Difference between revisions of "ENST00000587441.1"

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sequence = <dnaseq>GGAGACTCTAAGACTTCTGAAGAGTTTCTTGCTTCTTTCCTGTGGGGCAGTGACTCCACTTCCCAGCAGTAATGGAATATCCTGAATTAGCTACATTAATGTTAGAACCATTTGGACCTCACCCAGGACTTCAACTACATTATGGATGTTATAAGAAATGAGACTCACTACTGAATTCACAGCAGGCATGGTTGAAGGCACCATTCACTATAGCTTGCAGTGTTCCCTTTATGAGATTTGTATGAGAAATTCCTCTCATAGGTCAAGTTCTTGGGAGAAAATTCTCCCAAAGAGCAAGTCCCAGGAAAATCTTGGCTGAGTAACTCCTGGACGATTGGCACAGAAGAAGGCACAAGGCAAATACCCATCTCTGTACACCCTGTGCTACTGTGTCATGTGCTGCTCCAGGCAACTCCAATGGATTGGCCACCCTGGCCAATGTGCCCTCCAAACACCAGCACTGAGTAGAAAGAGGCTCTGATTCATGAAATGTGAATTTATGACAGTTGCCACTCTTAAAAAAAAAAACAAACAGACAGAACTTGAGCAATACATGACTGATGCATTCTCAGCCTGCTTCCTGTGTTCCATCTGTCTTTCTGCCAGTGCATTCACCCTCCAGGTTCTAGTATGTTACGTTTATGTTCCCCTGCTTTCTACAATCCTGTTCAAAGAGTTGCTGACTTAACCACAGAGAGGATTCCAGAACCTGAGACACAGAATAAACTTGAGCAATCATAGTCCATCCACTTCATTGTCTCATCAAAAACCAAAGGTCCAGTGAAGCTCTGGAACTCAACGCTGTAAAGGAG</dnaseq>|
 
sequence = <dnaseq>GGAGACTCTAAGACTTCTGAAGAGTTTCTTGCTTCTTTCCTGTGGGGCAGTGACTCCACTTCCCAGCAGTAATGGAATATCCTGAATTAGCTACATTAATGTTAGAACCATTTGGACCTCACCCAGGACTTCAACTACATTATGGATGTTATAAGAAATGAGACTCACTACTGAATTCACAGCAGGCATGGTTGAAGGCACCATTCACTATAGCTTGCAGTGTTCCCTTTATGAGATTTGTATGAGAAATTCCTCTCATAGGTCAAGTTCTTGGGAGAAAATTCTCCCAAAGAGCAAGTCCCAGGAAAATCTTGGCTGAGTAACTCCTGGACGATTGGCACAGAAGAAGGCACAAGGCAAATACCCATCTCTGTACACCCTGTGCTACTGTGTCATGTGCTGCTCCAGGCAACTCCAATGGATTGGCCACCCTGGCCAATGTGCCCTCCAAACACCAGCACTGAGTAGAAAGAGGCTCTGATTCATGAAATGTGAATTTATGACAGTTGCCACTCTTAAAAAAAAAAACAAACAGACAGAACTTGAGCAATACATGACTGATGCATTCTCAGCCTGCTTCCTGTGTTCCATCTGTCTTTCTGCCAGTGCATTCACCCTCCAGGTTCTAGTATGTTACGTTTATGTTCCCCTGCTTTCTACAATCCTGTTCAAAGAGTTGCTGACTTAACCACAGAGAGGATTCCAGAACCTGAGACACAGAATAAACTTGAGCAATCATAGTCCATCCACTTCATTGTCTCATCAAAAACCAAAGGTCCAGTGAAGCTCTGGAACTCAACGCTGTAAAGGAG</dnaseq>|
 
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[[Category:Intronic(AS)]][[Category:ENSG00000236581.4]]
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[[Category:Intronic(AS)]][[Category:ENSG00000236581.4]][[Category:NONHSAG013195]][[Category:Transcripts]]

Latest revision as of 18:24, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000587441.1

Source

Gencode19

Same with

NONHSAT033126

Classification

intronic(AS)

Length

812 nt

Genomic location

chr13+:33851690..33855355

Exon number

5

Exons

33851690..33851833,33852633..33852806,33853670..33853793,33854034..33854213,33855166..33855355

Genome context

Sequence
000001 GGAGACTCTA AGACTTCTGA AGAGTTTCTT GCTTCTTTCC TGTGGGGCAG TGACTCCACT TCCCAGCAGT AATGGAATAT 000080
000081 CCTGAATTAG CTACATTAAT GTTAGAACCA TTTGGACCTC ACCCAGGACT TCAACTACAT TATGGATGTT ATAAGAAATG 000160
000161 AGACTCACTA CTGAATTCAC AGCAGGCATG GTTGAAGGCA CCATTCACTA TAGCTTGCAG TGTTCCCTTT ATGAGATTTG 000240
000241 TATGAGAAAT TCCTCTCATA GGTCAAGTTC TTGGGAGAAA ATTCTCCCAA AGAGCAAGTC CCAGGAAAAT CTTGGCTGAG 000320
000321 TAACTCCTGG ACGATTGGCA CAGAAGAAGG CACAAGGCAA ATACCCATCT CTGTACACCC TGTGCTACTG TGTCATGTGC 000400
000401 TGCTCCAGGC AACTCCAATG GATTGGCCAC CCTGGCCAAT GTGCCCTCCA AACACCAGCA CTGAGTAGAA AGAGGCTCTG 000480
000481 ATTCATGAAA TGTGAATTTA TGACAGTTGC CACTCTTAAA AAAAAAAACA AACAGACAGA ACTTGAGCAA TACATGACTG 000560
000561 ATGCATTCTC AGCCTGCTTC CTGTGTTCCA TCTGTCTTTC TGCCAGTGCA TTCACCCTCC AGGTTCTAGT ATGTTACGTT 000640
000641 TATGTTCCCC TGCTTTCTAC AATCCTGTTC AAAGAGTTGC TGACTTAACC ACAGAGAGGA TTCCAGAACC TGAGACACAG 000720
000721 AATAAACTTG AGCAATCATA GTCCATCCAC TTCATTGTCT CATCAAAAAC CAAAGGTCCA GTGAAGCTCT GGAACTCAAC 000800
000801 GCTGTAAAGG AG
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Predicted Small Protein

Name ENST00000587441.1_smProtein_71:160
Length 30
Molecular weight 3363.9225
Aromaticity 0.137931034483
Instability index 55.6586206897
Isoelectric point 5.98065185547
Runs 5
Runs residual 0.0271551724138
Runs probability 0.0182653241477
Amino acid sequence MEYPELATLMLEPFGPHPGLQLHYGCYKK
Secondary structure LLLHHHHHHHHLLLLLLLLLLLLLLEELL
PRMN -
PiMo -