCAGGCCCTGTCACAGGAGAACAAAGAAGGAAGGCAGAGGAGATCATGCTCCGGCCAGCAGGGAATCTCCATTTTTTTCAGCCTCATACCTTGGAAAGTACAAAGGAGTGAGAGCTGGGACTACCAGCCAGAGGGTTCATGGAGGTAGTGGGAGGGGAAGATGGGTTCTGCATGGAGCCACTCCAGGGACTTTTCTTCTGTCTCACAGCCTGACAATCACCTCTAGCTGTTCTCAGTCCCATTCTCATCAATGACCTCGTCTCCTGATTTTGTACAATATCTAGGTGACCTTCTCTTCTTTCCATCTTCAAACGCTTGATCATTGATGCTCCCTTTTCTCTTCTCTCTCCTCCTGGGAAAAGAGAAGGACCAACATCCCCCTTTCCCTTCCTCCTGTGCTGTCCCGACCCCTCTGAGACCTGGCTCTAGCAGTAAGTCCCTCTCTCTTCTGCAGCACCAGCCTCTGCCCATCCCTGCCCTCTGCACACAAAGCTCTCACATTGTCTGCACTTTAAGAACTTTTGTGGCAAACCCTGGCAAATCCTGCCACTTGTTTCCACTCTTCTCAAATGGCTTTGAGGTCATCATTGACCTATCCCATTTGACCCTGTCCTGTATCTGATGTTGTACCCTTTCTCCTTGATCCCACTCTGGCAACTCTCCCACTCCCCTTTCTTGGATCAACTGTCTTGCTCCTCAGTCTTGATCAATGCCTCCTTCTCTCTCTTTAGCCTTGGCCCTTTTTGGCCAGGGAAATAAATGTGAAATACATAAAGCTTCATTTTATCTTATGATTATAGCTATGTTGATGTTACCCAAGACCTAAAAGTCACACTCTCTAATTACACTTCCCTCCTGTGTTCTGGGTCCTCTTGGACCAGTCCTTACTCTGGCTCCCCTCCTGGATGTCTCCCAGACTTCTAATTAGAATTACTGTTTCCTATATCAAGCTAATTATCTTTCCCACCAACCTCCTCCATCCTTGGGTGAAAGCATCACTTGGTTGCAAAAGTCAGAAATCTGGGTTTCATTCTTGCGGTAGGTAGAATAATGCCCCCAGGCCCCAGGTTTTGACATCCGAATCCCTGGGACTTTGCAGATGTGATTCAGTTTAGGATTTTGAGATGGGGAGATTATCTGGGAGAGCCTGATGTCATCATAAGGTTCTTATAAGAGGGAGGCAGGAGGGTTAGAGTGAGTAGTAAGAGATGCAACAGTGGAAGCAAGAGGTTGGGGTGATGTGGCCACAAGCCCAGGAGTGCTGACAGACATCAGAAGCTGGAAGGGACAAGGAATGGTTTCTCCTCTGGAGCCTCCAGAAAGAACCAGCCCTGCTGACACCTTGATTTTAGCCTTGGAAGACTCATTTTGGACTTCTGACCTTGAACGTTGTAAGAGAATAAATTTACATATTTTAAACTGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-ZCCHC24-3]][[Category:NONHSAG006320]][[Category:ENSG00000224596.3]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:14, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000456353.1 |
| Source |
Gencode19 |
| Same with |
lnc-ZCCHC24-3:2,NONHSAT015089 |
| Classification |
intergenic |
| Length |
2878 nt |
| Genomic location |
chr10-:80703085..80827652 |
| Exon number |
10 |
| Exons |
80703085..80704504,80705669..80705746,80721011..80721164,80721656..80721806,80722581..80722643,80808531..80808689,80814353..80814485,80825504..80825576,80826205..80826343,80827145..80827652 |
| Genome context |
|
| Sequence |
000001 AGCATTGCAA ACACGCTCCC CCCCAAACCA CAAACGCGCC CCCACACACT CGCTTACTTT CCCTCACAAA GATGCCCGCT 000080
000081 TACACGGCCA CAGCAGGCAC GCTCAGAGAC ACGCAGTTAC ACACACACAT CGCTGTACAC AACCCCACAT ACAATCAAAA 000160 000161 AACAAAACAC GAAACGTTCC CCTGGGCACT AAATCCTCAC GTTAACGTAC ACACACAAAC ACACGCCCTC CTCTCCCACT 000240 000241 TCCTCTTCCA TACCCCTTCC TCGAGGCCCC CCACCCCTGA TTTTCGGCAC CCCCAGTCCC AATCATAATT GGCGCCCGCG 000320 000321 CAGCCCTCTT TGGACACACA CGCGCCGCCC ACGCACGCGC TCCCCTCCCC GGCAGGCGGG GGCGGCTTCG GCCGGGAGCC 000400 000401 GGCGGAGCCC GCTTCGGATT CCAGGTGTGG CAGTGACTCC GCGCTCCACG TTTTGCAGGC TGCCACCGTG TCGGAGGCGA 000480 000481 GGCGAGGAAG GGAGCTGGAA TAACAAAGGT GGCAGCTGAG CATCCCTGGA GAGGGTGGGT GGTATGAAAG CACTTCCAGA 000560 000561 CCTCTAGGGA CACCAGGGAG TCATGGTCCC AGCACATTGC TGTGTGATTG AGCCCCTCCT CAGCCTGTGG GTGGCCTAAG 000640 000641 TTCACAGGGA GGTAATGGGG TAGATTGGAT ACCTCTGGGG TCTTGGAAGA AGCTATGACT TATTTACTGT CTACTATGTG 000720 000721 AGTTTTGGGC ATCCTTCTAT CAGCCCTTAT CCCAGGGCAG GAAGAACAGC CTTGATCCTG GATCCCAGGC ACAGCTGGGT 000800 000801 GTCAGACCTG GAGGAGAAGC TCCCAGAGTG ACCAAGATAG AATCGGCATG CAGCTGAAGC CACTTGCTCA GAGCCGCACA 000880 000881 GCAAGCCCAC CACCCTGAAC CTCCAGATTA CCAACTCAGC ATTGTGTCCT GACAGTGTCA TCATAGATGG TCAACACCGT 000960 000961 CACCTGGGCA GCACTGAAGC CCAGAGCGGG AGAGACTGGC TCAAGACCAT GGGCCCTGAC ATTCTCCAGC TTTCATGGTG 001040 001041 TTCCTGCAAT CCAAGTGCCG CTTATCTCTC TACAGGTCCA CCAGATGACC GGCTGGCCTC CTAATTGGGC TTCCTGCATT 001120 001121 CCTGCCTGTG CTCGGAGCTC CCTTCTCCAC TTGCCTGCTG GAGGAGGTTT ACAAACAAAA TCAGATCATG GCACTCCCCT 001200 001201 GGGGCCCTGC ATCCTGTGGC CAGCAGGTCT TGGAAACGCC CCTGTACCCC AGAAACTTCC TGATCAGTCC CTGGTCAGTG 001280 001281 TATATCATGC TTCCTGTGAC ATGACATCAA CTTTTCAGTG ACTTCCACTG GTTTTGGCCC AGCTCGAAGA GCCTGACACC 001360 001361 TCTGCAGGGA ATTCTACCAG GGAGCTCAGG AGGGGGAATT GCACTGAAGA TTTGTCCCAT CGTGAAGCAA GAGCACTGGA 001440 001441 ACTTACACTC CACCATCAGG CCCTGTCACA GGAGAACAAA GAAGGAAGGC AGAGGAGATC ATGCTCCGGC CAGCAGGGAA 001520 001521 TCTCCATTTT TTTCAGCCTC ATACCTTGGA AAGTACAAAG GAGTGAGAGC TGGGACTACC AGCCAGAGGG TTCATGGAGG 001600 001601 TAGTGGGAGG GGAAGATGGG TTCTGCATGG AGCCACTCCA GGGACTTTTC TTCTGTCTCA CAGCCTGACA ATCACCTCTA 001680 001681 GCTGTTCTCA GTCCCATTCT CATCAATGAC CTCGTCTCCT GATTTTGTAC AATATCTAGG TGACCTTCTC TTCTTTCCAT 001760 001761 CTTCAAACGC TTGATCATTG ATGCTCCCTT TTCTCTTCTC TCTCCTCCTG GGAAAAGAGA AGGACCAACA TCCCCCTTTC 001840 001841 CCTTCCTCCT GTGCTGTCCC GACCCCTCTG AGACCTGGCT CTAGCAGTAA GTCCCTCTCT CTTCTGCAGC ACCAGCCTCT 001920 001921 GCCCATCCCT GCCCTCTGCA CACAAAGCTC TCACATTGTC TGCACTTTAA GAACTTTTGT GGCAAACCCT GGCAAATCCT 002000 002001 GCCACTTGTT TCCACTCTTC TCAAATGGCT TTGAGGTCAT CATTGACCTA TCCCATTTGA CCCTGTCCTG TATCTGATGT 002080 002081 TGTACCCTTT CTCCTTGATC CCACTCTGGC AACTCTCCCA CTCCCCTTTC TTGGATCAAC TGTCTTGCTC CTCAGTCTTG 002160 002161 ATCAATGCCT CCTTCTCTCT CTTTAGCCTT GGCCCTTTTT GGCCAGGGAA ATAAATGTGA AATACATAAA GCTTCATTTT 002240 002241 ATCTTATGAT TATAGCTATG TTGATGTTAC CCAAGACCTA AAAGTCACAC TCTCTAATTA CACTTCCCTC CTGTGTTCTG 002320 002321 GGTCCTCTTG GACCAGTCCT TACTCTGGCT CCCCTCCTGG ATGTCTCCCA GACTTCTAAT TAGAATTACT GTTTCCTATA 002400 002401 TCAAGCTAAT TATCTTTCCC ACCAACCTCC TCCATCCTTG GGTGAAAGCA TCACTTGGTT GCAAAAGTCA GAAATCTGGG 002480 002481 TTTCATTCTT GCGGTAGGTA GAATAATGCC CCCAGGCCCC AGGTTTTGAC ATCCGAATCC CTGGGACTTT GCAGATGTGA 002560 002561 TTCAGTTTAG GATTTTGAGA TGGGGAGATT ATCTGGGAGA GCCTGATGTC ATCATAAGGT TCTTATAAGA GGGAGGCAGG 002640 002641 AGGGTTAGAG TGAGTAGTAA GAGATGCAAC AGTGGAAGCA AGAGGTTGGG GTGATGTGGC CACAAGCCCA GGAGTGCTGA 002720 002721 CAGACATCAG AAGCTGGAAG GGACAAGGAA TGGTTTCTCC TCTGGAGCCT CCAGAAAGAA CCAGCCCTGC TGACACCTTG 002800 002801 ATTTTAGCCT TGGAAGACTC ATTTTGGACT TCTGACCTTG AACGTTGTAA GAGAATAAAT TTACATATTT TAAACTGG |
Predicted Small Protein
| Name | ENST00000456353.1_smProtein_71:307 |
| Length | 79 |
| Molecular weight | 8898.7877 |
| Aromaticity | 0.0897435897436 |
| Instability index | 47.6141025641 |
| Isoelectric point | 9.52056884766 |
| Runs | 8 |
| Runs residual | 0.0311131957473 |
| Runs probability | 0.0448021550963 |
| Amino acid sequence | MPAYTATAGTLRDTQLHTHIAVHNPTYNQKTKHETFPWALNPHVNVHTQTHALLSHFLFH TPSSRPPTPDFRHPQSQS |
| Secondary structure | LLLEEELLLLLLLLLLEEEEEEELLLLLLLLLLLLLLLLLLLLLLEEHHHHHHHHHHHLL LLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
