Difference between revisions of "ENST00000559902.1"
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sequence = <dnaseq>GTCACATCTCCCAAGAAGCAGTAATGTTCCAGCAATAAGAAAAGGACAGTTTTTTGTCTTTTGCATGGTGAGCCTTATATGAATTACATCAATTTTGTCACCAATATCCATCATCAGAACATTTTGATTCTACATAACACATTGCAAATGGTCACAACAATCAAGACTATATCCATAGATGTCCCAGAAATAATATCTGACTATACAGAGCAGCATTACCAAGCCACCAAGAAGTCTGCCTAGTAATGACAATGATAACAACAGCTAACACTTAGGATTTGATTTAGGACAAATTGTTATTTGGATGGATGCTTGTCTATTGAGAGAGTAATTGTTAAACTAAAGGAAACTGGTCACAAATACTTTAGCAGTGGCTATAAATGACCAGTGGGCCAAGGATTTTGAGATCGTGAGAGACTTCTCCGGGAATGTTGTCATTCATTTCACTCCAGTGTGGCTCTTTTCCTCCATCTGCGCTCACTTTTCTAGGAGAACTATGGCCACTATGGAGAATATGAAAACATTGCTGAAGGAGGTGAAAGCCATTTCAGAAGAAGAGTTATATATTAGCTTTTGGCAGTGACAGCGTTATGGGCACGGACATTCAGCCTTTCCAGTTGACTGCTTTGAAGGGGCAATGTTCACGTGGAAGTATACCTCCTAGTATGTTTGCTAAAATAAAATCAGCTTCATTACCTAATAACATAAATGACTTTGGGAGAA</dnaseq>| | sequence = <dnaseq>GTCACATCTCCCAAGAAGCAGTAATGTTCCAGCAATAAGAAAAGGACAGTTTTTTGTCTTTTGCATGGTGAGCCTTATATGAATTACATCAATTTTGTCACCAATATCCATCATCAGAACATTTTGATTCTACATAACACATTGCAAATGGTCACAACAATCAAGACTATATCCATAGATGTCCCAGAAATAATATCTGACTATACAGAGCAGCATTACCAAGCCACCAAGAAGTCTGCCTAGTAATGACAATGATAACAACAGCTAACACTTAGGATTTGATTTAGGACAAATTGTTATTTGGATGGATGCTTGTCTATTGAGAGAGTAATTGTTAAACTAAAGGAAACTGGTCACAAATACTTTAGCAGTGGCTATAAATGACCAGTGGGCCAAGGATTTTGAGATCGTGAGAGACTTCTCCGGGAATGTTGTCATTCATTTCACTCCAGTGTGGCTCTTTTCCTCCATCTGCGCTCACTTTTCTAGGAGAACTATGGCCACTATGGAGAATATGAAAACATTGCTGAAGGAGGTGAAAGCCATTTCAGAAGAAGAGTTATATATTAGCTTTTGGCAGTGACAGCGTTATGGGCACGGACATTCAGCCTTTCCAGTTGACTGCTTTGAAGGGGCAATGTTCACGTGGAAGTATACCTCCTAGTATGTTTGCTAAAATAAAATCAGCTTCATTACCTAATAACATAAATGACTTTGGGAGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:lnc-FOXB1-3]][[Category:NONHSAG017074]] | + | [[Category:Antisense]][[Category:lnc-FOXB1-3]][[Category:NONHSAG017074]][[Category:ENSG00000245534.2]][[Category:Transcripts]] |
Latest revision as of 17:44, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000559902.1 |
| Source |
Gencode19 |
| Same with |
lnc-FOXB1-3:6,NONHSAT044220 |
| Classification |
antisense |
| Length |
723 nt |
| Genomic location |
chr15+:60802607..60840163 |
| Exon number |
4 |
| Exons |
60802607..60802732,60820779..60820926,60838464..60838665,60839917..60840163 |
| Genome context |
|
| Sequence |
000001 GTCACATCTC CCAAGAAGCA GTAATGTTCC AGCAATAAGA AAAGGACAGT TTTTTGTCTT TTGCATGGTG AGCCTTATAT 000080
000081 GAATTACATC AATTTTGTCA CCAATATCCA TCATCAGAAC ATTTTGATTC TACATAACAC ATTGCAAATG GTCACAACAA 000160 000161 TCAAGACTAT ATCCATAGAT GTCCCAGAAA TAATATCTGA CTATACAGAG CAGCATTACC AAGCCACCAA GAAGTCTGCC 000240 000241 TAGTAATGAC AATGATAACA ACAGCTAACA CTTAGGATTT GATTTAGGAC AAATTGTTAT TTGGATGGAT GCTTGTCTAT 000320 000321 TGAGAGAGTA ATTGTTAAAC TAAAGGAAAC TGGTCACAAA TACTTTAGCA GTGGCTATAA ATGACCAGTG GGCCAAGGAT 000400 000401 TTTGAGATCG TGAGAGACTT CTCCGGGAAT GTTGTCATTC ATTTCACTCC AGTGTGGCTC TTTTCCTCCA TCTGCGCTCA 000480 000481 CTTTTCTAGG AGAACTATGG CCACTATGGA GAATATGAAA ACATTGCTGA AGGAGGTGAA AGCCATTTCA GAAGAAGAGT 000560 000561 TATATATTAG CTTTTGGCAG TGACAGCGTT ATGGGCACGG ACATTCAGCC TTTCCAGTTG ACTGCTTTGA AGGGGCAATG 000640 000641 TTCACGTGGA AGTATACCTC CTAGTATGTT TGCTAAAATA AAATCAGCTT CATTACCTAA TAACATAAAT GACTTTGGGA 000720 000721 GAA |
Predicted Small Protein
| Name | ENST00000559902.1_smProtein_428:517 |
| Length | 30 |
| Molecular weight | 3310.9243 |
| Aromaticity | 0.172413793103 |
| Instability index | 56.2068965517 |
| Isoelectric point | 5.75079345703 |
| Runs | 5 |
| Runs residual | 0.0271551724138 |
| Runs probability | 0.0435435435435 |
| Amino acid sequence | MLSFISLQCGSFPPSALTFLGELWPLWRI |
| Secondary structure | LLEEEELLLLLLLHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
