Difference between revisions of "ENST00000504719.2"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (4 intermediate revisions by 3 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>CTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCAGACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGGGCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCA</dnaseq>| | sequence = <dnaseq>CTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCAGACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGGGCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-MYC-2]][[Category:NONHSAG051258]][[Category:ENSG00000249859.3]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:35, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000504719.2 |
| Source |
Gencode19 |
| Same with |
lnc-MYC-2:1,NONHSAT147662 |
| Classification |
intergenic |
| Length |
754 nt |
| Genomic location |
chr8+:128806779..128903221 |
| Exon number |
3 |
| Exons |
128806779..128806980,128867401..128867565,128902835..128903221 |
| Genome context |
|
| Sequence |
000001 CTCCGGGCAG AGCGCGTGTG GCGGCCGAGC ACATGGGCCC GCGGGCCGGG CGGGCTCGGG GCGGCCGGGA CGAGGAGGGG 000080
000081 CGACGACGAG CTGCGAGCAA AGATGTGCCC CGGGACCCCC GGCACCTTCC AGTGGATTTC CTTGCGGAAA GGATGTTGGC 000160 000161 GGTCCCTGTG ACCTGTGGAG ACACGGCCAG ATCTGCCCTC CAGACCATAG CTGTCTGCAG TGCAGGAAGC CAACTATTAA 000240 000241 GGGGAAACAA AAGTGTTCTT AGGAGTCCTG CTGTCACTGT GGATTGAGCC GGTGAAGCCC TGAGGGATTT CATCGCTGAG 000320 000321 GTGGATGGAG AAGCAGCTGG GGGCCTTGGC TGTAAGGACC CCTAAGGGCC TGATCTTTTG GCCAGAAGGA GATTAAAAAG 000400 000401 ATGCCCCTCA AGATGGCTGT GCCTGTCAGC TGCATGGAGC TTCGTTCAAG TATTTTCTGA GCCTGATGGA TTTACAGTGA 000480 000481 TCTTCAGTGG TCTGGGGAAT AACGCTGGTG GAACCATGCA CTGGAATGAC ACACGCCCGG CACATTTCAG GATACTAAAA 000560 000561 GTGGTTTTAA GGGAGGCTGT GGCTGAATGC CTCATGGATT CTTACAGCTT GGATGTCCAT GGGGGACGAA GGACTGCAGC 000640 000641 TGGCTGAGAG GGTTGAGATC TCTGTTTACT TAGATCTCTG CCAACTTCCT TTGGGTCTCC CTATGGAATG TAAGACCCCG 000720 000721 ACTCTTCCTG GTGAAGCATC TGATGCACGT TCCA |
Predicted Small Protein
| Name | ENST00000504719.2_smProtein_32:286 |
| Length | 85 |
| Molecular weight | 8952.139 |
| Aromaticity | 0.0119047619048 |
| Instability index | 60.1785714286 |
| Isoelectric point | 11.0068969727 |
| Runs | 14 |
| Runs residual | 0.0326812253564 |
| Runs probability | 0.0495243142302 |
| Amino acid sequence | MGPRAGRARGGRDEEGRRRAASKDVPRDPRHLPVDFLAERMLAVPVTCGDTARSALQTIA VCSAGSQLLRGNKSVLRSPAVTVD |
| Secondary structure | LLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLHHHHHHHHHLLLLLLLLHHHHHHHHHH EEELLLEEELLLLEEEELLLEEEL |
| PRMN | - |
| PiMo | - |
