Difference between revisions of "NONHSAT002652"

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sequence = <dnaseq>CAACTCGACTTGGAAGCAATCCAACAGAGCAGCTGTTGTGGCTAGTGGAGGTTCCCAAATACCTGTCATGAGTGGTCTGAAGCTTCTGGAAGTAGTGAAGTAGGGAAGCTGCAGACTGCCAAGAATCAGAGAAAGTCTGAGCTGTCATTTACTTTGAATGAGGAACTTAAAAACATTCACAATATTGGTGGACAACCCACCCATCAGCACACCTAGGGTGCCTCAGTTTCTTGTGCAAGGGCTCAGAGGGCAGATGCTCACAGTGTTGACTAAGCGTGCACCGAGTAAGCTCTCACTGGAAGGAACAGTGGTACAGTGAGAGGAATGCCAACCAGCTGCAAATTAAAACTACATGAGACTGAAGAGAATGCAAACACAGGAATCTGCCAAACCTGCCAAAACCCTGCAGAAACCGGACAAGGTTGTCACAGCTGGTTATAAACCTGTTGCTAATCATCAGTGTAATATTGCATATGAGAAGAAAAAGAAAGAAGAGGGAAAGAGGGTGCAGGCTGATAAAGACCACGTTTTATCCTTGCTATTTGCTGCCTTCGAGAAACACCAGTGTTACAACATAAAGGATGTGGTTGGCATCACAATGCAACCTGTGTGTGCCTCAAGGAAATCTTGAATGAGACGGGTGTTTGAAATGTCAGTGGTCCCCACAAAAGCACATGGAGCTGAAGGCAGAGACTGACATTATCCGGCAGCAGCCAAgagt</dnaseq>|
 
sequence = <dnaseq>CAACTCGACTTGGAAGCAATCCAACAGAGCAGCTGTTGTGGCTAGTGGAGGTTCCCAAATACCTGTCATGAGTGGTCTGAAGCTTCTGGAAGTAGTGAAGTAGGGAAGCTGCAGACTGCCAAGAATCAGAGAAAGTCTGAGCTGTCATTTACTTTGAATGAGGAACTTAAAAACATTCACAATATTGGTGGACAACCCACCCATCAGCACACCTAGGGTGCCTCAGTTTCTTGTGCAAGGGCTCAGAGGGCAGATGCTCACAGTGTTGACTAAGCGTGCACCGAGTAAGCTCTCACTGGAAGGAACAGTGGTACAGTGAGAGGAATGCCAACCAGCTGCAAATTAAAACTACATGAGACTGAAGAGAATGCAAACACAGGAATCTGCCAAACCTGCCAAAACCCTGCAGAAACCGGACAAGGTTGTCACAGCTGGTTATAAACCTGTTGCTAATCATCAGTGTAATATTGCATATGAGAAGAAAAAGAAAGAAGAGGGAAAGAGGGTGCAGGCTGATAAAGACCACGTTTTATCCTTGCTATTTGCTGCCTTCGAGAAACACCAGTGTTACAACATAAAGGATGTGGTTGGCATCACAATGCAACCTGTGTGTGCCTCAAGGAAATCTTGAATGAGACGGGTGTTTGAAATGTCAGTGGTCCCCACAAAAGCACATGGAGCTGAAGGCAGAGACTGACATTATCCGGCAGCAGCCAAgagt</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG001164]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG001164]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 19:23, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT002652

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

721 nt

Genomic location

chr1-:41059305..41060025

Exon number

1

Exons

41059305..41060025

Genome context

Sequence
000001 CAACTCGACT TGGAAGCAAT CCAACAGAGC AGCTGTTGTG GCTAGTGGAG GTTCCCAAAT ACCTGTCATG AGTGGTCTGA 000080
000081 AGCTTCTGGA AGTAGTGAAG TAGGGAAGCT GCAGACTGCC AAGAATCAGA GAAAGTCTGA GCTGTCATTT ACTTTGAATG 000160
000161 AGGAACTTAA AAACATTCAC AATATTGGTG GACAACCCAC CCATCAGCAC ACCTAGGGTG CCTCAGTTTC TTGTGCAAGG 000240
000241 GCTCAGAGGG CAGATGCTCA CAGTGTTGAC TAAGCGTGCA CCGAGTAAGC TCTCACTGGA AGGAACAGTG GTACAGTGAG 000320
000321 AGGAATGCCA ACCAGCTGCA AATTAAAACT ACATGAGACT GAAGAGAATG CAAACACAGG AATCTGCCAA ACCTGCCAAA 000400
000401 ACCCTGCAGA AACCGGACAA GGTTGTCACA GCTGGTTATA AACCTGTTGC TAATCATCAG TGTAATATTG CATATGAGAA 000480
000481 GAAAAAGAAA GAAGAGGGAA AGAGGGTGCA GGCTGATAAA GACCACGTTT TATCCTTGCT ATTTGCTGCC TTCGAGAAAC 000560
000561 ACCAGTGTTA CAACATAAAG GATGTGGTTG GCATCACAAT GCAACCTGTG TGTGCCTCAA GGAAATCTTG AATGAGACGG 000640
000641 GTGTTTGAAA TGTCAGTGGT CCCCACAAAA GCACATGGAG CTGAAGGCAG AGACTGACAT TATCCGGCAG CAGCCAAgag 000720
000721 t
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Predicted Small Protein

Name NONHSAT002652_smProtein_473:577
Length 35
Molecular weight 4160.9402
Aromaticity 0.0882352941176
Instability index 68.7767647059
Isoelectric point 11.3450317383
Runs 7
Runs residual 0.0197319434103
Runs probability 0.0321119438767
Amino acid sequence MRRKRKKRERGCRLIKTTFYPCYLLPSRNTSVTT
Secondary structure LLLHHHHHLLLLEEEELLEEELLLLLLLLLLLLL
PRMN -
PiMo -