Difference between revisions of "ENST00000470523.2"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>CCTACCTTTTGTTATAGGAGTGTTGGCCATGACCCTTATGACGGATGGGGAAAGACATCACATCCTTCCTCTCCTACTTGCAGAAATATGAATACTCAAGGTTAATGTCAAGGACGTTTGTTCCACTTCGCATCTGAATTGACAAGGAATGGACTCTTCAGCTCTGACAGCAAATCTCTCTTCAGAAGTCTGGAAAAGCAGAAAGAGAAGAATGAAGAAATGTCCACAAAACTGCTCCTATCCTTTACACCACATAGGACCAAACTCTTACCTTTCATCAGTTTTCAGTTTGTACATTAATGTATCCTGGTGAAGTTCCTCAACCACTTCTGCAACATTCAATTTTAATTTATATTTGCCCACATCATTTCATTTGTGATTTGGACACATGCAGGCTACTGAATATAATGGATACAAATCTCTCACTGATTCCCTTGAGCTATTTCATAGTTCTGCTTTCACAGGCAGGAGACAGTGAAGAAATAATGATTCAGTTATTTCTTAAAGATTTCACAATTCTACATTCAATAAAGAATATGTGAATTCCTGGAAGTTATG</dnaseq>| | sequence = <dnaseq>CCTACCTTTTGTTATAGGAGTGTTGGCCATGACCCTTATGACGGATGGGGAAAGACATCACATCCTTCCTCTCCTACTTGCAGAAATATGAATACTCAAGGTTAATGTCAAGGACGTTTGTTCCACTTCGCATCTGAATTGACAAGGAATGGACTCTTCAGCTCTGACAGCAAATCTCTCTTCAGAAGTCTGGAAAAGCAGAAAGAGAAGAATGAAGAAATGTCCACAAAACTGCTCCTATCCTTTACACCACATAGGACCAAACTCTTACCTTTCATCAGTTTTCAGTTTGTACATTAATGTATCCTGGTGAAGTTCCTCAACCACTTCTGCAACATTCAATTTTAATTTATATTTGCCCACATCATTTCATTTGTGATTTGGACACATGCAGGCTACTGAATATAATGGATACAAATCTCTCACTGATTCCCTTGAGCTATTTCATAGTTCTGCTTTCACAGGCAGGAGACAGTGAAGAAATAATGATTCAGTTATTTCTTAAAGATTTCACAATTCTACATTCAATAAAGAATATGTGAATTCCTGGAAGTTATG</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-PDCD10-1]][[Category:NONHSAG036594]][[Category:ENSG00000244706.2]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:21, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000470523.2 |
Source |
Gencode19 |
Same with |
lnc-PDCD10-1:1,NONHSAT093108 |
Classification |
intergenic |
Length |
558 nt |
Genomic location |
chr3-:167584288..167588765 |
Exon number |
3 |
Exons |
167584288..167584675,167588045..167588102,167588654..167588765 |
Genome context |
|
Sequence |
000001 CCTACCTTTT GTTATAGGAG TGTTGGCCAT GACCCTTATG ACGGATGGGG AAAGACATCA CATCCTTCCT CTCCTACTTG 000080
000081 CAGAAATATG AATACTCAAG GTTAATGTCA AGGACGTTTG TTCCACTTCG CATCTGAATT GACAAGGAAT GGACTCTTCA 000160 000161 GCTCTGACAG CAAATCTCTC TTCAGAAGTC TGGAAAAGCA GAAAGAGAAG AATGAAGAAA TGTCCACAAA ACTGCTCCTA 000240 000241 TCCTTTACAC CACATAGGAC CAAACTCTTA CCTTTCATCA GTTTTCAGTT TGTACATTAA TGTATCCTGG TGAAGTTCCT 000320 000321 CAACCACTTC TGCAACATTC AATTTTAATT TATATTTGCC CACATCATTT CATTTGTGAT TTGGACACAT GCAGGCTACT 000400 000401 GAATATAATG GATACAAATC TCTCACTGAT TCCCTTGAGC TATTTCATAG TTCTGCTTTC ACAGGCAGGA GACAGTGAAG 000480 000481 AAATAATGAT TCAGTTATTT CTTAAAGATT TCACAATTCT ACATTCAATA AAGAATATGT GAATTCCTGG AAGTTATG |
Predicted Small Protein
Name | ENST00000470523.2_smProtein_299:541 |
Length | 81 |
Molecular weight | 9232.8679 |
Aromaticity | 0.0875 |
Instability index | 42.14125 |
Isoelectric point | 4.94000244141 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0265378500673 |
Amino acid sequence | MYPGEVPQPLLQHSILIYICPHHFICDLDTCRLLNIMDTNLSLIPLSYFIVLLSQAGDSE EIMIQLFLKDFTILHSIKNM |
Secondary structure | LLLLLLLLHHHLLEEEEEELLLLEELLLLHHHHHHHHLLLLLLLLHHHHHHHHHHLLLHH HHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii iiiiiiiiiiiiiiiiiiii |