Difference between revisions of "ENST00000541861.1"
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sequence = <dnaseq>GTTGTCGCTGTTGCAGCCGAGTTCAGCCGGGAGCAGAGCGAACCGCACCGGCCCGAGCGGAGCGCCGCACGTTCCCAACCGCGAGGCCAGACATCTGACTGTTGGTGTGAGACCAGTGCTCCTGGTGGTGTGCCCTGAGCCATGGAGGCGCCTTTGCAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTCAGAGGGGCTGCTCCCGGTCATCACCCCCATGGCAGGCAACCAGAGGGTCGAGGACCCTGCACGGAGCTGTATGGAGGGCAAGAGCTTCCTACAGAAAAGTCCCAGCAAGGAGCCACACTTCACTGACTTCGAGGGGAAGACATCATTCGGGATGTCAGTGTTCAACCTCAGCAATGCCATCATGGGCAGCGGCATCCTGGGACTCGCCTATGCCATGGCCAATACGGGCATTATCCTTTTCCTGTTCCTGTTGACAGCTGTCGCCTTGCTCTCCAGCTACTCCATCCACCTGCTACTCAAGTCCTCAGGGGTCGTGGGCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGGACCCCAGGAAAGCTGGCAGCAGCCCTGGCCATCACGCTCCAGAACATCGGAGCCATGTCCAGCTACCTGTACATCATCAAGTCTGAGCTGCCACTTGTCATACAGACCTTCCTGAACCTGGAGGAGAAAACCTCGGACTGGTACATGAACGGGAACTACCTGGTAATCCTTGTCTCTGTCACCATCATTCTGCCCCTGGCACTGATGCGGCAGCTTGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAGCTGCATGGTGTTCTTCCTAATTGCAGTCATCTACAAAAAGTTCCACGTGCCCTGCCCACTGCCCCCCAACTTCAACAACACCACAGGCAACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCTGCAGGTCGAGCCTGAGGCTTCAGCCTTCTGCACTCCCAGCTACTTCACGCTCAACTCACAGACAGCATACACCATCCCCATCATGGCCTTCGCCTTCGTCTGCCACCCCGAGGTGCTGCCCATCTATACTGAGCTCAAGGACCCCTCCAAGAAGAAGATGCAGCACATCTCCAACCTGTCCATCGCTGTCATGTACATCATGTACTTCCTGGCTGCCCTCTTCGGCTACCTCACCTTCTACAACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGACGTCCTGATCCTGTGTGTGCGCGTGGCCGTGCTGACAGCAGTCACGCTCACAGTGCCCATCGTTCTGTTCCCGGTGCGCCGCGCCATCCAGCAGATGCTGTTTCCAAACCAGGAGTTCAGCTGGCTGCGGCATGTGCTTATTGCCGTTGGCCTGCTCACTTGTATCAACCTGCTGGTCATCTTTGCCCCCAACATCCTGGGCATCTTTGGGGTCATCGGTGCCACATCTGCCCCATTCCTCATCTTCATCTTCCCTGCCATCTTCTACTTCCGAATCATGCCCACGGAGAAGGAGCCTGCAAGATCCACCCCCAAAATCCTGGCCCTGTGTTTTGCTATGCTTGGCTTCTTGCTGATGACCATGAGCTTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCGGCATGGAGGAAACCACTAGGGTGACCCTCATCCTGTTCTGTCTACTCACCCTAGCAGCCCTGCCCAGACTCTTCAGCCCCTGCTCCCATCCAGTGGCCAGTCGGGGGAGGAGAAAGACGCGATTAACACTGTGGCATTCAGCCAGGCCCCATGTCCTCTCTGTGGAAGGTTTTTGTTCAAGAGCCAGGACCAAGGCCCTTGGGCCACTACCCTGCTAGGCTCTGGAGCTGTAGAGGCTTCCTGAACTGGGAGCAGGGTAGGGCTGTCGCCTTAGATCCCGCCCAAGCCCCTCATTCCCTCCTTGCACAGATGCATACACTGGGGCCCAGCAGCTGCCTCCTGAGGTGACACAGCCTGTAGGAACATACACAGCTGGGATCAGCCTGCAGCCATCCCCCGACCCTGCTGCTAGGCCACGGTCTGCGCCCTGGGGCCTCATCTCCCCCAGCCCACTTGTTTTCCCCCCTTTTATTCCCTAGGCCCTTTTCAGACTCCTGGGCCCTTGGATACTCTTCTCCCATCTCCCTTCACAGGATGACACCCTCCCATACCCCATAGCTGGGGCCAGCAGGTTCTGCTGAGGGTGGGGCTGGTGTAGGGACCCCCAAGAGACCCCTGTCCTGTCCCTTCACCAGTCCTGGGGAGGCTGGGACTCCCCCTGCCACAAGCCTGGGCCACAGCTCACATTCCACTGCTGGGAGAAGAAACAGGCCGAGGCCCAGAGTGGCCTGCCCCCGGGAGCCAAAGACCCCAGTGGCCACACTGGGATAGGGTGGGGAGGCTGGCAGCCCTCTTTTATAAATATTATAC</dnaseq>| | sequence = <dnaseq>GTTGTCGCTGTTGCAGCCGAGTTCAGCCGGGAGCAGAGCGAACCGCACCGGCCCGAGCGGAGCGCCGCACGTTCCCAACCGCGAGGCCAGACATCTGACTGTTGGTGTGAGACCAGTGCTCCTGGTGGTGTGCCCTGAGCCATGGAGGCGCCTTTGCAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTCAGAGGGGCTGCTCCCGGTCATCACCCCCATGGCAGGCAACCAGAGGGTCGAGGACCCTGCACGGAGCTGTATGGAGGGCAAGAGCTTCCTACAGAAAAGTCCCAGCAAGGAGCCACACTTCACTGACTTCGAGGGGAAGACATCATTCGGGATGTCAGTGTTCAACCTCAGCAATGCCATCATGGGCAGCGGCATCCTGGGACTCGCCTATGCCATGGCCAATACGGGCATTATCCTTTTCCTGTTCCTGTTGACAGCTGTCGCCTTGCTCTCCAGCTACTCCATCCACCTGCTACTCAAGTCCTCAGGGGTCGTGGGCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGGACCCCAGGAAAGCTGGCAGCAGCCCTGGCCATCACGCTCCAGAACATCGGAGCCATGTCCAGCTACCTGTACATCATCAAGTCTGAGCTGCCACTTGTCATACAGACCTTCCTGAACCTGGAGGAGAAAACCTCGGACTGGTACATGAACGGGAACTACCTGGTAATCCTTGTCTCTGTCACCATCATTCTGCCCCTGGCACTGATGCGGCAGCTTGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAGCTGCATGGTGTTCTTCCTAATTGCAGTCATCTACAAAAAGTTCCACGTGCCCTGCCCACTGCCCCCCAACTTCAACAACACCACAGGCAACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCTGCAGGTCGAGCCTGAGGCTTCAGCCTTCTGCACTCCCAGCTACTTCACGCTCAACTCACAGACAGCATACACCATCCCCATCATGGCCTTCGCCTTCGTCTGCCACCCCGAGGTGCTGCCCATCTATACTGAGCTCAAGGACCCCTCCAAGAAGAAGATGCAGCACATCTCCAACCTGTCCATCGCTGTCATGTACATCATGTACTTCCTGGCTGCCCTCTTCGGCTACCTCACCTTCTACAACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGACGTCCTGATCCTGTGTGTGCGCGTGGCCGTGCTGACAGCAGTCACGCTCACAGTGCCCATCGTTCTGTTCCCGGTGCGCCGCGCCATCCAGCAGATGCTGTTTCCAAACCAGGAGTTCAGCTGGCTGCGGCATGTGCTTATTGCCGTTGGCCTGCTCACTTGTATCAACCTGCTGGTCATCTTTGCCCCCAACATCCTGGGCATCTTTGGGGTCATCGGTGCCACATCTGCCCCATTCCTCATCTTCATCTTCCCTGCCATCTTCTACTTCCGAATCATGCCCACGGAGAAGGAGCCTGCAAGATCCACCCCCAAAATCCTGGCCCTGTGTTTTGCTATGCTTGGCTTCTTGCTGATGACCATGAGCTTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCGGCATGGAGGAAACCACTAGGGTGACCCTCATCCTGTTCTGTCTACTCACCCTAGCAGCCCTGCCCAGACTCTTCAGCCCCTGCTCCCATCCAGTGGCCAGTCGGGGGAGGAGAAAGACGCGATTAACACTGTGGCATTCAGCCAGGCCCCATGTCCTCTCTGTGGAAGGTTTTTGTTCAAGAGCCAGGACCAAGGCCCTTGGGCCACTACCCTGCTAGGCTCTGGAGCTGTAGAGGCTTCCTGAACTGGGAGCAGGGTAGGGCTGTCGCCTTAGATCCCGCCCAAGCCCCTCATTCCCTCCTTGCACAGATGCATACACTGGGGCCCAGCAGCTGCCTCCTGAGGTGACACAGCCTGTAGGAACATACACAGCTGGGATCAGCCTGCAGCCATCCCCCGACCCTGCTGCTAGGCCACGGTCTGCGCCCTGGGGCCTCATCTCCCCCAGCCCACTTGTTTTCCCCCCTTTTATTCCCTAGGCCCTTTTCAGACTCCTGGGCCCTTGGATACTCTTCTCCCATCTCCCTTCACAGGATGACACCCTCCCATACCCCATAGCTGGGGCCAGCAGGTTCTGCTGAGGGTGGGGCTGGTGTAGGGACCCCCAAGAGACCCCTGTCCTGTCCCTTCACCAGTCCTGGGGAGGCTGGGACTCCCCCTGCCACAAGCCTGGGCCACAGCTCACATTCCACTGCTGGGAGAAGAAACAGGCCGAGGCCCAGAGTGGCCTGCCCCCGGGAGCCAAAGACCCCAGTGGCCACACTGGGATAGGGTGGGGAGGCTGGCAGCCCTCTTTTATAAATATTATAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:ENSG00000188338.10]] | + | [[Category:Sense]][[Category:ENSG00000188338.10]][[Category:lnc-GNAT1-1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 17:23, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000541861.1 |
| Source |
Gencode19 |
| Same with |
lnc-GNAT1-1:3 |
| Classification |
sense |
| Length |
2447 nt |
| Genomic location |
chr3+:50242692..50258400 |
| Exon number |
16 |
| Exons |
50242692..50242781,50251582..50251734,50251835..50251915,50252085..50252200,50252818..50252891,50252976..50253068,50253172..50253253,50254670..50254752,50254847..50254905,50255108..50255272,50255349..50255428,50255702..50255802,50256025..50256149,50256236..50256380,50257313..50257416,50257505..50258400 |
| Genome context |
|
| Sequence |
000001 GTTGTCGCTG TTGCAGCCGA GTTCAGCCGG GAGCAGAGCG AACCGCACCG GCCCGAGCGG AGCGCCGCAC GTTCCCAACC 000080
000081 GCGAGGCCAG ACATCTGACT GTTGGTGTGA GACCAGTGCT CCTGGTGGTG TGCCCTGAGC CATGGAGGCG CCTTTGCAGA 000160 000161 CAGAGATGGT GGAGCTGGTG CCCAATGGCA AACACTCAGA GGGGCTGCTC CCGGTCATCA CCCCCATGGC AGGCAACCAG 000240 000241 AGGGTCGAGG ACCCTGCACG GAGCTGTATG GAGGGCAAGA GCTTCCTACA GAAAAGTCCC AGCAAGGAGC CACACTTCAC 000320 000321 TGACTTCGAG GGGAAGACAT CATTCGGGAT GTCAGTGTTC AACCTCAGCA ATGCCATCAT GGGCAGCGGC ATCCTGGGAC 000400 000401 TCGCCTATGC CATGGCCAAT ACGGGCATTA TCCTTTTCCT GTTCCTGTTG ACAGCTGTCG CCTTGCTCTC CAGCTACTCC 000480 000481 ATCCACCTGC TACTCAAGTC CTCAGGGGTC GTGGGCATCC GTGCCTATGA GCAGCTGGGC TACCGTGCCT TTGGGACCCC 000560 000561 AGGAAAGCTG GCAGCAGCCC TGGCCATCAC GCTCCAGAAC ATCGGAGCCA TGTCCAGCTA CCTGTACATC ATCAAGTCTG 000640 000641 AGCTGCCACT TGTCATACAG ACCTTCCTGA ACCTGGAGGA GAAAACCTCG GACTGGTACA TGAACGGGAA CTACCTGGTA 000720 000721 ATCCTTGTCT CTGTCACCAT CATTCTGCCC CTGGCACTGA TGCGGCAGCT TGGCTACCTG GGCTACTCCA GCGGCTTCTC 000800 000801 TCTTAGCTGC ATGGTGTTCT TCCTAATTGC AGTCATCTAC AAAAAGTTCC ACGTGCCCTG CCCACTGCCC CCCAACTTCA 000880 000881 ACAACACCAC AGGCAACTTC AGCCACGTGG AGATCGTGAA GGAGAAGGTG CAGCTGCAGG TCGAGCCTGA GGCTTCAGCC 000960 000961 TTCTGCACTC CCAGCTACTT CACGCTCAAC TCACAGACAG CATACACCAT CCCCATCATG GCCTTCGCCT TCGTCTGCCA 001040 001041 CCCCGAGGTG CTGCCCATCT ATACTGAGCT CAAGGACCCC TCCAAGAAGA AGATGCAGCA CATCTCCAAC CTGTCCATCG 001120 001121 CTGTCATGTA CATCATGTAC TTCCTGGCTG CCCTCTTCGG CTACCTCACC TTCTACAACG GGGTGGAGTC GGAGCTGCTG 001200 001201 CACACCTACA GCAAGGTGGA CCCGTTTGAC GTCCTGATCC TGTGTGTGCG CGTGGCCGTG CTGACAGCAG TCACGCTCAC 001280 001281 AGTGCCCATC GTTCTGTTCC CGGTGCGCCG CGCCATCCAG CAGATGCTGT TTCCAAACCA GGAGTTCAGC TGGCTGCGGC 001360 001361 ATGTGCTTAT TGCCGTTGGC CTGCTCACTT GTATCAACCT GCTGGTCATC TTTGCCCCCA ACATCCTGGG CATCTTTGGG 001440 001441 GTCATCGGTG CCACATCTGC CCCATTCCTC ATCTTCATCT TCCCTGCCAT CTTCTACTTC CGAATCATGC CCACGGAGAA 001520 001521 GGAGCCTGCA AGATCCACCC CCAAAATCCT GGCCCTGTGT TTTGCTATGC TTGGCTTCTT GCTGATGACC ATGAGCTTGA 001600 001601 GCTTCATCAT CATTGACTGG GCCTCAGGGA CCAGCCGGCA TGGAGGAAAC CACTAGGGTG ACCCTCATCC TGTTCTGTCT 001680 001681 ACTCACCCTA GCAGCCCTGC CCAGACTCTT CAGCCCCTGC TCCCATCCAG TGGCCAGTCG GGGGAGGAGA AAGACGCGAT 001760 001761 TAACACTGTG GCATTCAGCC AGGCCCCATG TCCTCTCTGT GGAAGGTTTT TGTTCAAGAG CCAGGACCAA GGCCCTTGGG 001840 001841 CCACTACCCT GCTAGGCTCT GGAGCTGTAG AGGCTTCCTG AACTGGGAGC AGGGTAGGGC TGTCGCCTTA GATCCCGCCC 001920 001921 AAGCCCCTCA TTCCCTCCTT GCACAGATGC ATACACTGGG GCCCAGCAGC TGCCTCCTGA GGTGACACAG CCTGTAGGAA 002000 002001 CATACACAGC TGGGATCAGC CTGCAGCCAT CCCCCGACCC TGCTGCTAGG CCACGGTCTG CGCCCTGGGG CCTCATCTCC 002080 002081 CCCAGCCCAC TTGTTTTCCC CCCTTTTATT CCCTAGGCCC TTTTCAGACT CCTGGGCCCT TGGATACTCT TCTCCCATCT 002160 002161 CCCTTCACAG GATGACACCC TCCCATACCC CATAGCTGGG GCCAGCAGGT TCTGCTGAGG GTGGGGCTGG TGTAGGGACC 002240 002241 CCCAAGAGAC CCCTGTCCTG TCCCTTCACC AGTCCTGGGG AGGCTGGGAC TCCCCCTGCC ACAAGCCTGG GCCACAGCTC 002320 002321 ACATTCCACT GCTGGGAGAA GAAACAGGCC GAGGCCCAGA GTGGCCTGCC CCCGGGAGCC AAAGACCCCA GTGGCCACAC 002400 002401 TGGGATAGGG TGGGGAGGCT GGCAGCCCTC TTTTATAAAT ATTATAC |
