Difference between revisions of "NONHSAT001336"
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sequence = <dnaseq>gggggacttacaaaatggtgcagattggactttcttgccttctactttaatataaaaggaagaggggcgttgttgattatctggctgtttcctgtcgaattaggggcactgtaaccagggtttgggttttgaagtagtgggtgttcgactttagagttgttttcctggaagcgctgatactggacttagtggaggagaacgacggtatcaatgtgtttctggatgactgcctggacaagggagttcagcttttgggagactgactgggctatgaagtgtacctttctactctgcagaggctggaaaggcaaaaatgatggctaaggcttccttgcagCCGCTGATACAGAAGCCTGAGGGAACACACTCCCCCCTACGTCCTTCTCCAACACAGCAGAGCCAGGAAGGACCCGGATGGAAGTTAGGACAAAGAGGCCCagaattggcacagataccaacagaccattcgttgaagaagaaatccaaatggccataagCTTTAAGATTCTGGAGGCCAAGAATTTGACTCCCCCCGGATCCATGGTCTGTGGATACCAATGTTCCGACTGGAGACGGGGAGCCCGCGAGACCCGGGTCTCCAGGGTCTGCCCAAGGAAGTTGCTCATGGGAGCAGACCTCTAGAGCAGGATTTGAGGCCAGGCCAAAGAGGGAGAGAATTCGCCGAcatctatttaacatcccttaattgttgagagcatccactgtgtgccagacacttcggtacacacagaaagaaacccagaggaggAACCCCAGAGATGAAAGGCCTCCTCCCACTGGCTTGGTTCCTGGCTTGTAGTGTGCCTGCTGTGCAAGGAGGCTTGCTGGACCTAAAATCAATGATCGAGAAGGTGACAGGGAAGAACGCCCTGACAAACTACGGCTTCTACGGCTGTTACTGCGGCTGGGGCGGCCGAGGAACCCCCAAGGATGGCACCGATTG</dnaseq>| | sequence = <dnaseq>gggggacttacaaaatggtgcagattggactttcttgccttctactttaatataaaaggaagaggggcgttgttgattatctggctgtttcctgtcgaattaggggcactgtaaccagggtttgggttttgaagtagtgggtgttcgactttagagttgttttcctggaagcgctgatactggacttagtggaggagaacgacggtatcaatgtgtttctggatgactgcctggacaagggagttcagcttttgggagactgactgggctatgaagtgtacctttctactctgcagaggctggaaaggcaaaaatgatggctaaggcttccttgcagCCGCTGATACAGAAGCCTGAGGGAACACACTCCCCCCTACGTCCTTCTCCAACACAGCAGAGCCAGGAAGGACCCGGATGGAAGTTAGGACAAAGAGGCCCagaattggcacagataccaacagaccattcgttgaagaagaaatccaaatggccataagCTTTAAGATTCTGGAGGCCAAGAATTTGACTCCCCCCGGATCCATGGTCTGTGGATACCAATGTTCCGACTGGAGACGGGGAGCCCGCGAGACCCGGGTCTCCAGGGTCTGCCCAAGGAAGTTGCTCATGGGAGCAGACCTCTAGAGCAGGATTTGAGGCCAGGCCAAAGAGGGAGAGAATTCGCCGAcatctatttaacatcccttaattgttgagagcatccactgtgtgccagacacttcggtacacacagaaagaaacccagaggaggAACCCCAGAGATGAAAGGCCTCCTCCCACTGGCTTGGTTCCTGGCTTGTAGTGTGCCTGCTGTGCAAGGAGGCTTGCTGGACCTAAAATCAATGATCGAGAAGGTGACAGGGAAGAACGCCCTGACAAACTACGGCTTCTACGGCTGTTACTGCGGCTGGGGCGGCCGAGGAACCCCCAAGGATGGCACCGATTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG000559]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG000559]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:17, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001336 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
964 nt |
Genomic location |
chr1+:20354927..20412720 |
Exon number |
7 |
Exons |
20354927..20355202,20386125..20386185,20395366..20395525,20396787..20396958,20397338..20397437,20411314..20411363,20412576..20412720 |
Genome context |
|
Sequence |
000001 gggggactta caaaatggtg cagattggac tttcttgcct tctactttaa tataaaagga agaggggcgt tgttgattat 000080
000081 ctggctgttt cctgtcgaat taggggcact gtaaccaggg tttgggtttt gaagtagtgg gtgttcgact ttagagttgt 000160 000161 tttcctggaa gcgctgatac tggacttagt ggaggagaac gacggtatca atgtgtttct ggatgactgc ctggacaagg 000240 000241 gagttcagct tttgggagac tgactgggct atgaagtgta cctttctact ctgcagaggc tggaaaggca aaaatgatgg 000320 000321 ctaaggcttc cttgcagCCG CTGATACAGA AGCCTGAGGG AACACACTCC CCCCTACGTC CTTCTCCAAC ACAGCAGAGC 000400 000401 CAGGAAGGAC CCGGATGGAA GTTAGGACAA AGAGGCCCag aattggcaca gataccaaca gaccattcgt tgaagaagaa 000480 000481 atccaaatgg ccataagCTT TAAGATTCTG GAGGCCAAGA ATTTGACTCC CCCCGGATCC ATGGTCTGTG GATACCAATG 000560 000561 TTCCGACTGG AGACGGGGAG CCCGCGAGAC CCGGGTCTCC AGGGTCTGCC CAAGGAAGTT GCTCATGGGA GCAGACCTCT 000640 000641 AGAGCAGGAT TTGAGGCCAG GCCAAAGAGG GAGAGAATTC GCCGAcatct atttaacatc ccttaattgt tgagagcatc 000720 000721 cactgtgtgc cagacacttc ggtacacaca gaaagaaacc cagaggaggA ACCCCAGAGA TGAAAGGCCT CCTCCCACTG 000800 000801 GCTTGGTTCC TGGCTTGTAG TGTGCCTGCT GTGCAAGGAG GCTTGCTGGA CCTAAAATCA ATGATCGAGA AGGTGACAGG 000880 000881 GAAGAACGCC CTGACAAACT ACGGCTTCTA CGGCTGTTAC TGCGGCTGGG GCGGCCGAGG AACCCCCAAG GATGGCACCG 000960 000961 ATTG |
Predicted Small Protein
Name | NONHSAT001336_smProtein_557:712 |
Length | 52 |
Molecular weight | 5710.3803 |
Aromaticity | 0.0588235294118 |
Instability index | 40.5117647059 |
Isoelectric point | 6.53704833984 |
Runs | 8 |
Runs residual | 0.00262085032033 |
Runs probability | 0.0183381911324 |
Amino acid sequence | MFRLETGSPRDPGLQGLPKEVAHGSRPLEQDLRPGQRGREFADIYLTSLNC |
Secondary structure | LEEELLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLHHHEEEEELLL |
PRMN | - |
PiMo | - |