Difference between revisions of "ENST00000484859.1"

Latest revision as of 16:25, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	ENST00000484859.1
Source	Gencode19
Same with	lnc-FAM138A-3:1,NONHSAT000032
Classification	intergenic
Length	4860 nt
Genomic location	chr1-:141474..149707
Exon number	2
Exons	141474..143011,146386..149707
Genome context
Sequence	000001 GCCATTTCTT TTTTTTCTTT TTTTTTTTAA GATAAGAGTC TTTCTCTTGT CACCCAGGCT GGAGTGCAAT GGTGCGATTT 000080 000081 TGGCTCACTG CAACCTTCAC CTTCTGGGTT CAAGCAATTC TCCTGCCTCA GCCTCCCGAG TAGCTGGGAT TACAGGTGCC 000160 000161 CGCCACCATA CCCAGCTAAT TTTTGTATTT TTAGTAGAGA TGGGATTTCA CCATGTTGGC CAGGCTCCTC TGGAGCTCCT 000240 000241 GACCTCAGGC AATCTGCCTG CCTCAGCCTC CCAAAATTCA AGGAGTACAG ATGTGAACAA CCACGCCCGG CCTCCATTTC 000320 000321 TTTTTTGTAG TCTTTAATAA ACAGCTGCTA TCATTGCAGA CTTGCTGTTT AGGCACTTAG GAATTTTTCA CTAGAAGGCA 000400 000401 TGTAAATAAA GACCATGGGC AATTGTAATG AATTTCGCCT TCATTCTTTG ACTACATGAC TGTCCCCAGA GCTGTAACTT 000480 000481 TATTGAATTT TTTAGAAGCC ATTTAGCTAG CAACTGAGCC TAACCAGCCA CTCACTGTCA TTATTCAGTG CTCTTTTATT 000560 000561 ATTGTCTATT TCTCCTCCAA CTTGGCTACA CTCACAAAGT GATAAAAACT TGCATTTGTT TTCTTTCCTT TTCAGAGACA 000640 000641 GCGTCTTGCT CTGTTGCTTA GGCTACAGTA CAGTGACATG ATCATGGTTC ACTGTAGCCT CAAACTCCTG GGCTCAAGTG 000720 000721 GTTCTCTCAC TTCAGTCTCC CAAGTAGCTG GGACTACAGA CATGTGCCAC CATGTCCAGC TAATTTTTTA TCATAGAGAC 000800 000801 GGGATCTTGC CATGTTGCTC CGACTGGGCT CAAAACTCCT GACCTCAAGT GATCCTCCTG CCTCAGCCTC CCAAAGTGCT 000880 000881 GGGATTACAG GCAGGCATGA CCACCTGTGC CCAGCCCCCT ATTATTATTA TTTTAAATAA TAGCTTTATT AAAATATTCA 000960 000961 CATACCATTC ACTTTATTTA TTGAAATCTG CAATTCAGTA GGTTTTAGAA TATTCACAGA GCTGTGCATC GATCACCACA 001040 001041 GTCACTTTTA GAACCTTTCA TTACCCTATA GAGAAATCCA TACCCCTTAG CCACTACCTC CTACTCTCCC CACCTACCTT 001120 001121 TGCCCCCAGC CTTAGGCAAC CATTGATTAA TTTTTTTGTC ACTATAGATT TGCCTAATCT GGACAAATAG AATTGTACAA 001200 001201 TATGTGATCT TTTGTGGCTT TTTTTCCCTC TTAGCACAGT GTTTTCAAAG TTCCTTTATG TCATAGTGTG TATCAATATT 001280 001281 TCATTCCTTC TATGGCAGTA TTCCATGGTA GAGACACACT GCATTTTGTT TATCTGTTCA TCAGTTGGTG GATATTTGGG 001360 001361 TTGTTTCCAT GTATTCCATG TATTGGTCAT TATGAATAAT GCTGCTATGA AGATTGTTGT ACAAGTTTTT GTGTGGACAT 001440 001441 ATATTTTTAT TTTTCTGGGA TATATGCCTA GGAGTGAAAT TGTTGCATTA TAGGATGACT GTACATTTAG CCTTTTGAGA 001520 001521 AACTGCCAGA ATGTTTTCTA ACGTGGCTAT ACCAGTTGGG TGCAATGGCT CACACCTGTA ATCCCAGCTA CTCAGGAGGC 001600 001601 TCAGCTAGGA GGATGGCTTG AGCCCGTGAA TTCAAGACCA GCCTGGGCAA GATAGTGAAA CCCCGTCTTG ATTTTTTAAA 001680 001681 AATCCAATTA AAATGACAAG AAAAGAAATA CCCAAACAAA ATGGTTACAC AATTTTATGT TCCCACCAGT AATGTTTGTG 001760 001761 GGTTCCAATT CCTCCACATC TTCACTGACA TTTTTTTTTT CTAGATAGGG GCTTGCTCTG TCTCTCAGGC CGCAGTGCAA 001840 001841 TGATGCCATC ACAGTTCACT GCAGCCGTGA CCTCCCAGGC ACAAGTGATT CTCTCATCTC AGCCTCCTGG GTAGCTGAAA 001920 001921 ATTACAGGTG TACGCCACCA TGCCTGGCTA ATTTTTAGAT TTTTCTGTAG TGGTGGGATT TTACCATGTT GCCCAGGCTG 002000 002001 GTCTCATACT CCTGGCCTCA AGTGATCTGC CCACCTCAGC CTCCCTAAGT TCTGGAATTA CAGGCTGCCA CCATGCCCGG 002080 002081 CCTTCACCAA CATTTGCCAT TATCTGTTTT TTTTTTCTTC CTTTATACCT TAAAGCAGTA TAAGAACAAG TGTCTTCAAT 002160 002161 TATAGGAAAC AGTATAATCC CAGGGCTTTG GGAGGCTAAG ACAGGAAGAT GTCTTGATGC CAGGAGTTTT TTTTGTTGTT 002240 002241 GTTGTTTTTG TTTTTGTTGT TGTTGTTGTT GTTGACAGTC TCGCTCTGTC ACCCAGGGTG GAGTGCAGTG ATGGGGTCCA 002320 002321 CTGCAACCTC CACCTCCCAG GTTCAAGTGA TTCTCCTGCC TCAGCCTCCC GAGTAGGTGA GACTACAGGC ACACGCCACT 002400 002401 ACTGCCCAGC TGATTTTTGT ATTTTTGATA GAGTCAGAGT TTCACCGTGT TGGCCAGGCT GGTCTCGAAC TCCAGACTTC 002480 002481 AGGTGATTTG CCTGCCTTAG CTTCCCAAAG TGCTGCGATT ACAAGCATGA GCCACCATGC CCAGCCTGAT GCCAGGAGTT 002560 002561 TTAGACTAGC CTGGGCAACC TAGCAAGACC TTGTCTCTAC AGAATATTTA AAAATTAGCC AAATGTGGTG GTGCCTGTGT 002640 002641 ATAGTCTCTC TCCCTCTCTC TTTTTTTTTT CTAACTTTTT GTGACATGGT CTGGCTCTGT CACCCAGGCT GAAGTGCAGT 002720 002721 GGTGTGATCA TGGCTCACTG CAGCCTGAAA CTCCTGGGAT CAAGTGATCA ATCCTCCCAC CTCATCCTAC CAAGTAGTAG 002800 002801 GGACCACAGG TGTGTGCCAC CCAGGTCTTG CTATGTTGTC CAGGCTGGTC TTGAGCTCCT GGCCTCAAGC AATCCTCTCA 002880 002881 CCTTGGCCCC CCACAGTGCA AGGATTACAG GTATGAGCCA CCATGCCTGG CCCCTACCCT GCCTACTGAG AACCAAAGGA 002960 002961 AGGATCCAAA TTCTCCTTAG CTCAACTCGA GCCATTTCCT GATTGCTTCA TCAGCGAGGA GCTGGTTATT GGGCTGTCCA 003040 003041 GGCCTCCCAA GCAGCACAGA AATGAGGTGA AGGAGTTTTC CTGTTGCTCC ACTCTGTAAG GAGTTGGAGG GTGATGTTTA 003120 003121 CTCGTTTGCA GAGAGAGATG CCTTGTAGGC ACCTCAGGAT GGAGAGGGCC CTGATTCCAA TGTCCTTTTT TTCTTCAGAA 003200 003201 ACAGGACCTT GCCCTGTCAC TCAGGATGGA GTTCAGTGGT CCTATCATGG CTCATTATAG CCTCAAACTC CCAGGCTCAA 003280 003281 GCAATCCTAC CATGTCAGCC TTCCCAGTAG CTGGGACTAC AGCTGGATCT ACCATGAAAG ACTTGTGAAT CCAGGAAGAG 003360 003361 AGACTGACTG GGCAACATGT TATTCAGGTA CAAAAAGATT TGGACTGTAA CTTAAAAATG ATCAAATTAT GTTTCCCATG 003440 003441 CATCAGGTGC AATGGGAAGC TCTTCTGGAG AGTGAGAGAA GCTTCCAGTT AAGGTGACAT TGAAGCCAAG TCCTGAAAGA 003520 003521 TGAGGAAGAG TTGTATGAGA GTGGGGAGGG AAGGGGGAGG TGGAGGGATG GGGAATGGGC CGGGATGGGA TAGCGCAAAC 003600 003601 TGTCCGGGAA GGGAAACCAG CACTGTACAG ACCTGAACAA CGAAGATGGC ATATTCTGTT CAGGGAATGG TGAATTAAGT 003680 003681 GTGGCAGGAA TGCTTTGTAG ACACAGTAAT TTGCTTGTAT GGAATTTTGC CTGAGAGACC TCATTGCAGT TTCTGATTTT 003760 003761 TTGATGTCTT CATCCATCAC TGTCCTTGTC AAATAGTTTG GAACAGGTAT AATGATCACA ATAACCCCAA GCATAATATT 003840 003841 TCGTTAATTC TCACAGAATC ACATGTAGGT GCCACAGTTA TCCCCATTTT ATGAATGGAG TGATGAAAAC CTTAGGAATA 003920 003921 ATGAATGATT TGCGCAGGCT CACCTGGATA TTAAGACTGA GTCAAATGTT GGGTCTGGTC TGACTTTAAT GTTTGCTTTG 004000 004001 TTCATGAGCA CCACATATTG CCTCTCCTAT GCAGTTAAGC AGGTAGGTGA CAGAAAAGCC CATGTTTGTC TCTACTCACA 004080 004081 CACTTCCGAC TGAATGTACG TATGGAGTTT CTACACCAGA TTCTTCAGTG CTCTGGATAT TAACTGGGTA TCCCATGACT 004160 004161 TTATTCTGAC ACTACCTGGA GTTAGCACAG ACCCCACAAG TTAGGGGCTC AGTCCCACGA GGCCATCCTC ACTTCAGATG 004240 004241 ACAATGGCAA GTCCTAAGTT GTCACCATAC TTTTGACCAA CCTGTTACCA ATCGGGGGTT CCCGTAACTG TCTTCTTGGG 004320 004321 TTTAATAATT TGCTAGAACA GTTTACGGAA CTCAGAAAAA CAGTTTATTT TCTTTTTTTC TGAGAGAGAG GGTCTTATTT 004400 004401 TGTTGCCCAG GCTGGTGTGC AATGGTGCAG TCATAGCTCA TTGCAGCCTT GATTGTCTGG GTTCCAGTGG TTCTCCCACC 004480 004481 TCAGCCTCCC TAGTAGCTGA GACTACATGC CTGCACCACC ACATCTGGCT AGTTTCTTTT ATTTTTTGTA TAGATGGGGT 004560 004561 CTTGTTGTGT TGGCCAGGCT GGCCACAAAT TCCTGGTCTC AAGTGATCCT CCCACCTCAG CCTCTGAAAG TGCTGGGATT 004640 004641 ACAGATGTGA GCCACCACAT CTGGCCAGTT CATTTCCTAT TACTGGTTCA TTGTGAAGGA TACATCTCAG AAACAGTCAA 004720 004721 TGAAAGAGAC GTGCATGCTG GATGCAGTGG CTCATGCCTG TAATCTCAGC ACTTTGGGAG GCCAAGGTGG GAGGATCGCT 004800 004801 TAAACTCAGG AGTTTGAGAC CAGCCTGGGC AACATGGTGA AAACCTGTCT CTATAAAAAA

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Predicted Small Protein

Name	`ENST00000484859.1_smProtein_2729:3001`
Length	`91`
Molecular weight	`9749.2983`
Aromaticity	`0.0222222222222`
Instability index	`56.2188888889`
Isoelectric point	`9.92413330078`
Runs	`13`
Runs residual	`0.00458553791887`
Runs probability	`0.0341200929436`
Amino acid sequence	`MAHCSLKLLGSSDQSSHLILPSSRDHRCVPPRSCYVVQAGLELLASSNPLTLAPHSARIT GMSHHAWPLPCLLRTKGRIQILLSSTRAIS`
Secondary structure	`LLLLEEELLLLLLLLLLEEELLLLLLLLLLLLLLEEHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLLLLHHHLLLLLEEEHHHLLLLLL`
PRMN	`-`
PiMo	`-`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>GCCATTTCTTTTTTTTCTTTTTTTTTTTAAGATAAGAGTCTTTCTCTTGTCACCCAGGCTGGAGTGCAATGGTGCGATTTTGGCTCACTGCAACCTTCACCTTCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCCGCCACCATACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTCCTCTGGAGCTCCTGACCTCAGGCAATCTGCCTGCCTCAGCCTCCCAAAATTCAAGGAGTACAGATGTGAACAACCACGCCCGGCCTCCATTTCTTTTTTGTAGTCTTTAATAAACAGCTGCTATCATTGCAGACTTGCTGTTTAGGCACTTAGGAATTTTTCACTAGAAGGCATGTAAATAAAGACCATGGGCAATTGTAATGAATTTCGCCTTCATTCTTTGACTACATGACTGTCCCCAGAGCTGTAACTTTATTGAATTTTTTAGAAGCCATTTAGCTAGCAACTGAGCCTAACCAGCCACTCACTGTCATTATTCAGTGCTCTTTTATTATTGTCTATTTCTCCTCCAACTTGGCTACACTCACAAAGTGATAAAAACTTGCATTTGTTTTCTTTCCTTTTCAGAGACAGCGTCTTGCTCTGTTGCTTAGGCTACAGTACAGTGACATGATCATGGTTCACTGTAGCCTCAAACTCCTGGGCTCAAGTGGTTCTCTCACTTCAGTCTCCCAAGTAGCTGGGACTACAGACATGTGCCACCATGTCCAGCTAATTTTTTATCATAGAGACGGGATCTTGCCATGTTGCTCCGACTGGGCTCAAAACTCCTGACCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCAGGCATGACCACCTGTGCCCAGCCCCCTATTATTATTATTTTAAATAATAGCTTTATTAAAATATTCACATACCATTCACTTTATTTATTGAAATCTGCAATTCAGTAGGTTTTAGAATATTCACAGAGCTGTGCATCGATCACCACAGTCACTTTTAGAACCTTTCATTACCCTATAGAGAAATCCATACCCCTTAGCCACTACCTCCTACTCTCCCCACCTACCTTTGCCCCCAGCCTTAGGCAACCATTGATTAATTTTTTTGTCACTATAGATTTGCCTAATCTGGACAAATAGAATTGTACAATATGTGATCTTTTGTGGCTTTTTTTCCCTCTTAGCACAGTGTTTTCAAAGTTCCTTTATGTCATAGTGTGTATCAATATTTCATTCCTTCTATGGCAGTATTCCATGGTAGAGACACACTGCATTTTGTTTATCTGTTCATCAGTTGGTGGATATTTGGGTTGTTTCCATGTATTCCATGTATTGGTCATTATGAATAATGCTGCTATGAAGATTGTTGTACAAGTTTTTGTGTGGACATATATTTTTATTTTTCTGGGATATATGCCTAGGAGTGAAATTGTTGCATTATAGGATGACTGTACATTTAGCCTTTTGAGAAACTGCCAGAATGTTTTCTAACGTGGCTATACCAGTTGGGTGCAATGGCTCACACCTGTAATCCCAGCTACTCAGGAGGCTCAGCTAGGAGGATGGCTTGAGCCCGTGAATTCAAGACCAGCCTGGGCAAGATAGTGAAACCCCGTCTTGATTTTTTAAAAATCCAATTAAAATGACAAGAAAAGAAATACCCAAACAAAATGGTTACACAATTTTATGTTCCCACCAGTAATGTTTGTGGGTTCCAATTCCTCCACATCTTCACTGACATTTTTTTTTTCTAGATAGGGGCTTGCTCTGTCTCTCAGGCCGCAGTGCAATGATGCCATCACAGTTCACTGCAGCCGTGACCTCCCAGGCACAAGTGATTCTCTCATCTCAGCCTCCTGGGTAGCTGAAAATTACAGGTGTACGCCACCATGCCTGGCTAATTTTTAGATTTTTCTGTAGTGGTGGGATTTTACCATGTTGCCCAGGCTGGTCTCATACTCCTGGCCTCAAGTGATCTGCCCACCTCAGCCTCCCTAAGTTCTGGAATTACAGGCTGCCACCATGCCCGGCCTTCACCAACATTTGCCATTATCTGTTTTTTTTTTCTTCCTTTATACCTTAAAGCAGTATAAGAACAAGTGTCTTCAATTATAGGAAACAGTATAATCCCAGGGCTTTGGGAGGCTAAGACAGGAAGATGTCTTGATGCCAGGAGTTTTTTTTGTTGTTGTTGTTTTTGTTTTTGTTGTTGTTGTTGTTGTTGACAGTCTCGCTCTGTCACCCAGGGTGGAGTGCAGTGATGGGGTCCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGGTGAGACTACAGGCACACGCCACTACTGCCCAGCTGATTTTTGTATTTTTGATAGAGTCAGAGTTTCACCGTGTTGGCCAGGCTGGTCTCGAACTCCAGACTTCAGGTGATTTGCCTGCCTTAGCTTCCCAAAGTGCTGCGATTACAAGCATGAGCCACCATGCCCAGCCTGATGCCAGGAGTTTTAGACTAGCCTGGGCAACCTAGCAAGACCTTGTCTCTACAGAATATTTAAAAATTAGCCAAATGTGGTGGTGCCTGTGTATAGTCTCTCTCCCTCTCTCTTTTTTTTTTCTAACTTTTTGTGACATGGTCTGGCTCTGTCACCCAGGCTGAAGTGCAGTGGTGTGATCATGGCTCACTGCAGCCTGAAACTCCTGGGATCAAGTGATCAATCCTCCCACCTCATCCTACCAAGTAGTAGGGACCACAGGTGTGTGCCACCCAGGTCTTGCTATGTTGTCCAGGCTGGTCTTGAGCTCCTGGCCTCAAGCAATCCTCTCACCTTGGCCCCCCACAGTGCAAGGATTACAGGTATGAGCCACCATGCCTGGCCCCTACCCTGCCTACTGAGAACCAAAGGAAGGATCCAAATTCTCCTTAGCTCAACTCGAGCCATTTCCTGATTGCTTCATCAGCGAGGAGCTGGTTATTGGGCTGTCCAGGCCTCCCAAGCAGCACAGAAATGAGGTGAAGGAGTTTTCCTGTTGCTCCACTCTGTAAGGAGTTGGAGGGTGATGTTTACTCGTTTGCAGAGAGAGATGCCTTGTAGGCACCTCAGGATGGAGAGGGCCCTGATTCCAATGTCCTTTTTTTCTTCAGAAACAGGACCTTGCCCTGTCACTCAGGATGGAGTTCAGTGGTCCTATCATGGCTCATTATAGCCTCAAACTCCCAGGCTCAAGCAATCCTACCATGTCAGCCTTCCCAGTAGCTGGGACTACAGCTGGATCTACCATGAAAGACTTGTGAATCCAGGAAGAGAGACTGACTGGGCAACATGTTATTCAGGTACAAAAAGATTTGGACTGTAACTTAAAAATGATCAAATTATGTTTCCCATGCATCAGGTGCAATGGGAAGCTCTTCTGGAGAGTGAGAGAAGCTTCCAGTTAAGGTGACATTGAAGCCAAGTCCTGAAAGATGAGGAAGAGTTGTATGAGAGTGGGGAGGGAAGGGGGAGGTGGAGGGATGGGGAATGGGCCGGGATGGGATAGCGCAAACTGTCCGGGAAGGGAAACCAGCACTGTACAGACCTGAACAACGAAGATGGCATATTCTGTTCAGGGAATGGTGAATTAAGTGTGGCAGGAATGCTTTGTAGACACAGTAATTTGCTTGTATGGAATTTTGCCTGAGAGACCTCATTGCAGTTTCTGATTTTTTGATGTCTTCATCCATCACTGTCCTTGTCAAATAGTTTGGAACAGGTATAATGATCACAATAACCCCAAGCATAATATTTCGTTAATTCTCACAGAATCACATGTAGGTGCCACAGTTATCCCCATTTTATGAATGGAGTGATGAAAACCTTAGGAATAATGAATGATTTGCGCAGGCTCACCTGGATATTAAGACTGAGTCAAATGTTGGGTCTGGTCTGACTTTAATGTTTGCTTTGTTCATGAGCACCACATATTGCCTCTCCTATGCAGTTAAGCAGGTAGGTGACAGAAAAGCCCATGTTTGTCTCTACTCACACACTTCCGACTGAATGTACGTATGGAGTTTCTACACCAGATTCTTCAGTGCTCTGGATATTAACTGGGTATCCCATGACTTTATTCTGACACTACCTGGAGTTAGCACAGACCCCACAAGTTAGGGGCTCAGTCCCACGAGGCCATCCTCACTTCAGATGACAATGGCAAGTCCTAAGTTGTCACCATACTTTTGACCAACCTGTTACCAATCGGGGGTTCCCGTAACTGTCTTCTTGGGTTTAATAATTTGCTAGAACAGTTTACGGAACTCAGAAAAACAGTTTATTTTCTTTTTTTCTGAGAGAGAGGGTCTTATTTTGTTGCCCAGGCTGGTGTGCAATGGTGCAGTCATAGCTCATTGCAGCCTTGATTGTCTGGGTTCCAGTGGTTCTCCCACCTCAGCCTCCCTAGTAGCTGAGACTACATGCCTGCACCACCACATCTGGCTAGTTTCTTTTATTTTTTGTATAGATGGGGTCTTGTTGTGTTGGCCAGGCTGGCCACAAATTCCTGGTCTCAAGTGATCCTCCCACCTCAGCCTCTGAAAGTGCTGGGATTACAGATGTGAGCCACCACATCTGGCCAGTTCATTTCCTATTACTGGTTCATTGTGAAGGATACATCTCAGAAACAGTCAATGAAAGAGACGTGCATGCTGGATGCAGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGTGGGAGGATCGCTTAAACTCAGGAGTTTGAGACCAGCCTGGGCAACATGGTGAAAACCTGTCTCTATAAAAAA</dnaseq>|
 }}
-[[Category:Intergenic]][[Category:lnc-FAM138A-3]][[Category:NONHSAG000012]][[Category:ENSG00000241860.2]][[Category:ENSG00000241860.2]][[Category:Transcripts]]
+[[Category:Intergenic]][[Category:lnc-FAM138A-3]][[Category:NONHSAG000012]][[Category:ENSG00000241860.2]][[Category:ENSG00000241860.2]][[Category:Transcripts]][[Category:Transcripts]]