Difference between revisions of "ENST00000503577.1"
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sequence = <dnaseq>TTATTGAGATATGTATTTCTGCAGGTTAGGCTGAAGCCTCTGCATGTCCCGATGCCTGATGGAGATGGAGGAATCCTTTCTACCCAGACAGAAGTCACACTATGTAGCCTGTCCTCTTTAGAACTGAATCCGATTGGGATTTCTTCATGGTCTCCACCCTGGAAAACCAGCTTGAATTCTTGTATGCGGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGGCAGCTGAAGAGGATGTCCCCTGTGGAATATATGGAGGAAAGGCTGGCCAAAGCAATGTTCACATTCATGCAATTATCCAGTTAATTGCACAAGTCAAACCAAGACTTGTTCTAAAGCCACAATAACAACGAAATTGATGCTTTCATCTCCCAGAAATATGGCTGTGCTGTGATCCATGAATTTTAAATTAGAAGTAAATCTAGGACTGAACTACTAATTTTCCCCATCAGCTGAAGAGTTTTGGCAATGAACAGCTTGCAGCTGAATCCCCTTCTGGAAAT</dnaseq>| | sequence = <dnaseq>TTATTGAGATATGTATTTCTGCAGGTTAGGCTGAAGCCTCTGCATGTCCCGATGCCTGATGGAGATGGAGGAATCCTTTCTACCCAGACAGAAGTCACACTATGTAGCCTGTCCTCTTTAGAACTGAATCCGATTGGGATTTCTTCATGGTCTCCACCCTGGAAAACCAGCTTGAATTCTTGTATGCGGGCCAGATTCCAAGAGACATCATAATTAGATCCCAGAAGACTACATGGCAGCTGAAGAGGATGTCCCCTGTGGAATATATGGAGGAAAGGCTGGCCAAAGCAATGTTCACATTCATGCAATTATCCAGTTAATTGCACAAGTCAAACCAAGACTTGTTCTAAAGCCACAATAACAACGAAATTGATGCTTTCATCTCCCAGAAATATGGCTGTGCTGTGATCCATGAATTTTAAATTAGAAGTAAATCTAGGACTGAACTACTAATTTTCCCCATCAGCTGAAGAGTTTTGGCAATGAACAGCTTGCAGCTGAATCCCCTTCTGGAAAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-TARS-1]][[Category:NONHSAG040149]] | + | [[Category:Intergenic]][[Category:lnc-TARS-1]][[Category:NONHSAG040149]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:34, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000503577.1 |
Source |
Gencode19 |
Same with |
lnc-TARS-1:1,NONHSAT100947 |
Classification |
intergenic |
Length |
517 nt |
Genomic location |
chr5+:33229841..33255659 |
Exon number |
4 |
Exons |
33229841..33229964,33244958..33245162,33248648..33248757,33255582..33255659 |
Genome context |
|
Sequence |
000001 TTATTGAGAT ATGTATTTCT GCAGGTTAGG CTGAAGCCTC TGCATGTCCC GATGCCTGAT GGAGATGGAG GAATCCTTTC 000080
000081 TACCCAGACA GAAGTCACAC TATGTAGCCT GTCCTCTTTA GAACTGAATC CGATTGGGAT TTCTTCATGG TCTCCACCCT 000160 000161 GGAAAACCAG CTTGAATTCT TGTATGCGGG CCAGATTCCA AGAGACATCA TAATTAGATC CCAGAAGACT ACATGGCAGC 000240 000241 TGAAGAGGAT GTCCCCTGTG GAATATATGG AGGAAAGGCT GGCCAAAGCA ATGTTCACAT TCATGCAATT ATCCAGTTAA 000320 000321 TTGCACAAGT CAAACCAAGA CTTGTTCTAA AGCCACAATA ACAACGAAAT TGATGCTTTC ATCTCCCAGA AATATGGCTG 000400 000401 TGCTGTGATC CATGAATTTT AAATTAGAAG TAAATCTAGG ACTGAACTAC TAATTTTCCC CATCAGCTGA AGAGTTTTGG 000480 000481 CAATGAACAG CTTGCAGCTG AATCCCCTTC TGGAAAT |
Predicted Small Protein
Name | ENST00000503577.1_smProtein_146:319 |
Length | 58 |
Molecular weight | 6786.8942 |
Aromaticity | 0.105263157895 |
Instability index | 59.9543859649 |
Isoelectric point | 8.14019775391 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0304814618541 |
Amino acid sequence | MVSTLENQLEFLYAGQIPRDIIIRSQKTTWQLKRMSPVEYMEERLAKAMFTFMQLSS |
Secondary structure | LLLHHHHHHHHHHHLLLLHHHEEHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |