Difference between revisions of "ENST00000541578.1"
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sequence = <dnaseq>CTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTACTACTAACCAATAACCTGCTTGGCTCAAAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGATACAAGGGCTTGGTTTTGTTACCCAGGCTGGTTTCAAGGCCATAGCTTTAAGAGATCCTCTCACCACAGATTTCCAAAGTGCTGGGATTGCAGGTGTGATTCATGGCACCCAGACTTTGCTGCCTTTCTTACATGATCC</dnaseq>| | sequence = <dnaseq>CTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTACTACTAACCAATAACCTGCTTGGCTCAAAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGATACAAGGGCTTGGTTTTGTTACCCAGGCTGGTTTCAAGGCCATAGCTTTAAGAGATCCTCTCACCACAGATTTCCAAAGTGCTGGGATTGCAGGTGTGATTCATGGCACCCAGACTTTGCTGCCTTTCTTACATGATCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-WDR74-1]][[Category:NONHSAG008552]][[Category:ENSG00000255717.2]] | + | [[Category:Intergenic]][[Category:lnc-WDR74-1]][[Category:NONHSAG008552]][[Category:ENSG00000255717.2]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 17:22, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000541578.1 |
| Source |
Gencode19 |
| Same with |
lnc-WDR74-1:9,NONHSAT021837 |
| Classification |
intergenic |
| Length |
588 nt |
| Genomic location |
chr11-:62619769..62622960 |
| Exon number |
11 |
| Exons |
62619769..62619908,62620128..62620153,62620283..62620311,62620547..62620587,62621024..62621062,62621273..62621305,62621490..62621536,62621991..62622023,62622360..62622410,62622605..62622688,62622896..62622960 |
| Genome context |
|
| Sequence |
000001 CTTATTGGGC TCCTGTCTGC AGGATTTACG CGCACGTTGG AACCGAAGAG AGCTCTGTTG TTGCAATGTT CAGCCCACAA 000080
000081 GAGCTTACTG GTGAAGGAAT GGGACAAGAC CCATCTTTAT GCAAAGCCAG CGTTACAGTA ATGTTCCAGC ATCTCATAAT 000160 000161 CTATCCTGGG GAATTCAGCT GCCTCCCAGG GTGAATACAG GTATTCCTGA TGACAGTCTG CCTCTATCTT ACAGAGCAGC 000240 000241 TTGTTGCTAT ATACCATTGA AAAGCCTTCA GAGCTGAGAG GTACTACTAA CCAATAACCT GCTTGGCTCA AAGGGCCAGC 000320 000321 ACCTTCTCTC TAAAGCCCAA GAGGAGTTTG AGGAAAACTA GGTGTCTGTG TTCACTCCAG GCTGAAGTTA CAGGTCTGAG 000400 000401 CAAATAAGGT GTATAAAAAA TGGAATCTGT CTTGGAGGAC ATCAGAAGAT ACAAGGGCTT GGTTTTGTTA CCCAGGCTGG 000480 000481 TTTCAAGGCC ATAGCTTTAA GAGATCCTCT CACCACAGAT TTCCAAAGTG CTGGGATTGC AGGTGTGATT CATGGCACCC 000560 000561 AGACTTTGCT GCCTTTCTTA CATGATCC |
Predicted Small Protein
| Name | ENST00000541578.1_smProtein_65:193 |
| Length | 43 |
| Molecular weight | 4547.2321 |
| Aromaticity | 0.0952380952381 |
| Instability index | 50.8047619048 |
| Isoelectric point | 4.39630126953 |
| Runs | 8 |
| Runs residual | 0.0143158529234 |
| Runs probability | 0.0124977919095 |
| Amino acid sequence | MFSPQELTGEGMGQDPSLCKASVTVMFQHLIIYPGEFSCLPG |
| Secondary structure | LLLLLLLLLLLLLLLLHHHHLLLLHHHHEEEELLLEEELLLL |
| PRMN | - |
| PiMo | - |
