Difference between revisions of "ENST00000506664.1"
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sequence = <dnaseq>CAGAGATAGAAGATAAGGCTCTGCCCACAGTCTCCAGGCTGCAGCATCTGGTGAGGAAGGGAAGGTGTATGGCTGCATTGTTTTTCTCTTGGTGTTCAACTGGAATAGAGCAGGAAATTGCTTTGGAGATGAGGAAACAAACTCTTATGGAGACCTAAGAGACTGAAGACATCTGGCGTGGACTACTCTGATGGTAAAATTGAAAGTACACCTAAATTTGCTTTGTTACAGGATTCTCTTCAGAGGACAAGAGAAGATGTTACATTCTCTGCATGAGGACAATTCTGCAGCATCAAAATCGAATAATATTTGTTTTCTGGCAGCAGAATTTTGTATCATATTTCTAAAGACAGTAAGCACTTGGGTGGACGTCAATGAATACTAAACACTAATTGATCTGATACAGCCGTATGCACATACACAGATATACATGGTGGCTTGTAATGGTTGAAAAATTACGGTTTGGTTTTATTAAAAGATCTGTCACTTTTAGGTCAGAGTGGGATTTTGGAGGGATAGTCTCCCACAATAGAAAACTACCCTGACAACAGTGGTGTTTTGAGGTTGTTTGTTGTTTGGCTTCTTGATGATGCTTAGCTAAGGAGACACTTCCTTTCAGATTCTGTCTTCCAAACCCCAGGGCTCTGTTCTGGGCAGTTCAGCCTAATGGAATTAAGCCTGACATGTTTCAACTCTATTTCTTGATAAAATAAACATAAAACAATGGTTTAGATTTCGAATAAAACTCTTGAAGCATGGGGT</dnaseq>| | sequence = <dnaseq>CAGAGATAGAAGATAAGGCTCTGCCCACAGTCTCCAGGCTGCAGCATCTGGTGAGGAAGGGAAGGTGTATGGCTGCATTGTTTTTCTCTTGGTGTTCAACTGGAATAGAGCAGGAAATTGCTTTGGAGATGAGGAAACAAACTCTTATGGAGACCTAAGAGACTGAAGACATCTGGCGTGGACTACTCTGATGGTAAAATTGAAAGTACACCTAAATTTGCTTTGTTACAGGATTCTCTTCAGAGGACAAGAGAAGATGTTACATTCTCTGCATGAGGACAATTCTGCAGCATCAAAATCGAATAATATTTGTTTTCTGGCAGCAGAATTTTGTATCATATTTCTAAAGACAGTAAGCACTTGGGTGGACGTCAATGAATACTAAACACTAATTGATCTGATACAGCCGTATGCACATACACAGATATACATGGTGGCTTGTAATGGTTGAAAAATTACGGTTTGGTTTTATTAAAAGATCTGTCACTTTTAGGTCAGAGTGGGATTTTGGAGGGATAGTCTCCCACAATAGAAAACTACCCTGACAACAGTGGTGTTTTGAGGTTGTTTGTTGTTTGGCTTCTTGATGATGCTTAGCTAAGGAGACACTTCCTTTCAGATTCTGTCTTCCAAACCCCAGGGCTCTGTTCTGGGCAGTTCAGCCTAATGGAATTAAGCCTGACATGTTTCAACTCTATTTCTTGATAAAATAAACATAAAACAATGGTTTAGATTTCGAATAAAACTCTTGAAGCATGGGGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-MEF2C-2]][[Category:NONHSAG040968]][[Category:ENSG00000245526.4]] | + | [[Category:Intergenic]][[Category:lnc-MEF2C-2]][[Category:NONHSAG040968]][[Category:ENSG00000245526.4]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:38, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000506664.1 |
| Source |
Gencode19 |
| Same with |
lnc-MEF2C-2:16,NONHSAT102659 |
| Classification |
intergenic |
| Length |
762 nt |
| Genomic location |
chr5-:87836329..87907594 |
| Exon number |
3 |
| Exons |
87836329..87836941,87837853..87837888,87907482..87907594 |
| Genome context |
|
| Sequence |
000001 CAGAGATAGA AGATAAGGCT CTGCCCACAG TCTCCAGGCT GCAGCATCTG GTGAGGAAGG GAAGGTGTAT GGCTGCATTG 000080
000081 TTTTTCTCTT GGTGTTCAAC TGGAATAGAG CAGGAAATTG CTTTGGAGAT GAGGAAACAA ACTCTTATGG AGACCTAAGA 000160 000161 GACTGAAGAC ATCTGGCGTG GACTACTCTG ATGGTAAAAT TGAAAGTACA CCTAAATTTG CTTTGTTACA GGATTCTCTT 000240 000241 CAGAGGACAA GAGAAGATGT TACATTCTCT GCATGAGGAC AATTCTGCAG CATCAAAATC GAATAATATT TGTTTTCTGG 000320 000321 CAGCAGAATT TTGTATCATA TTTCTAAAGA CAGTAAGCAC TTGGGTGGAC GTCAATGAAT ACTAAACACT AATTGATCTG 000400 000401 ATACAGCCGT ATGCACATAC ACAGATATAC ATGGTGGCTT GTAATGGTTG AAAAATTACG GTTTGGTTTT ATTAAAAGAT 000480 000481 CTGTCACTTT TAGGTCAGAG TGGGATTTTG GAGGGATAGT CTCCCACAAT AGAAAACTAC CCTGACAACA GTGGTGTTTT 000560 000561 GAGGTTGTTT GTTGTTTGGC TTCTTGATGA TGCTTAGCTA AGGAGACACT TCCTTTCAGA TTCTGTCTTC CAAACCCCAG 000640 000641 GGCTCTGTTC TGGGCAGTTC AGCCTAATGG AATTAAGCCT GACATGTTTC AACTCTATTT CTTGATAAAA TAAACATAAA 000720 000721 ACAATGGTTT AGATTTCGAA TAAAACTCTT GAAGCATGGG GT |
Predicted Small Protein
| Name | ENST00000506664.1_smProtein_410:544 |
| Length | 45 |
| Molecular weight | 5462.3651 |
| Aromaticity | 0.181818181818 |
| Instability index | 66.125 |
| Isoelectric point | 10.9467163086 |
| Runs | 8 |
| Runs residual | 0.0187165775401 |
| Runs probability | 0.0400878819997 |
| Amino acid sequence | MHIHRYTWWLVMVEKLRFGFIKRSVTFRSEWDFGGIVSHNRKLP |
| Secondary structure | LLEEEEEEEEHHHHHLLLLEEEEEEEEEEEELLLLEEELLLLLL |
| PRMN | - |
| PiMo | - |
