Difference between revisions of "ENST00000512099.1"

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sequence = <dnaseq>CTCCTCCTCACTGCTTGAGCTCCAGGGCCCAGACGTGCTGCGGCCAGCCCGTCCGGCCTTTGGTTTTCTTGTCGTTGCTGCTCACTGTGCTTTTCAAGATTTCGTTCTGGACAGAGGAAAGGCGAGGGCGAGAAAAGTGGAAAGAGAAATTCAGAGAGGATACCTGGTTCCACACCAACCCGGAGCTTCCTGCGCCGGAGGAGACAGTGAACCAGAGAGGAAAGGATACGATGGGGGAGTCCCAGCCCCTGCAGAGAAGCTACCAAGGTTAGCGCTACCCTAGCCGGCGGGGAGGCCTCGGCGCTGCAGCGCTCAACAACCGGATCCACAAGTTTATAAACAACCGCCCGTTTTCGAGTCGTTTATGGAGGAGCGGGGGGCCTTTTCTCTTACTCCAGATGTAGGGGCGGGAGCTGGAGTCGGCGCTAAGTCTGGTTTCTCTGTTTTCATTAGCAATCCTAGATCCACATCTAGGAAAAATAGGGCGAAGGAGCCTCTGTTTCGGCCTGGGCCTCTCGGCCAGAGGCTCTCGGCCTCCAGCTCAGCAGTGCCTCTCCTCCAAGGCTTCTGAAATCTCTGGTTATTCGGGAGGTCACTCGATTATGCAGCCACCAAAGGGCTGCAGGGGCCAAAGAAGAAAAATTCGACAAATGCAATTATTTTCCGGGCCCTTCGTGGACATAGCTCTATCCTGCACCACTGCCCTGTGGGCACTTGGTAGGAATCTGAGAAAATTTTAAGCGGCTCAATTTACTTTCGTGTTATTTTTAATAACAATGACCATAGTAATGCCTTTTCCCCCTTAAAATGTACAGGCTTATTCAAATAAAATTAGAAATGCCAATGGAATATACTCATCTGGGAAATTACATTTTAACGTCATAGCCAAGGAAAAATTGGAGCTGTATTTTGAAGTCAAAAGTACTTATTTTATGTTTACCATTACGTTTTCCGGGCATAGTATGAGAACAACCACAAAACTCAGGGCTCAGTCTCTGGCAGCCTCCTTCTGGGAGTGGGGTAGGGGGTGCGATCAATAGTGAAATAATTGGAATCAAGGGCTTCTTCGAGACTTATTCTGGAAACATCTGAAAGCAAGATTGGATTGGAGGCCAAAAGAAGGGTCTAACAGAGACGGGGTGAGGCATCCAGACCAGTGCGATCGCGATCGATCGCGACCCAGAGTTTTCAAGGTCCGTCCTAAGTACTAGGGGAGCAGCGATAACCCGGAGGGACACCAGTCCCTACGAAGACCTTGGGCGATTTTGAAGTGCGGGCACCTCGATTCCCCGAATCTGTAGTGTGGCTGGTATCGGTGTTCCCCTGGTTTAACTAGCCTGTTTGAAGGCACAGATCATTCATGGGGATGTATAACCGAAACCAGTCCTCTCCACCGCCTGGGGATCTTCACTTTCGCAGTCTACGACTGCCTGTGACTCCAGAAAGACAAACTGCAGATTGGCCAAGATGGGGAAATTGAGGCAGAGAAGCCAAGACATGTGCTAAAGGTCATGCAGGCTATGAATGGAGCTGGAATGTGAACGCAGGCCATATGACCCCAGAGCCCATGTTCTTGAACCCTTAGAAAGACAGCAGCAACACACCTGGTGCAGCAGCTGCTTAGTTGGAGTGGCTGACAAGGTTGGCAGAGGATCCCGTTCCTCCCGTGGAGTGGCTGCCATGATACTGCCTGCACTGAAGCTGCTCCTATTTCTGAAATATGTATTGTTATTTTTTTCCCTGCATGTTGAACATTATACTCTTCTGTTCTTTCGCATTCTCTTCTTCCCTTCCGGATGACTTCTAGGGTTTTTGTGATTCTGTAATTCTAAAGGAGAAAGGATAATAAGAATTGTGAGGCCGGGCGCGGTGGCTCATGCCTGTAATCACAGCACTTTGGGAGGCCAAGGTGGGCGGATCACTAGGTGAGGAGATGGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCGGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCAACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGAAGAGGGAGACTCCATCTT</dnaseq>|
 
sequence = <dnaseq>CTCCTCCTCACTGCTTGAGCTCCAGGGCCCAGACGTGCTGCGGCCAGCCCGTCCGGCCTTTGGTTTTCTTGTCGTTGCTGCTCACTGTGCTTTTCAAGATTTCGTTCTGGACAGAGGAAAGGCGAGGGCGAGAAAAGTGGAAAGAGAAATTCAGAGAGGATACCTGGTTCCACACCAACCCGGAGCTTCCTGCGCCGGAGGAGACAGTGAACCAGAGAGGAAAGGATACGATGGGGGAGTCCCAGCCCCTGCAGAGAAGCTACCAAGGTTAGCGCTACCCTAGCCGGCGGGGAGGCCTCGGCGCTGCAGCGCTCAACAACCGGATCCACAAGTTTATAAACAACCGCCCGTTTTCGAGTCGTTTATGGAGGAGCGGGGGGCCTTTTCTCTTACTCCAGATGTAGGGGCGGGAGCTGGAGTCGGCGCTAAGTCTGGTTTCTCTGTTTTCATTAGCAATCCTAGATCCACATCTAGGAAAAATAGGGCGAAGGAGCCTCTGTTTCGGCCTGGGCCTCTCGGCCAGAGGCTCTCGGCCTCCAGCTCAGCAGTGCCTCTCCTCCAAGGCTTCTGAAATCTCTGGTTATTCGGGAGGTCACTCGATTATGCAGCCACCAAAGGGCTGCAGGGGCCAAAGAAGAAAAATTCGACAAATGCAATTATTTTCCGGGCCCTTCGTGGACATAGCTCTATCCTGCACCACTGCCCTGTGGGCACTTGGTAGGAATCTGAGAAAATTTTAAGCGGCTCAATTTACTTTCGTGTTATTTTTAATAACAATGACCATAGTAATGCCTTTTCCCCCTTAAAATGTACAGGCTTATTCAAATAAAATTAGAAATGCCAATGGAATATACTCATCTGGGAAATTACATTTTAACGTCATAGCCAAGGAAAAATTGGAGCTGTATTTTGAAGTCAAAAGTACTTATTTTATGTTTACCATTACGTTTTCCGGGCATAGTATGAGAACAACCACAAAACTCAGGGCTCAGTCTCTGGCAGCCTCCTTCTGGGAGTGGGGTAGGGGGTGCGATCAATAGTGAAATAATTGGAATCAAGGGCTTCTTCGAGACTTATTCTGGAAACATCTGAAAGCAAGATTGGATTGGAGGCCAAAAGAAGGGTCTAACAGAGACGGGGTGAGGCATCCAGACCAGTGCGATCGCGATCGATCGCGACCCAGAGTTTTCAAGGTCCGTCCTAAGTACTAGGGGAGCAGCGATAACCCGGAGGGACACCAGTCCCTACGAAGACCTTGGGCGATTTTGAAGTGCGGGCACCTCGATTCCCCGAATCTGTAGTGTGGCTGGTATCGGTGTTCCCCTGGTTTAACTAGCCTGTTTGAAGGCACAGATCATTCATGGGGATGTATAACCGAAACCAGTCCTCTCCACCGCCTGGGGATCTTCACTTTCGCAGTCTACGACTGCCTGTGACTCCAGAAAGACAAACTGCAGATTGGCCAAGATGGGGAAATTGAGGCAGAGAAGCCAAGACATGTGCTAAAGGTCATGCAGGCTATGAATGGAGCTGGAATGTGAACGCAGGCCATATGACCCCAGAGCCCATGTTCTTGAACCCTTAGAAAGACAGCAGCAACACACCTGGTGCAGCAGCTGCTTAGTTGGAGTGGCTGACAAGGTTGGCAGAGGATCCCGTTCCTCCCGTGGAGTGGCTGCCATGATACTGCCTGCACTGAAGCTGCTCCTATTTCTGAAATATGTATTGTTATTTTTTTCCCTGCATGTTGAACATTATACTCTTCTGTTCTTTCGCATTCTCTTCTTCCCTTCCGGATGACTTCTAGGGTTTTTGTGATTCTGTAATTCTAAAGGAGAAAGGATAATAAGAATTGTGAGGCCGGGCGCGGTGGCTCATGCCTGTAATCACAGCACTTTGGGAGGCCAAGGTGGGCGGATCACTAGGTGAGGAGATGGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCGGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCAACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGAAGAGGGAGACTCCATCTT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-SAP30-5]][[Category:NONHSAG039361]][[Category:ENSG00000237125.4]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:lnc-SAP30-5]][[Category:NONHSAG039361]][[Category:ENSG00000237125.4]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 16:46, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000512099.1

Source

Gencode19

Same with

lnc-SAP30-5:1,NONHSAT099258

Classification

intergenic

Length

2138 nt

Genomic location

chr4+:174448421..174504526

Exon number

4

Exons

174448421..174449652,174452118..174452229,174457999..174458121,174503856..174504526

Genome context

Sequence
000001 CTCCTCCTCA CTGCTTGAGC TCCAGGGCCC AGACGTGCTG CGGCCAGCCC GTCCGGCCTT TGGTTTTCTT GTCGTTGCTG 000080
000081 CTCACTGTGC TTTTCAAGAT TTCGTTCTGG ACAGAGGAAA GGCGAGGGCG AGAAAAGTGG AAAGAGAAAT TCAGAGAGGA 000160
000161 TACCTGGTTC CACACCAACC CGGAGCTTCC TGCGCCGGAG GAGACAGTGA ACCAGAGAGG AAAGGATACG ATGGGGGAGT 000240
000241 CCCAGCCCCT GCAGAGAAGC TACCAAGGTT AGCGCTACCC TAGCCGGCGG GGAGGCCTCG GCGCTGCAGC GCTCAACAAC 000320
000321 CGGATCCACA AGTTTATAAA CAACCGCCCG TTTTCGAGTC GTTTATGGAG GAGCGGGGGG CCTTTTCTCT TACTCCAGAT 000400
000401 GTAGGGGCGG GAGCTGGAGT CGGCGCTAAG TCTGGTTTCT CTGTTTTCAT TAGCAATCCT AGATCCACAT CTAGGAAAAA 000480
000481 TAGGGCGAAG GAGCCTCTGT TTCGGCCTGG GCCTCTCGGC CAGAGGCTCT CGGCCTCCAG CTCAGCAGTG CCTCTCCTCC 000560
000561 AAGGCTTCTG AAATCTCTGG TTATTCGGGA GGTCACTCGA TTATGCAGCC ACCAAAGGGC TGCAGGGGCC AAAGAAGAAA 000640
000641 AATTCGACAA ATGCAATTAT TTTCCGGGCC CTTCGTGGAC ATAGCTCTAT CCTGCACCAC TGCCCTGTGG GCACTTGGTA 000720
000721 GGAATCTGAG AAAATTTTAA GCGGCTCAAT TTACTTTCGT GTTATTTTTA ATAACAATGA CCATAGTAAT GCCTTTTCCC 000800
000801 CCTTAAAATG TACAGGCTTA TTCAAATAAA ATTAGAAATG CCAATGGAAT ATACTCATCT GGGAAATTAC ATTTTAACGT 000880
000881 CATAGCCAAG GAAAAATTGG AGCTGTATTT TGAAGTCAAA AGTACTTATT TTATGTTTAC CATTACGTTT TCCGGGCATA 000960
000961 GTATGAGAAC AACCACAAAA CTCAGGGCTC AGTCTCTGGC AGCCTCCTTC TGGGAGTGGG GTAGGGGGTG CGATCAATAG 001040
001041 TGAAATAATT GGAATCAAGG GCTTCTTCGA GACTTATTCT GGAAACATCT GAAAGCAAGA TTGGATTGGA GGCCAAAAGA 001120
001121 AGGGTCTAAC AGAGACGGGG TGAGGCATCC AGACCAGTGC GATCGCGATC GATCGCGACC CAGAGTTTTC AAGGTCCGTC 001200
001201 CTAAGTACTA GGGGAGCAGC GATAACCCGG AGGGACACCA GTCCCTACGA AGACCTTGGG CGATTTTGAA GTGCGGGCAC 001280
001281 CTCGATTCCC CGAATCTGTA GTGTGGCTGG TATCGGTGTT CCCCTGGTTT AACTAGCCTG TTTGAAGGCA CAGATCATTC 001360
001361 ATGGGGATGT ATAACCGAAA CCAGTCCTCT CCACCGCCTG GGGATCTTCA CTTTCGCAGT CTACGACTGC CTGTGACTCC 001440
001441 AGAAAGACAA ACTGCAGATT GGCCAAGATG GGGAAATTGA GGCAGAGAAG CCAAGACATG TGCTAAAGGT CATGCAGGCT 001520
001521 ATGAATGGAG CTGGAATGTG AACGCAGGCC ATATGACCCC AGAGCCCATG TTCTTGAACC CTTAGAAAGA CAGCAGCAAC 001600
001601 ACACCTGGTG CAGCAGCTGC TTAGTTGGAG TGGCTGACAA GGTTGGCAGA GGATCCCGTT CCTCCCGTGG AGTGGCTGCC 001680
001681 ATGATACTGC CTGCACTGAA GCTGCTCCTA TTTCTGAAAT ATGTATTGTT ATTTTTTTCC CTGCATGTTG AACATTATAC 001760
001761 TCTTCTGTTC TTTCGCATTC TCTTCTTCCC TTCCGGATGA CTTCTAGGGT TTTTGTGATT CTGTAATTCT AAAGGAGAAA 001840
001841 GGATAATAAG AATTGTGAGG CCGGGCGCGG TGGCTCATGC CTGTAATCAC AGCACTTTGG GAGGCCAAGG TGGGCGGATC 001920
001921 ACTAGGTGAG GAGATGGAGA CCATCCTGGC TAACACGGTG AAACCCCGTC TCTACTAAAA ATACAAAAAA TTAGCGGGGT 002000
002001 GTGGTGGCGG GCGCCTGTAG TCCCAGCAAC TCGGGAGGCT GAGGCAGGAG AATGGCGTGA ACCCGGGAAG CGGAGCTTGC 002080
002081 AGTGAGCCGA GATTGCGCCA CTGCACTCCA GCCTGGGCGA AGAGGGAGAC TCCATCTT
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