Difference between revisions of "ENST00000500197.2"

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sequence = <dnaseq>GCACACACCACTTCACTCTCCACTCCGAGGCTCAGGGAGCAAGTGCCTGGCATGGGGGACGCCGAAAGAAGCCTGTTTGTGTGCTGCGGCCGTGCTGTGACTTTGGATCTTGTCTTTCAGCCGGCGCCTCGGTTCCTGCCCAGCTGGATTTGGGGGGCAGCATTGCCTGGCGCAGGGAGATCAAATGAGACTGCAAAGAAGCATAAAATGAATAGACAATCCAACCAACCAAAGACCGGGGGCAGCAGCAGGCCAGCAAGACGGCATCTTCTCCTTCCCAGCCTAGAAGCCCTGTGAAATCGAGGATCTTCCCCCTAAAACACATACACACAAGATATGTGCAATCAAGCTGCCACCGCTTGGTAAAAAGCCATGGTGCCTAACCAAAAAGGATCAGGAACAGATCCTTGAATCAGCTGTCACTTCTATAGAATGGGATTTTTTTTTCCTTCCTCCTTAACCTGCGCTGGAAATTGCCGTTGGCTTTATACATCTCTATAGAGAGAGGCTAAAGAGTCTTGCGTGAGAAAGAAGCAATTTACAATGCAAATAGAGGCCTGTGAAGGGACGGATGCTGCTGCTCACTCGTAACAGCTTGCTGCACCTTAATAGCTGGTTTTATTTTCTGATATTAATAGATGAATTGTTGGCTAACGCTGCCGGAGATTACTTGCTGAAAGGAAAAAGAAAAGTTCGGAATAAACTCTGAAGGCAACAGATCTCGTTTGGATGTTTTAGCCGCGCACACACACAAACAGAAACCAGGTCATATTTACATAAAAGGAGGAATCTTAAGCGCGGCAAGTATCCTGGACGACCACTCTTCGGTACTGCCAGAAAGGATCAGGACCTGGAGTCTGGCAAGAGGAAGACAGAGGCCTGTGTGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCGCCGGGGAGCGTGTGAGAATGAAAGACTACAGCCGAGAGACAGTAAAAACCAGAAAGGTCAGGAATACTTATTGAATCTAACTTTGTTTTTGTTTTGTTTTTTTCCTTATGATTAAAGGTGGGATGAGAGAAAATTAAATGACACACACATGCTAAAATATCAAGGTTCCAGATATGTCTTGAGAGGGGTTGTTGCAGCTGCAAAGGAGAAGTGTATAGTGATAATGAGTAAAGATGCATGTGCAGTTTGTTCTATTTTAAGGCAAAAGTTATATCAGGGATTTTTTTCTTAGAAAGGTGTTGCAGAGATGTCTGGTACCTAGTTTAAAAATGATTCCATAATATGTAGACTTGGGCAGTTCCTTTGGGAGGCACCTCCCTCTCAAAATTTGAAGATTGTGCTTGGAAATTACTTTACATGTATTTGGGCTGTATGTCAATTTGTACGAAATTAGACTTTCAGAAAAGTTTATACTGGAAGGTTAATAATTTGTATCTACTGAGGACTTAGAGCTAGCAGGCAAAATGAAAAAAAAAAAAAAAAAAGCAAGGGCTGATTTTTATTCTTCTATTCAAAATACAAGGACAGATGCTTCTCTGTTCCAAGAGGGTTTCCTTGAGGAAGCTACTGAAGCAGAAAGACATGATGGAGACGAGATCGCCTCCCCTCTTGTCAAAGTGTTAAAAAAATGTTCTGTCTTACTCTGCGCCTAGCATTGGAAATGAAAGTGACATTTACGCCACAACCCACGTGTGCGCCTCCTCTCTTTTTGTTTAAGGATGATCAGGTCTATCCAGGAAACAGCTCTGGCATCCCAAACTGAAATAATTAGGACGTATATAGACCTGACAAAAATGGAAAGGGGGTGGGGAATCTGAGGGTCTGTCTTGCCTAATTGATTCCGCTAAACGGAATGCAGGAGATGTGAACGGCAGGACGCTCCGATTCCCACGCTCGGGGGCAAGTGATAAAGCGGGGCCGGGCAGCCTATGACAGACAGCCCTGTTGGGGGGTGGGGGTATGAAAAAAACATCAAGTGCACACACCATACTCATCTCCATCGCTTAAGAAAGTAAAGGCATTTCCCACCCACAGCCATCTGCAGCTTCCCAAATGGCAGCACCAACTGGTCTGTAGCTGCTACATAGTCTGCTTCTGTTAATTTTTTAACCACTGTTTAATCTGGCCATAATTAAGTTTGGCTTTCTTCGTTGTTTGAGATTTTCAGAATTCAAGGCAAGCTAGTAGAAAGCAATTCCAAGAAAGTCCCATGACTGCCTGCCCCTAATGTCAAAATCTCAGTCCATGAGATTATGGCCTTGTGACCACATTTTTGCTTTTGTTTTGGGTGGGCAAATGTGTATAGAGATAAAATACATATCTCTATATAACAGTCGTTATTATAATTTCATGAGGCTTTTTACCTCTTAACATGATACATCTAGGAACTTGGTCTAATTGTGCTAGTAGATATACACTAGAAGTAAAACTATAAAGTCATTAGCCTGTAGAAAGTTGATTATGATAACAATATGATAAAAAGTTTGTTTTGGAATAGTCTCAGCTAGATGGGTCTAAATAGCCATTTTAATGTAATCTAAAAATAACACTATGCCTAGCAGAAACTTTGGCGCTTTGGAGGTCCCCATTGTCGCCTTTTCATAAAAGTCCTTAAGTTTTCCATATGTCACCAAGCAAACATTTGTATAGGCATTTACACAGAAATATAACCATTGCAATTAGAAAATATCCAAAATAGCCTGTTATCTTCCACGTGGCCTAGATTATTGACAATCCCAAATATACAATTTTTCTTTAAAAGTAGTACAATTTCCTTTGTAGCTTCAATTCCTTATATGACTTCAGACTGGAGAAGCCTGTTAAACCACTGTTAGTTTCAGTTAGAAAGTCTGAGAGACTTTATACATAAATTCTCAATTTGGCTGCTGTACACGTGCCAGAGTTTTACTACTGTAGTGACCGTTGAGAAGACCCTTGTTTATTTACATTTGAAGCACTGTTTGTGCAAACAACCTTTCATTGTTAAGTGCCTGTATTCCTTTCATTTACTTCATGTCCAGGGGTGCTATTTACCTAGAACCATTGTCTACTACAATTAACATTTACATTACAAAGTGTGTGGTTTTCTTTTTCAAGGAGGTTCAATTAAGGCAATAAGATGTTTGCTGGAGAAACCTATTGTTTACTGAAAGCACTCAATGAAGTCAAATTACTGAAGCTTTTGCCTACATCTTGGTCTTTTATGTAAATATGTTAAATATAACATCTAAGGAAAATAAACAATATTATAATTATGTGTTTGCCATTGTCATATCAAACTTGCTTTGTATCATACTAATGTTACATAACTTATCGATCAATAAAAATACATTTCAATGTTA</dnaseq>|
 
sequence = <dnaseq>GCACACACCACTTCACTCTCCACTCCGAGGCTCAGGGAGCAAGTGCCTGGCATGGGGGACGCCGAAAGAAGCCTGTTTGTGTGCTGCGGCCGTGCTGTGACTTTGGATCTTGTCTTTCAGCCGGCGCCTCGGTTCCTGCCCAGCTGGATTTGGGGGGCAGCATTGCCTGGCGCAGGGAGATCAAATGAGACTGCAAAGAAGCATAAAATGAATAGACAATCCAACCAACCAAAGACCGGGGGCAGCAGCAGGCCAGCAAGACGGCATCTTCTCCTTCCCAGCCTAGAAGCCCTGTGAAATCGAGGATCTTCCCCCTAAAACACATACACACAAGATATGTGCAATCAAGCTGCCACCGCTTGGTAAAAAGCCATGGTGCCTAACCAAAAAGGATCAGGAACAGATCCTTGAATCAGCTGTCACTTCTATAGAATGGGATTTTTTTTTCCTTCCTCCTTAACCTGCGCTGGAAATTGCCGTTGGCTTTATACATCTCTATAGAGAGAGGCTAAAGAGTCTTGCGTGAGAAAGAAGCAATTTACAATGCAAATAGAGGCCTGTGAAGGGACGGATGCTGCTGCTCACTCGTAACAGCTTGCTGCACCTTAATAGCTGGTTTTATTTTCTGATATTAATAGATGAATTGTTGGCTAACGCTGCCGGAGATTACTTGCTGAAAGGAAAAAGAAAAGTTCGGAATAAACTCTGAAGGCAACAGATCTCGTTTGGATGTTTTAGCCGCGCACACACACAAACAGAAACCAGGTCATATTTACATAAAAGGAGGAATCTTAAGCGCGGCAAGTATCCTGGACGACCACTCTTCGGTACTGCCAGAAAGGATCAGGACCTGGAGTCTGGCAAGAGGAAGACAGAGGCCTGTGTGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCGCCGGGGAGCGTGTGAGAATGAAAGACTACAGCCGAGAGACAGTAAAAACCAGAAAGGTCAGGAATACTTATTGAATCTAACTTTGTTTTTGTTTTGTTTTTTTCCTTATGATTAAAGGTGGGATGAGAGAAAATTAAATGACACACACATGCTAAAATATCAAGGTTCCAGATATGTCTTGAGAGGGGTTGTTGCAGCTGCAAAGGAGAAGTGTATAGTGATAATGAGTAAAGATGCATGTGCAGTTTGTTCTATTTTAAGGCAAAAGTTATATCAGGGATTTTTTTCTTAGAAAGGTGTTGCAGAGATGTCTGGTACCTAGTTTAAAAATGATTCCATAATATGTAGACTTGGGCAGTTCCTTTGGGAGGCACCTCCCTCTCAAAATTTGAAGATTGTGCTTGGAAATTACTTTACATGTATTTGGGCTGTATGTCAATTTGTACGAAATTAGACTTTCAGAAAAGTTTATACTGGAAGGTTAATAATTTGTATCTACTGAGGACTTAGAGCTAGCAGGCAAAATGAAAAAAAAAAAAAAAAAAGCAAGGGCTGATTTTTATTCTTCTATTCAAAATACAAGGACAGATGCTTCTCTGTTCCAAGAGGGTTTCCTTGAGGAAGCTACTGAAGCAGAAAGACATGATGGAGACGAGATCGCCTCCCCTCTTGTCAAAGTGTTAAAAAAATGTTCTGTCTTACTCTGCGCCTAGCATTGGAAATGAAAGTGACATTTACGCCACAACCCACGTGTGCGCCTCCTCTCTTTTTGTTTAAGGATGATCAGGTCTATCCAGGAAACAGCTCTGGCATCCCAAACTGAAATAATTAGGACGTATATAGACCTGACAAAAATGGAAAGGGGGTGGGGAATCTGAGGGTCTGTCTTGCCTAATTGATTCCGCTAAACGGAATGCAGGAGATGTGAACGGCAGGACGCTCCGATTCCCACGCTCGGGGGCAAGTGATAAAGCGGGGCCGGGCAGCCTATGACAGACAGCCCTGTTGGGGGGTGGGGGTATGAAAAAAACATCAAGTGCACACACCATACTCATCTCCATCGCTTAAGAAAGTAAAGGCATTTCCCACCCACAGCCATCTGCAGCTTCCCAAATGGCAGCACCAACTGGTCTGTAGCTGCTACATAGTCTGCTTCTGTTAATTTTTTAACCACTGTTTAATCTGGCCATAATTAAGTTTGGCTTTCTTCGTTGTTTGAGATTTTCAGAATTCAAGGCAAGCTAGTAGAAAGCAATTCCAAGAAAGTCCCATGACTGCCTGCCCCTAATGTCAAAATCTCAGTCCATGAGATTATGGCCTTGTGACCACATTTTTGCTTTTGTTTTGGGTGGGCAAATGTGTATAGAGATAAAATACATATCTCTATATAACAGTCGTTATTATAATTTCATGAGGCTTTTTACCTCTTAACATGATACATCTAGGAACTTGGTCTAATTGTGCTAGTAGATATACACTAGAAGTAAAACTATAAAGTCATTAGCCTGTAGAAAGTTGATTATGATAACAATATGATAAAAAGTTTGTTTTGGAATAGTCTCAGCTAGATGGGTCTAAATAGCCATTTTAATGTAATCTAAAAATAACACTATGCCTAGCAGAAACTTTGGCGCTTTGGAGGTCCCCATTGTCGCCTTTTCATAAAAGTCCTTAAGTTTTCCATATGTCACCAAGCAAACATTTGTATAGGCATTTACACAGAAATATAACCATTGCAATTAGAAAATATCCAAAATAGCCTGTTATCTTCCACGTGGCCTAGATTATTGACAATCCCAAATATACAATTTTTCTTTAAAAGTAGTACAATTTCCTTTGTAGCTTCAATTCCTTATATGACTTCAGACTGGAGAAGCCTGTTAAACCACTGTTAGTTTCAGTTAGAAAGTCTGAGAGACTTTATACATAAATTCTCAATTTGGCTGCTGTACACGTGCCAGAGTTTTACTACTGTAGTGACCGTTGAGAAGACCCTTGTTTATTTACATTTGAAGCACTGTTTGTGCAAACAACCTTTCATTGTTAAGTGCCTGTATTCCTTTCATTTACTTCATGTCCAGGGGTGCTATTTACCTAGAACCATTGTCTACTACAATTAACATTTACATTACAAAGTGTGTGGTTTTCTTTTTCAAGGAGGTTCAATTAAGGCAATAAGATGTTTGCTGGAGAAACCTATTGTTTACTGAAAGCACTCAATGAAGTCAAATTACTGAAGCTTTTGCCTACATCTTGGTCTTTTATGTAAATATGTTAAATATAACATCTAAGGAAAATAAACAATATTATAATTATGTGTTTGCCATTGTCATATCAAACTTGCTTTGTATCATACTAATGTTACATAACTTATCGATCAATAAAAATACATTTCAATGTTA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000245526.4]][[Category:lnc-MEF2C-2]]
+
[[Category:Intergenic]][[Category:ENSG00000245526.4]][[Category:lnc-MEF2C-2]][[Category:Transcripts]]

Latest revision as of 16:30, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000500197.2

Source

Gencode19

Same with

lnc-MEF2C-2:12

Classification

intergenic

Length

3381 nt

Genomic location

chr5-:87960263..87969157

Exon number

4

Exons

87960263..87963409,87966854..87966903,87968783..87968908,87969100..87969157

Genome context

Sequence
000001 GCACACACCA CTTCACTCTC CACTCCGAGG CTCAGGGAGC AAGTGCCTGG CATGGGGGAC GCCGAAAGAA GCCTGTTTGT 000080
000081 GTGCTGCGGC CGTGCTGTGA CTTTGGATCT TGTCTTTCAG CCGGCGCCTC GGTTCCTGCC CAGCTGGATT TGGGGGGCAG 000160
000161 CATTGCCTGG CGCAGGGAGA TCAAATGAGA CTGCAAAGAA GCATAAAATG AATAGACAAT CCAACCAACC AAAGACCGGG 000240
000241 GGCAGCAGCA GGCCAGCAAG ACGGCATCTT CTCCTTCCCA GCCTAGAAGC CCTGTGAAAT CGAGGATCTT CCCCCTAAAA 000320
000321 CACATACACA CAAGATATGT GCAATCAAGC TGCCACCGCT TGGTAAAAAG CCATGGTGCC TAACCAAAAA GGATCAGGAA 000400
000401 CAGATCCTTG AATCAGCTGT CACTTCTATA GAATGGGATT TTTTTTTCCT TCCTCCTTAA CCTGCGCTGG AAATTGCCGT 000480
000481 TGGCTTTATA CATCTCTATA GAGAGAGGCT AAAGAGTCTT GCGTGAGAAA GAAGCAATTT ACAATGCAAA TAGAGGCCTG 000560
000561 TGAAGGGACG GATGCTGCTG CTCACTCGTA ACAGCTTGCT GCACCTTAAT AGCTGGTTTT ATTTTCTGAT ATTAATAGAT 000640
000641 GAATTGTTGG CTAACGCTGC CGGAGATTAC TTGCTGAAAG GAAAAAGAAA AGTTCGGAAT AAACTCTGAA GGCAACAGAT 000720
000721 CTCGTTTGGA TGTTTTAGCC GCGCACACAC ACAAACAGAA ACCAGGTCAT ATTTACATAA AAGGAGGAAT CTTAAGCGCG 000800
000801 GCAAGTATCC TGGACGACCA CTCTTCGGTA CTGCCAGAAA GGATCAGGAC CTGGAGTCTG GCAAGAGGAA GACAGAGGCC 000880
000881 TGTGTGGGAA GCGAGTTGTT ATCTTTGGTT ATCTAGCTGT ATGAGTGTAT TGGTCTTCAT AAAGCTAGAT AACCGAAAGT 000960
000961 AAAAACTCCT TCAAGATCGC CGGGGAGCGT GTGAGAATGA AAGACTACAG CCGAGAGACA GTAAAAACCA GAAAGGTCAG 001040
001041 GAATACTTAT TGAATCTAAC TTTGTTTTTG TTTTGTTTTT TTCCTTATGA TTAAAGGTGG GATGAGAGAA AATTAAATGA 001120
001121 CACACACATG CTAAAATATC AAGGTTCCAG ATATGTCTTG AGAGGGGTTG TTGCAGCTGC AAAGGAGAAG TGTATAGTGA 001200
001201 TAATGAGTAA AGATGCATGT GCAGTTTGTT CTATTTTAAG GCAAAAGTTA TATCAGGGAT TTTTTTCTTA GAAAGGTGTT 001280
001281 GCAGAGATGT CTGGTACCTA GTTTAAAAAT GATTCCATAA TATGTAGACT TGGGCAGTTC CTTTGGGAGG CACCTCCCTC 001360
001361 TCAAAATTTG AAGATTGTGC TTGGAAATTA CTTTACATGT ATTTGGGCTG TATGTCAATT TGTACGAAAT TAGACTTTCA 001440
001441 GAAAAGTTTA TACTGGAAGG TTAATAATTT GTATCTACTG AGGACTTAGA GCTAGCAGGC AAAATGAAAA AAAAAAAAAA 001520
001521 AAAAGCAAGG GCTGATTTTT ATTCTTCTAT TCAAAATACA AGGACAGATG CTTCTCTGTT CCAAGAGGGT TTCCTTGAGG 001600
001601 AAGCTACTGA AGCAGAAAGA CATGATGGAG ACGAGATCGC CTCCCCTCTT GTCAAAGTGT TAAAAAAATG TTCTGTCTTA 001680
001681 CTCTGCGCCT AGCATTGGAA ATGAAAGTGA CATTTACGCC ACAACCCACG TGTGCGCCTC CTCTCTTTTT GTTTAAGGAT 001760
001761 GATCAGGTCT ATCCAGGAAA CAGCTCTGGC ATCCCAAACT GAAATAATTA GGACGTATAT AGACCTGACA AAAATGGAAA 001840
001841 GGGGGTGGGG AATCTGAGGG TCTGTCTTGC CTAATTGATT CCGCTAAACG GAATGCAGGA GATGTGAACG GCAGGACGCT 001920
001921 CCGATTCC