Difference between revisions of "ENST00000586673.1"
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sequence = <dnaseq>TCAATTCACTCGACAACAAGAGAAACAAATGGAGATTCCTACACAAAGACTTTCAAGCACAAAGAAATCCTGCTGCCTGTAAAGCGGAGCTGCCTCAGCCCTTGATGAACGACAGAAAATACCACCTACTGCCAGACCTCAACGCCTCACAAAACTCTCACCCACCTACTGCTTTTAGCTCACATTCCAGGAATTCAGATGAAGTGAAGTGCTCTCATGGGGACCAGGCATGGTTATGCCAGTCCACTGCCCTGCAAGCCTCAAGGGAAGCCAACTGCCCTTCAGCAAGTCACACCTGCCTTGGTGGAGGCCTTGATTGGAAGTGCCACACGCTACATGTCCAGTCCTGAGCGGGAGAATCGGTGTAGGGACGTTCTGGGGATGCCAGCTGTGGCCAGATCAGGTCCAACTACAGAAGAATAATGAAGACTCCACCTGAGGGCTGGAAAAACAAAACCTCAAGTGTGAGGCAGCCAACCTGTTACCTCGAGGGACTGTTCCGCAGCACAGCGGGGCCATGGGAACAGCAGCAGACACCCCGACCTCCTCGCTACCTGTGTGTGTATTAACACGCCGGCCTCCTCGCTACCTATCAACTATGGCCTGA</dnaseq>| | sequence = <dnaseq>TCAATTCACTCGACAACAAGAGAAACAAATGGAGATTCCTACACAAAGACTTTCAAGCACAAAGAAATCCTGCTGCCTGTAAAGCGGAGCTGCCTCAGCCCTTGATGAACGACAGAAAATACCACCTACTGCCAGACCTCAACGCCTCACAAAACTCTCACCCACCTACTGCTTTTAGCTCACATTCCAGGAATTCAGATGAAGTGAAGTGCTCTCATGGGGACCAGGCATGGTTATGCCAGTCCACTGCCCTGCAAGCCTCAAGGGAAGCCAACTGCCCTTCAGCAAGTCACACCTGCCTTGGTGGAGGCCTTGATTGGAAGTGCCACACGCTACATGTCCAGTCCTGAGCGGGAGAATCGGTGTAGGGACGTTCTGGGGATGCCAGCTGTGGCCAGATCAGGTCCAACTACAGAAGAATAATGAAGACTCCACCTGAGGGCTGGAAAAACAAAACCTCAAGTGTGAGGCAGCCAACCTGTTACCTCGAGGGACTGTTCCGCAGCACAGCGGGGCCATGGGAACAGCAGCAGACACCCCGACCTCCTCGCTACCTGTGTGTGTATTAACACGCCGGCCTCCTCGCTACCTATCAACTATGGCCTGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000235779.3]][[Category:NONHSAG026762]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:ENSG00000235779.3]][[Category:NONHSAG026762]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 18:23, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000586673.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT068525 |
| Classification |
intergenic |
| Length |
607 nt |
| Genomic location |
chr2-:306225..310334 |
| Exon number |
3 |
| Exons |
306225..306240,308937..309407,310215..310334 |
| Genome context |
|
| Sequence |
000001 TCAATTCACT CGACAACAAG AGAAACAAAT GGAGATTCCT ACACAAAGAC TTTCAAGCAC AAAGAAATCC TGCTGCCTGT 000080
000081 AAAGCGGAGC TGCCTCAGCC CTTGATGAAC GACAGAAAAT ACCACCTACT GCCAGACCTC AACGCCTCAC AAAACTCTCA 000160 000161 CCCACCTACT GCTTTTAGCT CACATTCCAG GAATTCAGAT GAAGTGAAGT GCTCTCATGG GGACCAGGCA TGGTTATGCC 000240 000241 AGTCCACTGC CCTGCAAGCC TCAAGGGAAG CCAACTGCCC TTCAGCAAGT CACACCTGCC TTGGTGGAGG CCTTGATTGG 000320 000321 AAGTGCCACA CGCTACATGT CCAGTCCTGA GCGGGAGAAT CGGTGTAGGG ACGTTCTGGG GATGCCAGCT GTGGCCAGAT 000400 000401 CAGGTCCAAC TACAGAAGAA TAATGAAGAC TCCACCTGAG GGCTGGAAAA ACAAAACCTC AAGTGTGAGG CAGCCAACCT 000480 000481 GTTACCTCGA GGGACTGTTC CGCAGCACAG CGGGGCCATG GGAACAGCAG CAGACACCCC GACCTCCTCG CTACCTGTGT 000560 000561 GTGTATTAAC ACGCCGGCCT CCTCGCTACC TATCAACTAT GGCCTGA |
Predicted Small Protein
| Name | ENST00000586673.1_smProtein_104:349 |
| Length | 82 |
| Molecular weight | 8872.643 |
| Aromaticity | 0.0493827160494 |
| Instability index | 50.7913580247 |
| Isoelectric point | 6.62518310547 |
| Runs | 9 |
| Runs residual | 0.03106859619 |
| Runs probability | 0.0297454317062 |
| Amino acid sequence | MNDRKYHLLPDLNASQNSHPPTAFSSHSRNSDEVKCSHGDQAWLCQSTALQASREANCPS ASHTCLGGGLDWKCHTLHVQS |
| Secondary structure | LLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHHHHHHHHHHHHHLLLLL LLLLLLLLLLLEEEEEEEEEL |
| PRMN | - |
| PiMo | - |
