Difference between revisions of "ENST00000592553.1"
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sequence = <dnaseq>AACAAGAAAATAGACTCTACTTAGAAATGAAACTCAACTAAAGGTAAAAGTTGTCAGGAACATCTCCAAGAAAGCCAGAGTCAGCCTCTAAACTTTGCATCAAGAACGCAATGGCTTCCCTGAGGGCCCAGGGACGCGTGGCAGCTGTGAGGCAGCCCCTTCTCTGCTGTCGAGGAACTGGACACTTCTCCTGTCCCTTCCCACAAGGTGGGTATAATATTAGGCAGAAACCCAATATAAAAAGAAAAGCAGAGTTGTTGTAGATTCATCGAGGGTTGGCGACCTGGTTCCAATGAGCCATCTCCCTGTTCCGACAGGGGCTTCCTGGAGCTCCTGCAACCCCAGGCATTAGTTCCGGTGCAGTTCTAGGATCAGATCAATTCACTCGACAACAAGAGAAACAAATGGAGATTCCTACACAAAGACTTTCAAGCACAAAGAAATCCTGCTGCCTGTAAAGCGGAGCTGCCTCAGCCCTTGATGAACGACAGAAAATCTCACATTCCAGGAATTCAGATGAAGTGAAGTGCTCTCATGGGGACCAGGCATGGTTATGCCAGTCCACTGCCCTGCAAGCCTCAAGGGAAGCCAACTGCCCTTCAGCAAGTCACACCTGCCTTGGTGGAGGCCTTGATTGGAAGTGCCACACGCTACATGTCCAGTCCTGAGCGGGAGAATCGGTGTAGGGACGTTCTGGGGATGCCAGCTGTGGCCAGATCAGGTCCAACTACAGAAGAATAATGAAGACTCCACCTGAGGGCTGGAAAAACAAAACCTCAAGTGTGAGGCAGCCAACCTGTTACCTCGAGGGACTGTTCCGCAGCACAGCGGGGCCATGGGAACAGCAGCAGACACCCCGACCTCCTCGCTACCTGTGTGTGTATTAACACGCCGGCCTCCTCGCTACCTATCAACTATGGCCTGA</dnaseq>| | sequence = <dnaseq>AACAAGAAAATAGACTCTACTTAGAAATGAAACTCAACTAAAGGTAAAAGTTGTCAGGAACATCTCCAAGAAAGCCAGAGTCAGCCTCTAAACTTTGCATCAAGAACGCAATGGCTTCCCTGAGGGCCCAGGGACGCGTGGCAGCTGTGAGGCAGCCCCTTCTCTGCTGTCGAGGAACTGGACACTTCTCCTGTCCCTTCCCACAAGGTGGGTATAATATTAGGCAGAAACCCAATATAAAAAGAAAAGCAGAGTTGTTGTAGATTCATCGAGGGTTGGCGACCTGGTTCCAATGAGCCATCTCCCTGTTCCGACAGGGGCTTCCTGGAGCTCCTGCAACCCCAGGCATTAGTTCCGGTGCAGTTCTAGGATCAGATCAATTCACTCGACAACAAGAGAAACAAATGGAGATTCCTACACAAAGACTTTCAAGCACAAAGAAATCCTGCTGCCTGTAAAGCGGAGCTGCCTCAGCCCTTGATGAACGACAGAAAATCTCACATTCCAGGAATTCAGATGAAGTGAAGTGCTCTCATGGGGACCAGGCATGGTTATGCCAGTCCACTGCCCTGCAAGCCTCAAGGGAAGCCAACTGCCCTTCAGCAAGTCACACCTGCCTTGGTGGAGGCCTTGATTGGAAGTGCCACACGCTACATGTCCAGTCCTGAGCGGGAGAATCGGTGTAGGGACGTTCTGGGGATGCCAGCTGTGGCCAGATCAGGTCCAACTACAGAAGAATAATGAAGACTCCACCTGAGGGCTGGAAAAACAAAACCTCAAGTGTGAGGCAGCCAACCTGTTACCTCGAGGGACTGTTCCGCAGCACAGCGGGGCCATGGGAACAGCAGCAGACACCCCGACCTCCTCGCTACCTGTGTGTGTATTAACACGCCGGCCTCCTCGCTACCTATCAACTATGGCCTGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000235779.3]][[Category:NONHSAG026762]] | + | [[Category:Intergenic]][[Category:ENSG00000235779.3]][[Category:NONHSAG026762]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 18:34, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000592553.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT068523 |
| Classification |
intergenic |
| Length |
925 nt |
| Genomic location |
chr2-:306225..313163 |
| Exon number |
4 |
| Exons |
306225..306240,308937..309349,310215..310499,312953..313163 |
| Genome context |
|
| Sequence |
000001 AACAAGAAAA TAGACTCTAC TTAGAAATGA AACTCAACTA AAGGTAAAAG TTGTCAGGAA CATCTCCAAG AAAGCCAGAG 000080
000081 TCAGCCTCTA AACTTTGCAT CAAGAACGCA ATGGCTTCCC TGAGGGCCCA GGGACGCGTG GCAGCTGTGA GGCAGCCCCT 000160 000161 TCTCTGCTGT CGAGGAACTG GACACTTCTC CTGTCCCTTC CCACAAGGTG GGTATAATAT TAGGCAGAAA CCCAATATAA 000240 000241 AAAGAAAAGC AGAGTTGTTG TAGATTCATC GAGGGTTGGC GACCTGGTTC CAATGAGCCA TCTCCCTGTT CCGACAGGGG 000320 000321 CTTCCTGGAG CTCCTGCAAC CCCAGGCATT AGTTCCGGTG CAGTTCTAGG ATCAGATCAA TTCACTCGAC AACAAGAGAA 000400 000401 ACAAATGGAG ATTCCTACAC AAAGACTTTC AAGCACAAAG AAATCCTGCT GCCTGTAAAG CGGAGCTGCC TCAGCCCTTG 000480 000481 ATGAACGACA GAAAATCTCA CATTCCAGGA ATTCAGATGA AGTGAAGTGC TCTCATGGGG ACCAGGCATG GTTATGCCAG 000560 000561 TCCACTGCCC TGCAAGCCTC AAGGGAAGCC AACTGCCCTT CAGCAAGTCA CACCTGCCTT GGTGGAGGCC TTGATTGGAA 000640 000641 GTGCCACACG CTACATGTCC AGTCCTGAGC GGGAGAATCG GTGTAGGGAC GTTCTGGGGA TGCCAGCTGT GGCCAGATCA 000720 000721 GGTCCAACTA CAGAAGAATA ATGAAGACTC CACCTGAGGG CTGGAAAAAC AAAACCTCAA GTGTGAGGCA GCCAACCTGT 000800 000801 TACCTCGAGG GACTGTTCCG CAGCACAGCG GGGCCATGGG AACAGCAGCA GACACCCCGA CCTCCTCGCT ACCTGTGTGT 000880 000881 GTATTAACAC GCCGGCCTCC TCGCTACCTA TCAACTATGG CCTGA |
Predicted Small Protein
| Name | ENST00000592553.1_smProtein_110:262 |
| Length | 51 |
| Molecular weight | 5539.4977 |
| Aromaticity | 0.06 |
| Instability index | 64.096 |
| Isoelectric point | 10.9221801758 |
| Runs | 9 |
| Runs residual | 0.0153216374269 |
| Runs probability | 0.0254175744372 |
| Amino acid sequence | MASLRAQGRVAAVRQPLLCCRGTGHFSCPFPQGGYNIRQKPNIKRKAELL |
| Secondary structure | LLLHHHLLEELLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHLL |
| PRMN | - |
| PiMo | - |
