Difference between revisions of "ENST00000596573.1"

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sequence = <dnaseq>GGGGCGGCGAGGCGAGGCCTGCGGAGCGGAGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGGTTGGTTGAGGGGTTTAACAAGGCTAAGAAGAGACGGAGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTCACCTCAAGCGATCCTCCCGTCTTGGCCTCCCAAGTGTCAGGATTACGGGCATGTGCTATCACACCCAACCTGATACATTGCCTTTATAAATTTTTTTTTCTTTATTCTAAAAACCAGAAAAAACAAAACTGGATACATGTGCAGAACATGCAGGTGAGACGTGGTCTTGTAACACAGTGGTTAAGAATGTGACTTTGGAGCCAGCCTGCTAGGGGCTGAATTCTGACTCAGCCATTTACTAACTGTGTGACCTTAGGTAAGTCATTTACCTTCTTTGTCCCTCAGTTTCATCTCGGTTAAGTAGGGATAATGATAGCACCTATTTTATAGGGTTATTGTGAGGAATAAATCCAAGTAAAATGCTTAGAATAGTAACTGAAACATAGCACTCATTAGGAATGCTTTAATTTTCATTTATTTGAGTATTAAAGGTTGAATTTTC</dnaseq>|
 
sequence = <dnaseq>GGGGCGGCGAGGCGAGGCCTGCGGAGCGGAGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGGTTGGTTGAGGGGTTTAACAAGGCTAAGAAGAGACGGAGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTCACCTCAAGCGATCCTCCCGTCTTGGCCTCCCAAGTGTCAGGATTACGGGCATGTGCTATCACACCCAACCTGATACATTGCCTTTATAAATTTTTTTTTCTTTATTCTAAAAACCAGAAAAAACAAAACTGGATACATGTGCAGAACATGCAGGTGAGACGTGGTCTTGTAACACAGTGGTTAAGAATGTGACTTTGGAGCCAGCCTGCTAGGGGCTGAATTCTGACTCAGCCATTTACTAACTGTGTGACCTTAGGTAAGTCATTTACCTTCTTTGTCCCTCAGTTTCATCTCGGTTAAGTAGGGATAATGATAGCACCTATTTTATAGGGTTATTGTGAGGAATAAATCCAAGTAAAATGCTTAGAATAGTAACTGAAACATAGCACTCATTAGGAATGCTTTAATTTTCATTTATTTGAGTATTAAAGGTTGAATTTTC</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:ENSG00000179818.9]][[Category:NONHSAG028093]]
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[[Category:Intergenic]][[Category:ENSG00000179818.9]][[Category:NONHSAG028093]][[Category:Transcripts]]

Latest revision as of 18:41, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000596573.1

Source

Gencode19

Same with

NONHSAT071440

Classification

intergenic

Length

774 nt

Genomic location

chr2-:70278149..70314138

Exon number

5

Exons

70278149..70278437,70282846..70283042,70310639..70310819,70312679..70312756,70314110..70314138

Genome context

Sequence
000001 GGGGCGGCGA GGCGAGGCCT GCGGAGCGGA GGAAGACAAA CATAAAGATG AAGTGCTTAA TTCAAGGTCA CACAATGTCG 000080
000081 GGGATGGACC TCCAGATTTC CTTACTGACC TGCATTATCT TGTGGATACC TGAGTGAATT CCACACCACC CATTTTATAG 000160
000161 ATGAAACCAC TGAGACATGG AGCAATTGAC TGAGTAGTCA CTGCCCCACC CCTGCCTGGA GCCTCACACA TGACTCGCCT 000240
000241 CCTCTCAGTG ACCACAGGTT GGTTGAGGGG TTTAACAAGG CTAAGAAGAG ACGGAGTCTT GCTATGTTGC CCAGGCTGGT 000320
000321 CTTGAACTCC TCACCTCAAG CGATCCTCCC GTCTTGGCCT CCCAAGTGTC AGGATTACGG GCATGTGCTA TCACACCCAA 000400
000401 CCTGATACAT TGCCTTTATA AATTTTTTTT TCTTTATTCT AAAAACCAGA AAAAACAAAA CTGGATACAT GTGCAGAACA 000480
000481 TGCAGGTGAG ACGTGGTCTT GTAACACAGT GGTTAAGAAT GTGACTTTGG AGCCAGCCTG CTAGGGGCTG AATTCTGACT 000560
000561 CAGCCATTTA CTAACTGTGT GACCTTAGGT AAGTCATTTA CCTTCTTTGT CCCTCAGTTT CATCTCGGTT AAGTAGGGAT 000640
000641 AATGATAGCA CCTATTTTAT AGGGTTATTG TGAGGAATAA ATCCAAGTAA AATGCTTAGA ATAGTAACTG AAACATAGCA 000720
000721 CTCATTAGGA ATGCTTTAAT TTTCATTTAT TTGAGTATTA AAGGTTGAAT TTTC
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Predicted Small Protein

Name ENST00000596573.1_smProtein_47:136
Length 30
Molecular weight 3289.0266
Aromaticity 0.0344827586207
Instability index 59.8965517241
Isoelectric point 5.48760986328
Runs 5
Runs residual 0.0271551724138
Runs probability 0.0212329977036
Amino acid sequence MKCLIQGHTMSGMDLQISLLTCIILWIPE
Secondary structure LEEEELLLLLLHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -