Difference between revisions of "ENST00000547786.1"
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sequence = <dnaseq>GTCGCTGGTCCCCGGCAACACGGCTCAGGCAAACGTAAGCGGCTTGTCGCAGAAACCAAGGGGTCCACGAAACGCGCTAGGCTAGAAGGCGGGAAGGAGAGATTACTGACAGCCGTGCCAGCCAATAAAATAGAAATCAACAGTGAGAGCTCAGAAATTCCCAGACTGTTTTGATGATAAGGTCCAAGAACTTGCCATGTGATCCATCACTACTAGACTCCCACAACTGCATTAGATTTGTTCAGGATTTTCATATAATTTTCATAACTGGCTAAGTTCTGAAATAACCCATCTTGAAGACATAAACAATGTGCATTGATGGCTAGCCAGACTCTGTCCTGCCACAGTTCTCCTCCTACTCTTCATTTCTTACCCCAAGGAGTAGTAAACATGAATCCTGACCCACCAATGCAGTCCCAGAACTGAGAAAAGATTCACTGCAGCTAAACAGATTATTTTTGCACCTTTGGAAAGCAACTGAAAAAGGAAGCCTGGAAAAAATCCTGCCTAACAAAGCAGCAGTACTCAAATAGCTTTAACTATAAGAAAGAACTGATTCAAGATATGAGAAGAGATTTAAGATATAAGATTAAATATAAGTGTAAATGATATCCTCATTTTTATTGAAATGCTGTGTATTCCTATTATTTCAGTGAAATGTTAAATGGCAAAGGATGCATTTTTTAGATTATTTTTTTCACTGAATTTTAAACAGTCTTTGAAGCAGATATTTCATATAACAATATCCAGAAACAATAACACATATGTGGATAAAGTTGAGTGGTTGGATAATGTATTGTGCAAATTATCAAGAAGAA</dnaseq>| | sequence = <dnaseq>GTCGCTGGTCCCCGGCAACACGGCTCAGGCAAACGTAAGCGGCTTGTCGCAGAAACCAAGGGGTCCACGAAACGCGCTAGGCTAGAAGGCGGGAAGGAGAGATTACTGACAGCCGTGCCAGCCAATAAAATAGAAATCAACAGTGAGAGCTCAGAAATTCCCAGACTGTTTTGATGATAAGGTCCAAGAACTTGCCATGTGATCCATCACTACTAGACTCCCACAACTGCATTAGATTTGTTCAGGATTTTCATATAATTTTCATAACTGGCTAAGTTCTGAAATAACCCATCTTGAAGACATAAACAATGTGCATTGATGGCTAGCCAGACTCTGTCCTGCCACAGTTCTCCTCCTACTCTTCATTTCTTACCCCAAGGAGTAGTAAACATGAATCCTGACCCACCAATGCAGTCCCAGAACTGAGAAAAGATTCACTGCAGCTAAACAGATTATTTTTGCACCTTTGGAAAGCAACTGAAAAAGGAAGCCTGGAAAAAATCCTGCCTAACAAAGCAGCAGTACTCAAATAGCTTTAACTATAAGAAAGAACTGATTCAAGATATGAGAAGAGATTTAAGATATAAGATTAAATATAAGTGTAAATGATATCCTCATTTTTATTGAAATGCTGTGTATTCCTATTATTTCAGTGAAATGTTAAATGGCAAAGGATGCATTTTTTAGATTATTTTTTTCACTGAATTTTAAACAGTCTTTGAAGCAGATATTTCATATAACAATATCCAGAAACAATAACACATATGTGGATAAAGTTGAGTGGTTGGATAATGTATTGTGCAAATTATCAAGAAGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-FOXG1-6]][[Category:NONHSAG014575]] | + | [[Category:Intergenic]][[Category:lnc-FOXG1-6]][[Category:NONHSAG014575]][[Category:ENSG00000257842.1]][[Category:Transcripts]] |
Latest revision as of 17:28, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000547786.1 |
| Source |
Gencode19 |
| Same with |
lnc-FOXG1-6:3,NONHSAT036098 |
| Classification |
intergenic |
| Length |
818 nt |
| Genomic location |
chr14+:27067618..27133613 |
| Exon number |
4 |
| Exons |
27067618..27067754,27106401..27106539,27132819..27132992,27133246..27133613 |
| Genome context |
|
| Sequence |
000001 GTCGCTGGTC CCCGGCAACA CGGCTCAGGC AAACGTAAGC GGCTTGTCGC AGAAACCAAG GGGTCCACGA AACGCGCTAG 000080
000081 GCTAGAAGGC GGGAAGGAGA GATTACTGAC AGCCGTGCCA GCCAATAAAA TAGAAATCAA CAGTGAGAGC TCAGAAATTC 000160 000161 CCAGACTGTT TTGATGATAA GGTCCAAGAA CTTGCCATGT GATCCATCAC TACTAGACTC CCACAACTGC ATTAGATTTG 000240 000241 TTCAGGATTT TCATATAATT TTCATAACTG GCTAAGTTCT GAAATAACCC ATCTTGAAGA CATAAACAAT GTGCATTGAT 000320 000321 GGCTAGCCAG ACTCTGTCCT GCCACAGTTC TCCTCCTACT CTTCATTTCT TACCCCAAGG AGTAGTAAAC ATGAATCCTG 000400 000401 ACCCACCAAT GCAGTCCCAG AACTGAGAAA AGATTCACTG CAGCTAAACA GATTATTTTT GCACCTTTGG AAAGCAACTG 000480 000481 AAAAAGGAAG CCTGGAAAAA ATCCTGCCTA ACAAAGCAGC AGTACTCAAA TAGCTTTAAC TATAAGAAAG AACTGATTCA 000560 000561 AGATATGAGA AGAGATTTAA GATATAAGAT TAAATATAAG TGTAAATGAT ATCCTCATTT TTATTGAAAT GCTGTGTATT 000640 000641 CCTATTATTT CAGTGAAATG TTAAATGGCA AAGGATGCAT TTTTTAGATT ATTTTTTTCA CTGAATTTTA AACAGTCTTT 000720 000721 GAAGCAGATA TTTCATATAA CAATATCCAG AAACAATAAC ACATATGTGG ATAAAGTTGA GTGGTTGGAT AATGTATTGT 000800 000801 GCAAATTATC AAGAAGAA |
Predicted Small Protein
| Name | ENST00000547786.1_smProtein_173:274 |
| Length | 34 |
| Molecular weight | 3831.4467 |
| Aromaticity | 0.0909090909091 |
| Instability index | 64.6696969697 |
| Isoelectric point | 6.68572998047 |
| Runs | 5 |
| Runs residual | 0.0326086956522 |
| Runs probability | 0.0352057940294 |
| Amino acid sequence | MIRSKNLPCDPSLLDSHNCIRFVQDFHIIFITG |
| Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHLLEEEEELL |
| PRMN | - |
| PiMo | - |
