Difference between revisions of "ENST00000512246.1"
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sequence = <dnaseq>GGATAATGCAAGTGTTTAACAGATGCTTCACTATTAAAATATTTTCCCCCCAAGTCTCAAATATTGAAGAATCTCTAACCAGGGACACCAGTCCCTACGAAGACCTTGGGCGATTTTGAAGTGCGGGCACCTCGATTCCCCGAATCTGTAGTGTGGCTGGTATCGGTGTTCCCCTGGTTTAACTAGCCTGTTTGTGGAAGTGACTCTGACCGTTCCCTTAAGAATCTTTAATGCTCTTACATGAGATGAGCCTCAGAACAAGCTAAGAACCATCGAAAGAACATCAAGCCTGGAAGGTGACAGAAGGAGCAATGTGTTCTTGAAGATGTCACCTCAGCCCACCTGCTCCAAGGACAGTGCTTCTTGCGACACTCTGATAGCTCTGCATTCTTTTCTGTACCAGGAAGGCACAGATCATTCATGGGGATGTATAACCGAAACCAGTCCTCTCCACCGCCTGGGGATCTTCACTTTCGCAGTCTACGACTGCCTGTGACTCCAGAAAGACAAACTGCAGATTGGCCAAGTGCCTTTCAAACTGTTTTTTACTGGATGAAGAAACTCAACCAAGAAAATATATGTCGATTCTTGTATATGGGACAATATTAGCTGCTGTGATTTTTAATACTAGCATAAAATATAAGAATCTTTTTATTACTGTGATATTGTTTTTTCCTAAATGAATGCATAGTGTAACAATTGGTGTCAAAAAGCATTGAATTTTTTTCAGATGGATTAAGCTGGAATAATAAAGTATATCTATGAGATGATTTCTGTAAACTCTGACTTGCTGAGAAAAAAGTGAAAAAGCTTTTTCTGGAAGAAACATGGCAACTTAACCGTTATTAATCTGGACTAAATAAAACAGGAAACTGCTTCTTTA</dnaseq>| | sequence = <dnaseq>GGATAATGCAAGTGTTTAACAGATGCTTCACTATTAAAATATTTTCCCCCCAAGTCTCAAATATTGAAGAATCTCTAACCAGGGACACCAGTCCCTACGAAGACCTTGGGCGATTTTGAAGTGCGGGCACCTCGATTCCCCGAATCTGTAGTGTGGCTGGTATCGGTGTTCCCCTGGTTTAACTAGCCTGTTTGTGGAAGTGACTCTGACCGTTCCCTTAAGAATCTTTAATGCTCTTACATGAGATGAGCCTCAGAACAAGCTAAGAACCATCGAAAGAACATCAAGCCTGGAAGGTGACAGAAGGAGCAATGTGTTCTTGAAGATGTCACCTCAGCCCACCTGCTCCAAGGACAGTGCTTCTTGCGACACTCTGATAGCTCTGCATTCTTTTCTGTACCAGGAAGGCACAGATCATTCATGGGGATGTATAACCGAAACCAGTCCTCTCCACCGCCTGGGGATCTTCACTTTCGCAGTCTACGACTGCCTGTGACTCCAGAAAGACAAACTGCAGATTGGCCAAGTGCCTTTCAAACTGTTTTTTACTGGATGAAGAAACTCAACCAAGAAAATATATGTCGATTCTTGTATATGGGACAATATTAGCTGCTGTGATTTTTAATACTAGCATAAAATATAAGAATCTTTTTATTACTGTGATATTGTTTTTTCCTAAATGAATGCATAGTGTAACAATTGGTGTCAAAAAGCATTGAATTTTTTTCAGATGGATTAAGCTGGAATAATAAAGTATATCTATGAGATGATTTCTGTAAACTCTGACTTGCTGAGAAAAAAGTGAAAAAGCTTTTTCTGGAAGAAACATGGCAACTTAACCGTTATTAATCTGGACTAAATAAAACAGGAAACTGCTTCTTTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-SAP30-5]] | + | [[Category:Intergenic]][[Category:lnc-SAP30-5]][[Category:NONHSAG039361]][[Category:ENSG00000237125.4]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:47, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000512246.1 |
| Source |
Gencode19 |
| Same with |
lnc-SAP30-5:15,NONHSAT099275 |
| Classification |
intergenic |
| Length |
883 nt |
| Genomic location |
chr4+:174451609..174462981 |
| Exon number |
5 |
| Exons |
174451609..174451690,174452118..174452229,174455064..174455273,174457999..174458121,174462626..174462981 |
| Genome context |
|
| Sequence |
000001 GGATAATGCA AGTGTTTAAC AGATGCTTCA CTATTAAAAT ATTTTCCCCC CAAGTCTCAA ATATTGAAGA ATCTCTAACC 000080
000081 AGGGACACCA GTCCCTACGA AGACCTTGGG CGATTTTGAA GTGCGGGCAC CTCGATTCCC CGAATCTGTA GTGTGGCTGG 000160 000161 TATCGGTGTT CCCCTGGTTT AACTAGCCTG TTTGTGGAAG TGACTCTGAC CGTTCCCTTA AGAATCTTTA ATGCTCTTAC 000240 000241 ATGAGATGAG CCTCAGAACA AGCTAAGAAC CATCGAAAGA ACATCAAGCC TGGAAGGTGA CAGAAGGAGC AATGTGTTCT 000320 000321 TGAAGATGTC ACCTCAGCCC ACCTGCTCCA AGGACAGTGC TTCTTGCGAC ACTCTGATAG CTCTGCATTC TTTTCTGTAC 000400 000401 CAGGAAGGCA CAGATCATTC ATGGGGATGT ATAACCGAAA CCAGTCCTCT CCACCGCCTG GGGATCTTCA CTTTCGCAGT 000480 000481 CTACGACTGC CTGTGACTCC AGAAAGACAA ACTGCAGATT GGCCAAGTGC CTTTCAAACT GTTTTTTACT GGATGAAGAA 000560 000561 ACTCAACCAA GAAAATATAT GTCGATTCTT GTATATGGGA CAATATTAGC TGCTGTGATT TTTAATACTA GCATAAAATA 000640 000641 TAAGAATCTT TTTATTACTG TGATATTGTT TTTTCCTAAA TGAATGCATA GTGTAACAAT TGGTGTCAAA AAGCATTGAA 000720 000721 TTTTTTTCAG ATGGATTAAG CTGGAATAAT AAAGTATATC TATGAGATGA TTTCTGTAAA CTCTGACTTG CTGAGAAAAA 000800 000801 AGTGAAAAAG CTTTTTCTGG AAGAAACATG GCAACTTAAC CGTTATTAAT CTGGACTAAA TAAAACAGGA AACTGCTTCT 000880 000881 TTA |
Predicted Small Protein
| Name | ENST00000512246.1_smProtein_5:118 |
| Length | 38 |
| Molecular weight | 4369.885 |
| Aromaticity | 0.135135135135 |
| Instability index | 64.8567567568 |
| Isoelectric point | 4.93572998047 |
| Runs | 7 |
| Runs residual | 0.009422266303 |
| Runs probability | 0.0442627501452 |
| Amino acid sequence | MQVFNRCFTIKIFSPQVSNIEESLTRDTSPYEDLGRF |
| Secondary structure | LLEELEEEEEEEELLLLLLHHHHHLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
