Difference between revisions of "ENST00000477249.2"
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sequence = <dnaseq>GGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTT</dnaseq>| | sequence = <dnaseq>GGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000175061.13]] | + | [[Category:Intergenic]][[Category:ENSG00000175061.13]][[Category:Transcripts]] |
Latest revision as of 16:23, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000477249.2 |
| Source |
Gencode19 |
| Same with |
, |
| Classification |
intergenic |
| Length |
891 nt |
| Genomic location |
chr17+:16342371..16345280 |
| Exon number |
5 |
| Exons |
16342371..16342374,16342641..16342728,16343425..16343567,16344388..16344444,16344682..16345280 |
| Genome context |
|
| Sequence |
000001 GGAGGGCCAC ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC 000080
000081 CGAGAGAACT GGTCAAGTCT TCACCACTTG CTGGTTCCCA GGAGTAAACT TGTTTGAACG GTGACCTAAT TGCTATATTC 000160 000161 ACCTAGGTTG CAAATTCGTG AAGAATCAGC ATCATGTTTG GCAGCTGAGT ATTGGAGCCA GGAGCCTGCC ATGAGGTTTT 000240 000241 GAGAACAGAG TGCTGTTTTA GAGCTGGCAG CAGCATCTCA GCCCAAGAGA AGGTTATATT CCCAGAGGAT GTCAGTCCCA 000320 000321 AGGACCAGTA GCTGCCATCA GTTTGGATTC TGAAAACTAA CTGGCATCAA CACTGGGTGT AGAAACATGC TTGCCTTATG 000400 000401 TATCAGAGGA CATGCTCAGC AGATCCAAGA GATATATTTG GCAACTTTTT CTAGAAAAGG CACATTGGGT ATCATTCATT 000480 000481 ACATTCTTGA GTTTTTTTGG GTTTTTTTTT TTTTTTTTGA GACAGTCTTG CTGTATTGCC CAGGCTGGAG TGTGGTGGCA 000560 000561 CAATCACAGC TCATTGCATC CTCAATCACC CAGGCCTAAG CAATCCTCCC ACCTTGTAGC TGGGACTACA GCTCACAGCA 000640 000641 CACCTGGCTA AAATTTTTTT TTTGTTGAGA CGGATTCTCT ATGTTGCCCA GGCTGGTCTC AGGCTCCTGG GCTCAGATGG 000720 000721 TCCTCCTGCC TCAGCTTCCA AAGGCACAGG CCAAGTTGTA GCTTTGTCCC TTGCCATCAT GCCCAACAAG AGGTTCTATA 000800 000801 CCTTTTAATG AATTGACTTT CATAAATTGG TTATGTTGGT GGGCAAAGTT CTTTAAGCTG GAAATTGTAA ATTCCTCCTG 000880 000881 AAATGTTTTT T |
Predicted Small Protein
| Name | ENST00000477249.2_smProtein_386:598 |
| Length | 71 |
| Molecular weight | 8064.4019 |
| Aromaticity | 0.185714285714 |
| Instability index | 42.57 |
| Isoelectric point | 6.69317626953 |
| Runs | 9 |
| Runs residual | 0.0162659123055 |
| Runs probability | 0.015692162751 |
| Amino acid sequence | MLALCIRGHAQQIQEIYLATFSRKGTLGIIHYILEFFWVFFFFFETVLLYCPGWSVVAQS QLIASSITQA |
| Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHEEELLLLEEEHHH HHHHHHHHLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooo oooooooooo |
