Difference between revisions of "ENST00000542089.1"

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sequence = <dnaseq>GCATCCTCATTTAATAGAGCTTGAAATTACTATAATCTGTAAAGTACAGCGAGAAGAAGAAGTTTCACCTGCCTGCACATCTGTCGTTGACTCTCCATCTGACTTGGAGGGACTCTGAGGGACCAACCTGAGCCTGAGAAGAGGCAAGATTCCCCTTCAAGGACACACTGGGAACTTACGGACCTCTTTCTCCATGGTGCAGAGCGCAGAGGCTACCTGAGAATATCCAGAGACTACAGAGGTCATCAAGTTGACGCATCAATGTTTACATGTGAACAAACAGACGCATAATAGCTCTTGAGCTTGCCATTGGGAAGTGAAAATCAACTGCTTGAATAAATGTAAGGACTCAGGTAGACATCACCTTGTGACTCAACAGCAGCCAATAAGATGGAAATAAAGGCCATGAAGTTATCGGATGGCATCTACAAGGAATACTTAGATGAGGAGGTGACTCTGGTAGCAATTGTTCTTTTGTCTTTCTCACCTTCCTTCTTGTCCTGTCTGGGATGCTGAAGTGATGGCTGGTATACAGATGCCCTGTTGTGATGTTGAGATAAACATGAGAATAAAAGTCGGCGATTACAGATGGCAGAGAAGAGAGAGAAAGATAGGATGTAGGTGGATATTGACGGAACTAAGTTTCTATTGCACAAGTTCTACCACCAACCTCTGGACTTCATGATATGTGAGGGAGAAATAAACTCCTATTTTAGAAGAGATCTATGTTACCTGCAACTGAACGGAATGCTTAATTGGCACATCCTATGTGCTCCAAACCTTCCTTAATTTCTGTGTGTAAGGCATACTTAGTCTTTACCCATTATTCTGTTCACATTCATTCACTTGATCAGCCTCCCAACTCTATGGTAAAGAGTTTACTACAGTTTACTCTATTAGTAAGGGAGATTCTGGAGCAAGCCCCACAAATCATAGATTGAATACCCATTCATTAAGAGAGAGATTTAAAGATACTTCTATCCAAACACATTTTAAATTTCCAGCACCTTTGAGGTGGTGGAGGTTCATGGTGGTTGATAGGGTTTAAATGACTTGTGATTCAAGCTCCATATTACAATGTAACAGTGCAAAAGTTCATTTTTTTAAATTTATTTTACTTTAAGTTCTGGTATACATGTGTAGAACATGCGGGTTTGTTACATAGGTATACATGTGCCATGGTGGTTTGCTGCACCTATCAAACCGTCACCTAGGTTTTAAGAACCACATGCATTAGGTATTTGACCTAATGCTCTCCCTCATGTTGCCCCCCAACTCCCTGACAGGGCCCAGTGTGTGATGTTCCCCTCCCTGTGTCCATGTGTTCTCATTGTTCAACTCCCACTTATGAGTGAGAACATGTGGTGTTTGATTTTCTGTTCCTGTGTTAGTTTGCTGAGAATGATGGCTTCCAGCTTCATCCATGTCCCTGCAAAGGACACGAACTCATTCTTTTTTATGGCTTCATAATATTCCATGAGTCTGGATTTGGTTACAGATAGAGCTGGACAAGCCTTAGCTATATCTAATGGCTTTTGACATGTTATATCAATTTCTTACTGCTTTTGTAAATGAATATATTAAGAAGAAAAAATTACAAATGACCCTTTCTTCACAAACTTTTAGGGTAATCAAGTTCAGTTATTAAAAAATGGATGTTTGCAACATTCATAGTAATTATTTTCAGAAAATTAAAAATGATTAAAAATTATATTTTCATCCCATTCAGATATTATATATTTAACTGTGAGATAATTCTCAGAGATAAATGTCAACTTTTAAAAAATGCTAAATAAATTAAATCAAAATATCCCCTCTAAAATAAATAAATTAGCTCCGATTATTTCTTCTTTTTAAATTTTTCCTTATAGTTGTAAAAATAAAGTGAACGTTTTGGCTCATTTCCTCATTAAAGTTTGAATTTTCCAGTCA</dnaseq>|
 
sequence = <dnaseq>GCATCCTCATTTAATAGAGCTTGAAATTACTATAATCTGTAAAGTACAGCGAGAAGAAGAAGTTTCACCTGCCTGCACATCTGTCGTTGACTCTCCATCTGACTTGGAGGGACTCTGAGGGACCAACCTGAGCCTGAGAAGAGGCAAGATTCCCCTTCAAGGACACACTGGGAACTTACGGACCTCTTTCTCCATGGTGCAGAGCGCAGAGGCTACCTGAGAATATCCAGAGACTACAGAGGTCATCAAGTTGACGCATCAATGTTTACATGTGAACAAACAGACGCATAATAGCTCTTGAGCTTGCCATTGGGAAGTGAAAATCAACTGCTTGAATAAATGTAAGGACTCAGGTAGACATCACCTTGTGACTCAACAGCAGCCAATAAGATGGAAATAAAGGCCATGAAGTTATCGGATGGCATCTACAAGGAATACTTAGATGAGGAGGTGACTCTGGTAGCAATTGTTCTTTTGTCTTTCTCACCTTCCTTCTTGTCCTGTCTGGGATGCTGAAGTGATGGCTGGTATACAGATGCCCTGTTGTGATGTTGAGATAAACATGAGAATAAAAGTCGGCGATTACAGATGGCAGAGAAGAGAGAGAAAGATAGGATGTAGGTGGATATTGACGGAACTAAGTTTCTATTGCACAAGTTCTACCACCAACCTCTGGACTTCATGATATGTGAGGGAGAAATAAACTCCTATTTTAGAAGAGATCTATGTTACCTGCAACTGAACGGAATGCTTAATTGGCACATCCTATGTGCTCCAAACCTTCCTTAATTTCTGTGTGTAAGGCATACTTAGTCTTTACCCATTATTCTGTTCACATTCATTCACTTGATCAGCCTCCCAACTCTATGGTAAAGAGTTTACTACAGTTTACTCTATTAGTAAGGGAGATTCTGGAGCAAGCCCCACAAATCATAGATTGAATACCCATTCATTAAGAGAGAGATTTAAAGATACTTCTATCCAAACACATTTTAAATTTCCAGCACCTTTGAGGTGGTGGAGGTTCATGGTGGTTGATAGGGTTTAAATGACTTGTGATTCAAGCTCCATATTACAATGTAACAGTGCAAAAGTTCATTTTTTTAAATTTATTTTACTTTAAGTTCTGGTATACATGTGTAGAACATGCGGGTTTGTTACATAGGTATACATGTGCCATGGTGGTTTGCTGCACCTATCAAACCGTCACCTAGGTTTTAAGAACCACATGCATTAGGTATTTGACCTAATGCTCTCCCTCATGTTGCCCCCCAACTCCCTGACAGGGCCCAGTGTGTGATGTTCCCCTCCCTGTGTCCATGTGTTCTCATTGTTCAACTCCCACTTATGAGTGAGAACATGTGGTGTTTGATTTTCTGTTCCTGTGTTAGTTTGCTGAGAATGATGGCTTCCAGCTTCATCCATGTCCCTGCAAAGGACACGAACTCATTCTTTTTTATGGCTTCATAATATTCCATGAGTCTGGATTTGGTTACAGATAGAGCTGGACAAGCCTTAGCTATATCTAATGGCTTTTGACATGTTATATCAATTTCTTACTGCTTTTGTAAATGAATATATTAAGAAGAAAAAATTACAAATGACCCTTTCTTCACAAACTTTTAGGGTAATCAAGTTCAGTTATTAAAAAATGGATGTTTGCAACATTCATAGTAATTATTTTCAGAAAATTAAAAATGATTAAAAATTATATTTTCATCCCATTCAGATATTATATATTTAACTGTGAGATAATTCTCAGAGATAAATGTCAACTTTTAAAAAATGCTAAATAAATTAAATCAAAATATCCCCTCTAAAATAAATAAATTAGCTCCGATTATTTCTTCTTTTTAAATTTTTCCTTATAGTTGTAAAAATAAAGTGAACGTTTTGGCTCATTTCCTCATTAAAGTTTGAATTTTCCAGTCA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-TMEM132C-2]][[Category:NONHSAG012719]][[Category:ENSG00000256193.1]]
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[[Category:Intergenic]][[Category:lnc-TMEM132C-2]][[Category:NONHSAG012719]][[Category:ENSG00000256193.1]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 17:23, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000542089.1

Source

Gencode19

Same with

lnc-TMEM132C-2:4,NONHSAT031889

Classification

intergenic

Length

1932 nt

Genomic location

chr12+:128400017..128436097

Exon number

4

Exons

128400017..128400227,128418835..128418894,128429263..128429344,128434519..128436097

Genome context

Sequence
000001 GCATCCTCAT TTAATAGAGC TTGAAATTAC TATAATCTGT AAAGTACAGC GAGAAGAAGA AGTTTCACCT GCCTGCACAT 000080
000081 CTGTCGTTGA CTCTCCATCT GACTTGGAGG GACTCTGAGG GACCAACCTG AGCCTGAGAA GAGGCAAGAT TCCCCTTCAA 000160
000161 GGACACACTG GGAACTTACG GACCTCTTTC TCCATGGTGC AGAGCGCAGA GGCTACCTGA GAATATCCAG AGACTACAGA 000240
000241 GGTCATCAAG TTGACGCATC AATGTTTACA TGTGAACAAA CAGACGCATA ATAGCTCTTG AGCTTGCCAT TGGGAAGTGA 000320
000321 AAATCAACTG CTTGAATAAA TGTAAGGACT CAGGTAGACA TCACCTTGTG ACTCAACAGC AGCCAATAAG ATGGAAATAA 000400
000401 AGGCCATGAA GTTATCGGAT GGCATCTACA AGGAATACTT AGATGAGGAG GTGACTCTGG TAGCAATTGT TCTTTTGTCT 000480
000481 TTCTCACCTT CCTTCTTGTC CTGTCTGGGA TGCTGAAGTG ATGGCTGGTA TACAGATGCC CTGTTGTGAT GTTGAGATAA 000560
000561 ACATGAGAAT AAAAGTCGGC GATTACAGAT GGCAGAGAAG AGAGAGAAAG ATAGGATGTA GGTGGATATT GACGGAACTA 000640
000641 AGTTTCTATT GCACAAGTTC TACCACCAAC CTCTGGACTT CATGATATGT GAGGGAGAAA TAAACTCCTA TTTTAGAAGA 000720
000721 GATCTATGTT ACCTGCAACT GAACGGAATG CTTAATTGGC ACATCCTATG TGCTCCAAAC CTTCCTTAAT TTCTGTGTGT 000800
000801 AAGGCATACT TAGTCTTTAC CCATTATTCT GTTCACATTC ATTCACTTGA TCAGCCTCCC AACTCTATGG TAAAGAGTTT 000880
000881 ACTACAGTTT ACTCTATTAG TAAGGGAGAT TCTGGAGCAA GCCCCACAAA TCATAGATTG AATACCCATT CATTAAGAGA 000960
000961 GAGATTTAAA GATACTTCTA TCCAAACACA TTTTAAATTT CCAGCACCTT TGAGGTGGTG GAGGTTCATG GTGGTTGATA 001040
001041 GGGTTTAAAT GACTTGTGAT TCAAGCTCCA TATTACAATG TAACAGTGCA AAAGTTCATT TTTTTAAATT TATTTTACTT 001120
001121 TAAGTTCTGG TATACATGTG TAGAACATGC GGGTTTGTTA CATAGGTATA CATGTGCCAT GGTGGTTTGC TGCACCTATC 001200
001201 AAACCGTCAC CTAGGTTTTA AGAACCACAT GCATTAGGTA TTTGACCTAA TGCTCTCCCT CATGTTGCCC CCCAACTCCC 001280
001281 TGACAGGGCC CAGTGTGTGA TGTTCCCCTC CCTGTGTCCA TGTGTTCTCA TTGTTCAACT CCCACTTATG AGTGAGAACA 001360
001361 TGTGGTGTTT GATTTTCTGT TCCTGTGTTA GTTTGCTGAG AATGATGGCT TCCAGCTTCA TCCATGTCCC TGCAAAGGAC 001440
001441 ACGAACTCAT TCTTTTTTAT GGCTTCATAA TATTCCATGA GTCTGGATTT GGTTACAGAT AGAGCTGGAC AAGCCTTAGC 001520
001521 TATATCTAAT GGCTTTTGAC ATGTTATATC AATTTCTTAC TGCTTTTGTA AATGAATATA TTAAGAAGAA AAAATTACAA 001600
001601 ATGACCCTTT CTTCACAAAC TTTTAGGGTA ATCAAGTTCA GTTATTAAAA AATGGATGTT TGCAACATTC ATAGTAATTA 001680
001681 TTTTCAGAAA ATTAAAAATG ATTAAAAATT ATATTTTCAT CCCATTCAGA TATTATATAT TTAACTGTGA GATAATTCTC 001760
001761 AGAGATAAAT GTCAACTTTT AAAAAATGCT AAATAAATTA AATCAAAATA TCCCCTCTAA AATAAATAAA TTAGCTCCGA 001840
001841 TTATTTCTTC TTTTTAAATT TTTCCTTATA GTTGTAAAAA TAAAGTGAAC GTTTTGGCTC ATTTCCTCAT TAAAGTTTGA 001920
001921 ATTTTCCAGT CA
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