Difference between revisions of "ENST00000517550.1"

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sequence = <dnaseq>AGGAAAAGGAAACGCCAAGACATAGAAAACCACGCTTTTCCCGTAGGAAGAACCGATGATGAGCCCTGATGAAAGAAGGAAGAAGACCCGCTGTCTGCGAAGGCCTAAAGGCCGCGGTTGCCAGGAACCGTGGAGGGCCAACTCCTCCCAACCGCCCTGGTGCAAAGTCCCACGCGGCGAAGAGTTTTGGAGCAGCGCTTACCTAGAAAGATGTTTAAATTCTGAACCAGGAATTGTCTCCAACTCCAGGCGCTCAGGGAATCGCCTTTTCCGGTGTCCAGGCGCTCTGCAGACAAATAAACAGCAGAAGCAAATGGTCACCGAGCCGGCAGTCAGCTTTCTGGGAGTGGGAGATGATGGGGAAAGAGGAAAGAATCGTCCGCTCGCCGGACCCTGGCTTGGAGAAGTTCTGCGCTCCGCTGGGACTCTGCGGGCCCTTTGCGTCTACAGACCTATCCCTGCCCCGACTACCCCTTCACTCAGACCCAGGTAACCTCTTACCCCAGCCTGCCCCAAACCAGCCCTCCGCTGTCTGTCTGCCTTCACGCAATTCTGTAGATAGCGCTAAGAGGGGATATCAAATAGCTGAGGAGTCCCCTGACCCCTGGCTTCGGAGCCCCCTAGCACGTGGAACAAGTGGCCGCACACCGGTAGCTGCGCTCTGCCACAGTTCGACCCGTAGCCCCCACAAACCAAAGGAAAAGGACCCAGGATCCACGCTGCGCGCTGCGCCCCCTTTCTCTTGTTCAAACTTGCTTTCTGTGTCCCCAAAGGGAGTGCCCCCTGGTCTTGGGGCTCCTGGCATGACCATGAGCAAGGTGGACTCAGCCATCCTGCACTTTGCCTCTCAATTTCATTCCAGAAAGATCCGCTATGCCGCCACCCACCACTCCCCTGCGTGACACTTAGGAGTATGTAATTATTATGGTTATTATTTTTGCTGTTTCCTTATCTCCAAGTCTAATATTCATGGCTGCTGTACCCCATAAATCGTTCAGACTAATGAGTCACAGAGAGATGCTGCCCAGGTCTCTCACTTTACAATGGCTGCCGCCGCCGCCGTGGCCTCTCTCTCCGCGTTTTTGGCGCTCGCTTGCTCCCTCGCTCGCCCGGCGCGGGTGATTTATGAACGCCGGGAAAATTGAACAAAGCCGCGCGCCCGTCCTGTGGTATCTCTGCAGCCTTCCCCAGCGTGAATCAGAACATTACCAACTGTCTGCGCATCCGTCCCACTTCATCACCAAAGCCAGGATGTGACCGCAGAAAACCCAAGCCCGAACTCACGTTTCCCCGGACGCGGCGCGCTCCCTGGACTCGCAGAAACCCTGCGGAAAAGGCCCCAAGATCTGGTGAGGGCCTGCCAGCTCCGTCCTCCCTGCCGAGGGCTCTCTCCTGCCTTCCTGAAGGAGTTAAAAGCCTTTGGAGATAAATCTGAGGGTGTGTGTTTTTAAAAATCAAATGGGAAGGACACGTTTCTATGCCTTACAGAGACTTGAAGCCTGAAAGCCTGGCCAAGTTTGGGAAGAAGAGGAGCCCTCTCAGAGCTCAAGAGCCTTCCTACTCTTTGGAACTTTTCCACAGTAGGCCAAGCTTGACAAGAGTTCAGCTCAAGTTGAACATACATACACACACTCTCACACACAAATTATGTGAGCCGTCAGAATCCAAGTGAATCCAGCTCAAGCTATCTACAAGGTTTTTACATGCAAGGTCAAGTATCTCAATCCAGAGGACTTTTGTTTTCTTAATGAAAAGCTTAGAAAACACATGAATCTTAGATTTTTAATGTTTTTTAAATGGAGTTTATTCTTAGCACATGGCTTTCTATGTAGCCACATCACAATTTGTACAGTTCCACATAAGTCTAAATGCACTCCCCTCTCCCCAAAGACCGTGCCCCAGAAGGGGACAACAGTATCTCTGTAACAGTGTCTTAAATAAATGCAAGTAAGAAAAACTAACATGTCACACCTACCATCAAGGTCTACACATCTTAAGAATTAAATAATCTTGTGAGGTCCA</dnaseq>|
 
sequence = <dnaseq>AGGAAAAGGAAACGCCAAGACATAGAAAACCACGCTTTTCCCGTAGGAAGAACCGATGATGAGCCCTGATGAAAGAAGGAAGAAGACCCGCTGTCTGCGAAGGCCTAAAGGCCGCGGTTGCCAGGAACCGTGGAGGGCCAACTCCTCCCAACCGCCCTGGTGCAAAGTCCCACGCGGCGAAGAGTTTTGGAGCAGCGCTTACCTAGAAAGATGTTTAAATTCTGAACCAGGAATTGTCTCCAACTCCAGGCGCTCAGGGAATCGCCTTTTCCGGTGTCCAGGCGCTCTGCAGACAAATAAACAGCAGAAGCAAATGGTCACCGAGCCGGCAGTCAGCTTTCTGGGAGTGGGAGATGATGGGGAAAGAGGAAAGAATCGTCCGCTCGCCGGACCCTGGCTTGGAGAAGTTCTGCGCTCCGCTGGGACTCTGCGGGCCCTTTGCGTCTACAGACCTATCCCTGCCCCGACTACCCCTTCACTCAGACCCAGGTAACCTCTTACCCCAGCCTGCCCCAAACCAGCCCTCCGCTGTCTGTCTGCCTTCACGCAATTCTGTAGATAGCGCTAAGAGGGGATATCAAATAGCTGAGGAGTCCCCTGACCCCTGGCTTCGGAGCCCCCTAGCACGTGGAACAAGTGGCCGCACACCGGTAGCTGCGCTCTGCCACAGTTCGACCCGTAGCCCCCACAAACCAAAGGAAAAGGACCCAGGATCCACGCTGCGCGCTGCGCCCCCTTTCTCTTGTTCAAACTTGCTTTCTGTGTCCCCAAAGGGAGTGCCCCCTGGTCTTGGGGCTCCTGGCATGACCATGAGCAAGGTGGACTCAGCCATCCTGCACTTTGCCTCTCAATTTCATTCCAGAAAGATCCGCTATGCCGCCACCCACCACTCCCCTGCGTGACACTTAGGAGTATGTAATTATTATGGTTATTATTTTTGCTGTTTCCTTATCTCCAAGTCTAATATTCATGGCTGCTGTACCCCATAAATCGTTCAGACTAATGAGTCACAGAGAGATGCTGCCCAGGTCTCTCACTTTACAATGGCTGCCGCCGCCGCCGTGGCCTCTCTCTCCGCGTTTTTGGCGCTCGCTTGCTCCCTCGCTCGCCCGGCGCGGGTGATTTATGAACGCCGGGAAAATTGAACAAAGCCGCGCGCCCGTCCTGTGGTATCTCTGCAGCCTTCCCCAGCGTGAATCAGAACATTACCAACTGTCTGCGCATCCGTCCCACTTCATCACCAAAGCCAGGATGTGACCGCAGAAAACCCAAGCCCGAACTCACGTTTCCCCGGACGCGGCGCGCTCCCTGGACTCGCAGAAACCCTGCGGAAAAGGCCCCAAGATCTGGTGAGGGCCTGCCAGCTCCGTCCTCCCTGCCGAGGGCTCTCTCCTGCCTTCCTGAAGGAGTTAAAAGCCTTTGGAGATAAATCTGAGGGTGTGTGTTTTTAAAAATCAAATGGGAAGGACACGTTTCTATGCCTTACAGAGACTTGAAGCCTGAAAGCCTGGCCAAGTTTGGGAAGAAGAGGAGCCCTCTCAGAGCTCAAGAGCCTTCCTACTCTTTGGAACTTTTCCACAGTAGGCCAAGCTTGACAAGAGTTCAGCTCAAGTTGAACATACATACACACACTCTCACACACAAATTATGTGAGCCGTCAGAATCCAAGTGAATCCAGCTCAAGCTATCTACAAGGTTTTTACATGCAAGGTCAAGTATCTCAATCCAGAGGACTTTTGTTTTCTTAATGAAAAGCTTAGAAAACACATGAATCTTAGATTTTTAATGTTTTTTAAATGGAGTTTATTCTTAGCACATGGCTTTCTATGTAGCCACATCACAATTTGTACAGTTCCACATAAGTCTAAATGCACTCCCCTCTCCCCAAAGACCGTGCCCCAGAAGGGGACAACAGTATCTCTGTAACAGTGTCTTAAATAAATGCAAGTAAGAAAAACTAACATGTCACACCTACCATCAAGGTCTACACATCTTAAGAATTAAATAATCTTGTGAGGTCCA</dnaseq>|
 
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[[Category:Antisense]][[Category:ENSG00000253552.3]][[Category:lnc-EVX1-10]]
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[[Category:Antisense]][[Category:ENSG00000253552.3]][[Category:lnc-EVX1-10]][[Category:Transcripts]]

Latest revision as of 16:53, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000517550.1

Source

Gencode19

Same with

lnc-EVX1-10:6

Classification

antisense

Length

2022 nt

Genomic location

chr7+:27161536..27168379

Exon number

4

Exons

27161536..27161645,27162086..27162285,27163079..27164229,27167819..27168379

Genome context

Sequence
000001 AGGAAAAGGA AACGCCAAGA CATAGAAAAC CACGCTTTTC CCGTAGGAAG AACCGATGAT GAGCCCTGAT GAAAGAAGGA 000080
000081 AGAAGACCCG CTGTCTGCGA AGGCCTAAAG GCCGCGGTTG CCAGGAACCG TGGAGGGCCA ACTCCTCCCA ACCGCCCTGG 000160
000161 TGCAAAGTCC CACGCGGCGA AGAGTTTTGG AGCAGCGCTT ACCTAGAAAG ATGTTTAAAT TCTGAACCAG GAATTGTCTC 000240
000241 CAACTCCAGG CGCTCAGGGA ATCGCCTTTT CCGGTGTCCA GGCGCTCTGC AGACAAATAA ACAGCAGAAG CAAATGGTCA 000320
000321 CCGAGCCGGC AGTCAGCTTT CTGGGAGTGG GAGATGATGG GGAAAGAGGA AAGAATCGTC CGCTCGCCGG ACCCTGGCTT 000400
000401 GGAGAAGTTC TGCGCTCCGC TGGGACTCTG CGGGCCCTTT GCGTCTACAG ACCTATCCCT GCCCCGACTA CCCCTTCACT 000480
000481 CAGACCCAGG TAACCTCTTA CCCCAGCCTG CCCCAAACCA GCCCTCCGCT GTCTGTCTGC CTTCACGCAA TTCTGTAGAT 000560
000561 AGCGCTAAGA GGGGATATCA AATAGCTGAG GAGTCCCCTG ACCCCTGGCT TCGGAGCCCC CTAGCACGTG GAACAAGTGG 000640
000641 CCGCACACCG GTAGCTGCGC TCTGCCACAG TTCGACCCGT AGCCCCCACA AACCAAAGGA AAAGGACCCA GGATCCACGC 000720
000721 TGCGCGCTGC GCCCCCTTTC TCTTGTTCAA ACTTGCTTTC TGTGTCCCCA AAGGGAGTGC CCCCTGGTCT TGGGGCTCCT 000800
000801 GGCATGACCA TGAGCAAGGT GGACTCAGCC ATCCTGCACT TTGCCTCTCA ATTTCATTCC AGAAAGATCC GCTATGCCGC 000880
000881 CACCCACCAC TCCCCTGCGT GACACTTAGG AGTATGTAAT TATTATGGTT ATTATTTTTG CTGTTTCCTT ATCTCCAAGT 000960
000961 CTAATATTCA TGGCTGCTGT ACCCCATAAA TCGTTCAGAC TAATGAGTCA CAGAGAGATG CTGCCCAGGT CTCTCACTTT 001040
001041 ACAATGGCTG CCGCCGCCGC CGTGGCCTCT CTCTCCGCGT TTTTGGCGCT CGCTTGCTCC CTCGCTCGCC CGGCGCGGGT 001120
001121 GATTTATGAA CGCCGGGAAA ATTGAACAAA GCCGCGCGCC CGTCCTGTGG TATCTCTGCA GCCTTCCCCA GCGTGAATCA 001200
001201 GAACATTACC AACTGTCTGC GCATCCGTCC CACTTCATCA CCAAAGCCAG GATGTGACCG CAGAAAACCC AAGCCCGAAC 001280
001281 TCACGTTTCC CCGGACGCGG CGCGCTCCCT GGACTCGCAG AAACCCTGCG GAAAAGGCCC CAAGATCTGG TGAGGGCCTG 001360
001361 CCAGCTCCGT CCTCCCTGCC GAGGGCTCTC TCCTGCCTTC CTGAAGGAGT TAAAAGCCTT TGGAGATAAA TCTGAGGGTG 001440
001441 TGTGTTTTTA AAAATCAAAT GGGAAGGACA CGTTTCTATG CCTTACAGAG ACTTGAAGCC TGAAAGCCTG GCCAAGTTTG 001520
001521 GGAAGAAGAG GAGCCCTCTC AGAGCTCAAG AGCCTTCCTA CTCTTTGGAA CTTTTCCACA GTAGGCCAAG CTTGACAAGA 001600
001601 GTTCAGCTCA AGTTGAACAT ACATACACAC ACTCTCACAC ACAAATTATG TGAGCCGTCA GAATCCAAGT GAATCCAGCT 001680
001681 CAAGCTATCT ACAAGGTTTT TACATGCAAG GTCAAGTATC TCAATCCAGA GGACTTTTGT TTTCTTAATG AAAAGCTTAG 001760
001761 AAAACACATG AATCTTAGAT TTTTAATGTT TTTTAAATGG AGTTTATTCT TAGCACATGG CTTTCTATGT AGCCACATCA 001840
001841 CAATTTGTAC AGTTCCACAT AAGTCTAAAT GCACTCCCCT CTCCCCAAAG ACCGTGCCCC AGAAGGGGAC AACAGTATCT 001920
001921 CTGTAACAGT GTCTTAAATA AATGCAAGTA AGAAAAACTA ACATGTCACA CCTACCATCA AGGTCTACAC ATCTTAAGAA 002000
002001 TTAAATAATC TTGTGAGGTC CA
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