Difference between revisions of "ENST00000589024.1"

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sequence = <dnaseq>TTCACAAAGACGTTATTGGTGATTCAATCTTGAGTCATGAAAAGTCAACCTTGAGCCACAAAAAGTCAACCTTGAGCCAAGCAGATTGGAGAGTCATACATGCCATTCCTGGGACCATCAAAAATGGCAGAGGTCACACAAAAAGGCAAAACTTTTAAGAGGTGTTTTAAACGTCGTATGGGCCAAAGAGAAGCTGGATTTCCTATTGGAGTCACCTGTAACACACGTGTGACGAAATTGGCCTGTGAGGACAAGGCAGTGAGCAGAGAGGACAGCAGTCCTTATGAGATCAAGCTCTAAGGTGAGGTTGCAGGATCTGAAGGCCAGCTCCCCTGCTTGCTCACTGTATGACTTTAGGTATCCTAGACACATTTGGAGAATTCACCTGAGCTACAGGATGTGGTAAGATTTGGTGAGCAGGTGGTGATTCTTACAGAATCCCTCACACATTCATGCACAGAACTTCCCCAGCACACTCCCAGGTAGGACCACTTCCCTCTTCATTGTGCAAAGATTCACCACTGGTTCCAGCCTTCTCTGGCACTTTTAAGATATGCATCAGGTTTTATTCATCTCTGATTTTCTAGCCTCTGGCAGACTACCTGGTGTACCAGAGGCTTTGTAAGTAATAGTTAAATAAAGAGAAAACATTAAAGCAACATTGAAGGAAGAGGGTTAACCAGACTACAGATTTGAGACCTCTATCTCAGAGGGCCAACAGTCATGTTGATGTTTTCATGCTTTCTTGGATATAAAAGTCACACTACACTTTCCCTCTCGGTGACCATGTACAAAGGTTCATTTATAATTAATAGACAAAGTCTTTAATAAAGCAAACC</dnaseq>|
 
sequence = <dnaseq>TTCACAAAGACGTTATTGGTGATTCAATCTTGAGTCATGAAAAGTCAACCTTGAGCCACAAAAAGTCAACCTTGAGCCAAGCAGATTGGAGAGTCATACATGCCATTCCTGGGACCATCAAAAATGGCAGAGGTCACACAAAAAGGCAAAACTTTTAAGAGGTGTTTTAAACGTCGTATGGGCCAAAGAGAAGCTGGATTTCCTATTGGAGTCACCTGTAACACACGTGTGACGAAATTGGCCTGTGAGGACAAGGCAGTGAGCAGAGAGGACAGCAGTCCTTATGAGATCAAGCTCTAAGGTGAGGTTGCAGGATCTGAAGGCCAGCTCCCCTGCTTGCTCACTGTATGACTTTAGGTATCCTAGACACATTTGGAGAATTCACCTGAGCTACAGGATGTGGTAAGATTTGGTGAGCAGGTGGTGATTCTTACAGAATCCCTCACACATTCATGCACAGAACTTCCCCAGCACACTCCCAGGTAGGACCACTTCCCTCTTCATTGTGCAAAGATTCACCACTGGTTCCAGCCTTCTCTGGCACTTTTAAGATATGCATCAGGTTTTATTCATCTCTGATTTTCTAGCCTCTGGCAGACTACCTGGTGTACCAGAGGCTTTGTAAGTAATAGTTAAATAAAGAGAAAACATTAAAGCAACATTGAAGGAAGAGGGTTAACCAGACTACAGATTTGAGACCTCTATCTCAGAGGGCCAACAGTCATGTTGATGTTTTCATGCTTTCTTGGATATAAAAGTCACACTACACTTTCCCTCTCGGTGACCATGTACAAAGGTTCATTTATAATTAATAGACAAAGTCTTTAATAAAGCAAACC</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:ENSG00000236172.2]][[Category:NONHSAG026899]][[Category:Transcripts]]

Latest revision as of 18:27, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000589024.1

Source

Gencode19

Same with

NONHSAT068868

Classification

intergenic

Length

839 nt

Genomic location

chr2-:6772393..6774101

Exon number

2

Exons

6772393..6772874,6773745..6774101

Genome context

Sequence
000001 TTCACAAAGA CGTTATTGGT GATTCAATCT TGAGTCATGA AAAGTCAACC TTGAGCCACA AAAAGTCAAC CTTGAGCCAA 000080
000081 GCAGATTGGA GAGTCATACA TGCCATTCCT GGGACCATCA AAAATGGCAG AGGTCACACA AAAAGGCAAA ACTTTTAAGA 000160
000161 GGTGTTTTAA ACGTCGTATG GGCCAAAGAG AAGCTGGATT TCCTATTGGA GTCACCTGTA ACACACGTGT GACGAAATTG 000240
000241 GCCTGTGAGG ACAAGGCAGT GAGCAGAGAG GACAGCAGTC CTTATGAGAT CAAGCTCTAA GGTGAGGTTG CAGGATCTGA 000320
000321 AGGCCAGCTC CCCTGCTTGC TCACTGTATG ACTTTAGGTA TCCTAGACAC ATTTGGAGAA TTCACCTGAG CTACAGGATG 000400
000401 TGGTAAGATT TGGTGAGCAG GTGGTGATTC TTACAGAATC CCTCACACAT TCATGCACAG AACTTCCCCA GCACACTCCC 000480
000481 AGGTAGGACC ACTTCCCTCT TCATTGTGCA AAGATTCACC ACTGGTTCCA GCCTTCTCTG GCACTTTTAA GATATGCATC 000560
000561 AGGTTTTATT CATCTCTGAT TTTCTAGCCT CTGGCAGACT ACCTGGTGTA CCAGAGGCTT TGTAAGTAAT AGTTAAATAA 000640
000641 AGAGAAAACA TTAAAGCAAC ATTGAAGGAA GAGGGTTAAC CAGACTACAG ATTTGAGACC TCTATCTCAG AGGGCCAACA 000720
000721 GTCATGTTGA TGTTTTCATG CTTTCTTGGA TATAAAAGTC ACACTACACT TTCCCTCTCG GTGACCATGT ACAAAGGTTC 000800
000801 ATTTATAATT AATAGACAAA GTCTTTAATA AAGCAAACC
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Predicted Small Protein

Name ENST00000589024.1_smProtein_452:586
Length 45
Molecular weight 4824.6025
Aromaticity 0.113636363636
Instability index 79.5252272727
Isoelectric point 9.38397216797
Runs 4
Runs residual 0.072192513369
Runs probability 0.0427265500796
Amino acid sequence MHRTSPAHSQVGPLPSSLCKDSPLVPAFSGTFKICIRFYSSLIF
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
PiMo i???????????????????????????????????????????